[med-svn] [Git][med-team/discosnp][master] 5 commits: Fix build with CMake 4 Closes: #1112847

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / discosnp


Commits:
0452fa4d by Andreas Tille at 2025-10-17T11:51:55+02:00
Fix build with CMake 4 Closes: #1112847

- - - - -
7d5c502f by Andreas Tille at 2025-10-17T11:53:57+02:00
d/watch: version=5

- - - - -
95f8e7ef by Andreas Tille at 2025-10-17T11:54:10+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
bfcb6544 by Andreas Tille at 2025-10-17T11:54:29+02:00
debputy lint --auto-fix (routine-update)

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09b43f0b by Andreas Tille at 2025-10-17T11:56:23+02:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+discosnp (1:2.6.2-5) unstable; urgency=medium
+
+  * Fix build with CMake 4
+    Closes: #1112847
+  * d/watch: version=5
+  * Standards-Version: 4.7.2 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Oct 2025 11:54:32 +0200
+
 discosnp (1:2.6.2-4) unstable; urgency=medium
 
   * Fix Python3.12 syntax


=====================================
debian/control
=====================================
@@ -1,18 +1,20 @@
 Source: discosnp
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>,
-           Andreas Tille <tille at debian.org>
+Uploaders:
+ Olivier Sallou <osallou at debian.org>,
+ Andreas Tille <tille at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               dh-sequence-python3,
-               python3,
-               cmake,
-               libgatbcore-dev,
-               libboost-dev,
-               libhdf5-dev,
-               zlib1g-dev
-Standards-Version: 4.7.0
+Build-Depends:
+ debhelper-compat (= 13),
+ dh-sequence-python3,
+ python3,
+ cmake,
+ libgatbcore-dev,
+ libboost-dev,
+ libhdf5-dev,
+ zlib1g-dev,
 Vcs-Browser: https://salsa.debian.org/med-team/discosnp
 Vcs-Git: https://salsa.debian.org/med-team/discosnp.git
 Homepage: http://colibread.inria.fr/discosnp/
@@ -20,11 +22,12 @@ Rules-Requires-Root: no
 
 Package: discosnp
 Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha
-Depends: ${misc:Depends},
-         ${shlibs:Depends},
-         ${python3:Depends},
-         python3,
-         gatb-core
+Depends:
+ ${misc:Depends},
+ ${shlibs:Depends},
+ ${python3:Depends},
+ python3,
+ gatb-core,
 Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads
  Software discoSnp is designed for discovering Single Nucleotide
  Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation


=====================================
debian/rules
=====================================
@@ -9,6 +9,9 @@ include /usr/share/dpkg/default.mk
 %:
 	dh $@
 
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
+
 override_dh_install:
 	dh_install
 	mkdir -p debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE)/bin


=====================================
debian/watch
=====================================
@@ -1,4 +1,6 @@
-version=4
+Version: 5
 
-opts="uversionmangle=s/^4\.4\.4/2.4.4/,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/GATB/DiscoSnp/tags (?:.*?/)?v?@ANY_VERSION@@ARCHIVE_EXT@
+Template: Github
+Owner: GATB
+Project: DiscoSnp
+Uversion-Mangle: s/^4\.4\.4/2.4.4/



View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/869c2e20a1fbd1477e471c4c05305d6290f24ddc...09b43f0ba8e86f9358fa4c5c2a111cb6679c46b0

-- 
View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/869c2e20a1fbd1477e471c4c05305d6290f24ddc...09b43f0ba8e86f9358fa4c5c2a111cb6679c46b0
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