[med-svn] [Git][med-team/berkeley-express][master] 5 commits: d/watch: version=5

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / berkeley-express


Commits:
7d293003 by Andreas Tille at 2025-10-16T10:23:22+02:00
d/watch: version=5

- - - - -
b567a91f by Andreas Tille at 2025-10-16T10:26:47+02:00
Fix build with CMake 4 Closes: #1112724

- - - - -
cfdef703 by Andreas Tille at 2025-10-16T10:26:58+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
ad9e297c by Andreas Tille at 2025-10-16T10:31:32+02:00
debputy lint --auto-fix (routine-update)

- - - - -
de97848b by Andreas Tille at 2025-10-16T10:33:23+02:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+berkeley-express (1.5.3+dfsg-4) unstable; urgency=medium
+
+  * Team upload.
+  * d/watch: version=5
+  * Fix build with CMake 4
+    Closes: #1112724
+  * Standards-Version: 4.7.2 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 16 Oct 2025 10:31:34 +0200
+
 berkeley-express (1.5.3+dfsg-3) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -1,21 +1,23 @@
 Source: berkeley-express
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Michael R. Crusoe <crusoe at debian.org>
+Uploaders:
+ Michael R. Crusoe <crusoe at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               libboost-thread-dev,
-               libboost-system-dev,
-               libboost-filesystem-dev,
-               libboost-program-options-dev,
-               libboost-date-time-dev,
-               libbamtools-dev,
-               libboost-tools-dev,
-               libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el],
-               cmake,
-               libprotobuf-dev,
-               protobuf-compiler
-Standards-Version: 4.6.1
+Build-Depends:
+ debhelper-compat (= 13),
+ libboost-thread-dev,
+ libboost-system-dev,
+ libboost-filesystem-dev,
+ libboost-program-options-dev,
+ libboost-date-time-dev,
+ libbamtools-dev,
+ libboost-tools-dev,
+ libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el],
+ cmake,
+ libprotobuf-dev,
+ protobuf-compiler,
 Vcs-Browser: https://salsa.debian.org/med-team/berkeley-express
 Vcs-Git: https://salsa.debian.org/med-team/berkeley-express.git
 Homepage: http://bio.math.berkeley.edu/eXpress/index.html
@@ -23,9 +25,11 @@ Rules-Requires-Root: no
 
 Package: berkeley-express
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
-Recommends: med-config
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Recommends:
+ med-config,
 Description: Streaming quantification for high-throughput sequencing
  eXpress is a streaming tool for quantifying the abundances of a set of
  target sequences from sampled subsequences. Example applications include
@@ -71,7 +75,8 @@ Package: berkeley-express-doc
 Architecture: all
 Multi-Arch: foreign
 Section: doc
-Depends: ${misc:Depends}
+Depends:
+ ${misc:Depends},
 Description: Documentation for RNA-Seq tool eXpress
  This package provides a PDF with the documentation for eXpress.
  .


=====================================
debian/rules
=====================================
@@ -9,6 +9,8 @@ DH_VERBOSE := 1
 %:
 	dh $@
 
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
 
 override_dh_compress:
 	dh_compress --exclude=express-doc.pdf


=====================================
debian/watch
=====================================
@@ -1,4 +1,7 @@
-version=4
+Version: 5
 
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/adarob/eXpress/tags .*/@ANY_VERSION@@ARCHIVE_EXT@
+Template: Github
+Owner: adarob
+Project: eXpress
+Repack-Suffix: +dfsg
+Dversion-Mangle: auto



View it on GitLab: https://salsa.debian.org/med-team/berkeley-express/-/compare/d7c2df5df8e40beb6f5bdcc53edc97e1a36c6a17...de97848bf31661e9455312a35c252d97aa54c1a8

-- 
View it on GitLab: https://salsa.debian.org/med-team/berkeley-express/-/compare/d7c2df5df8e40beb6f5bdcc53edc97e1a36c6a17...de97848bf31661e9455312a35c252d97aa54c1a8
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