[med-svn] [Git][med-team/racon][master] 5 commits: Fix FTBFS with GCC 15. (Closes: #1097767)

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / racon


Commits:
6b7e4a1b by Andreas Tille at 2025-10-09T21:49:20+02:00
Fix FTBFS with GCC 15. (Closes: #1097767)

- - - - -
c6a8f9e1 by Andreas Tille at 2025-10-09T21:50:49+02:00
d/watch: version = 5

- - - - -
03ad15a6 by Andreas Tille at 2025-10-09T21:51:02+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
b8aa970e by Andreas Tille at 2025-10-09T21:51:25+02:00
debputy lint --auto-fix (routine-update)

- - - - -
e7e67c82 by Andreas Tille at 2025-10-09T21:55:42+02:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/gcc-15.patch
- debian/patches/series
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+racon (1.5.0-4) unstable; urgency=medium
+
+  [ Adrian Bunk ]
+  * Fix FTBFS with GCC 15. (Closes: #1097767)
+
+  [ Andreas Tille ]
+  * d/watch: version = 5
+  * Standards-Version: 4.7.2 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 09 Oct 2025 21:53:44 +0200
+
 racon (1.5.0-3) unstable; urgency=medium
 
   * Standards-Version: 4.6.1 (routine-update)


=====================================
debian/control
=====================================
@@ -1,19 +1,21 @@
 Source: racon
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Cédric Lood <cedric.lood at kuleuven.be>,
-           Andreas Tille <tille at debian.org>
+Uploaders:
+ Cédric Lood <cedric.lood at kuleuven.be>,
+ Andreas Tille <tille at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               cmake,
-               libgtest-dev,
-               libbioparser-dev,
-               libcereal-dev,
-               libedlib-dev (>= 1.2.7-3~),
-               libspoa-dev,
-               libthread-pool-dev (>= 3.0.2),
-               rampler
-Standards-Version: 4.6.1
+Build-Depends:
+ debhelper-compat (= 13),
+ cmake,
+ libgtest-dev,
+ libbioparser-dev,
+ libcereal-dev,
+ libedlib-dev,
+ libspoa-dev,
+ libthread-pool-dev,
+ rampler,
 Vcs-Browser: https://salsa.debian.org/med-team/racon
 Vcs-Git: https://salsa.debian.org/med-team/racon.git
 Homepage: https://github.com/lbcb-sci/racon
@@ -21,9 +23,12 @@ Rules-Requires-Root: no
 
 Package: racon
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
-Recommends: python3, rampler
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Recommends:
+ python3,
+ rampler,
 Description: consensus module for raw de novo DNA assembly of long uncorrected reads
  Racon is intended as a standalone consensus module to correct raw
  contigs generated by rapid assembly methods which do not include a


=====================================
debian/patches/gcc-15.patch
=====================================
@@ -0,0 +1,14 @@
+Description: Fix FTBFS with GCC 15
+Author: Adrian Bunk <bunk at debian.org>
+Bug-Debian: https://bugs.debian.org/1097767
+
+--- racon-1.5.0.orig/src/window.hpp
++++ racon-1.5.0/src/window.hpp
+@@ -11,6 +11,7 @@
+ #include <memory>
+ #include <string>
+ #include <utility>
++#include <cstdint>
+ 
+ namespace spoa {
+     class AlignmentEngine;


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ use_debian_packaged_libs.patch
 remove_buildpath
 py3
 # make-compatible-with-old-threadpool.patch
+gcc-15.patch


=====================================
debian/watch
=====================================
@@ -1,3 +1,5 @@
-version=4
+Version: 5
 
-https://github.com/lbcb-sci/racon/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Template: Github
+Owner: lbcb-sci
+Project: @PACKAGE@



View it on GitLab: https://salsa.debian.org/med-team/racon/-/compare/14304f1936cdc32a351a0b8211196038874209c5...e7e67c8200765020770e694cc16da7556fb0a292

-- 
View it on GitLab: https://salsa.debian.org/med-team/racon/-/compare/14304f1936cdc32a351a0b8211196038874209c5...e7e67c8200765020770e694cc16da7556fb0a292
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