[med-svn] [Git][med-team/spoa][upstream] New upstream version 4.1.5

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / spoa


Commits:
2c26298f by Étienne Mollier at 2025-10-08T22:02:07+02:00
New upstream version 4.1.5
- - - - -


5 changed files:

- .github/workflows/spoa.yml
- .gitignore
- CMakeLists.txt
- meson.build
- src/simd_alignment_engine_implementation.hpp


Changes:

=====================================
.github/workflows/spoa.yml
=====================================
@@ -14,12 +14,10 @@ jobs:
     strategy:
       matrix:
         compiler:
-          - g++-7
           - g++
-          - clang++-6.0
           - clang++
 
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
 
     steps:
       - uses: actions/checkout at v3


=====================================
.gitignore
=====================================
@@ -1,5 +1,5 @@
-# Compiled Object files
-build/
-
+.cache/
+.vscode/
+build*
 /subprojects/*
 !/subprojects/*.wrap


=====================================
CMakeLists.txt
=====================================
@@ -1,6 +1,6 @@
 cmake_minimum_required(VERSION 3.12)
 
-project(spoa VERSION 4.1.4
+project(spoa VERSION 4.1.5
              LANGUAGES CXX
              DESCRIPTION "Spoa is a c++ library (and tool) for SIMD vectorized partial order alignment.")
 


=====================================
meson.build
=====================================
@@ -1,7 +1,7 @@
 project(
   'spoa',
   ['cpp'],
-  version : '4.1.4',
+  version : '4.1.5',
   default_options : [
     'buildtype=release',
     'warning_level=3',


=====================================
src/simd_alignment_engine_implementation.hpp
=====================================
@@ -1961,10 +1961,10 @@ Alignment SimdAlignmentEngine<A>::Convex(
         j_div = j / T::kNumVar;
         j_mod = j % T::kNumVar;
         if ((j == -1) ||
-            (j_mod != T::kNumVar - 1 &&      E[j_mod] + e_ != E[j_mod + 1]) ||
-            (j_mod == T::kNumVar - 1 && E_left[j_mod] + e_ != E[0])         ||
-            (j_mod != T::kNumVar - 1 &&      Q[j_mod] + c_ != Q[j_mod + 1]) ||
-            (j_mod == T::kNumVar - 1 && Q_left[j_mod] + c_ != Q[0])) {
+            (((j_mod != T::kNumVar - 1 &&      E[j_mod] + e_ != E[j_mod + 1]) ||
+              (j_mod == T::kNumVar - 1 && E_left[j_mod] + e_ != E[0]))        &&
+             ((j_mod != T::kNumVar - 1 &&      Q[j_mod] + c_ != Q[j_mod + 1]) ||
+              (j_mod == T::kNumVar - 1 && Q_left[j_mod] + c_ != Q[0])))) {
           break;
         }
       }



View it on GitLab: https://salsa.debian.org/med-team/spoa/-/commit/2c26298fa8c2ef0cbba9749aecddb14acc869363

-- 
View it on GitLab: https://salsa.debian.org/med-team/spoa/-/commit/2c26298fa8c2ef0cbba9749aecddb14acc869363
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20251008/db7ce785/attachment-0001.htm>