[med-svn] [Git][med-team/flexbar][master] 6 commits: Import changelog entry for upload to experimental

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / flexbar


Commits:
10ea7833 by Andreas Tille at 2025-10-17T13:49:10+02:00
Import changelog entry for upload to experimental

- - - - -
5dcc2346 by Andreas Tille at 2025-10-17T13:50:36+02:00
Fix build with CMake 4

- - - - -
b2b94a00 by Andreas Tille at 2025-10-17T13:51:13+02:00
d/watch: version=5

- - - - -
99cb02c3 by Andreas Tille at 2025-10-17T13:51:19+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
5071f7e0 by Andreas Tille at 2025-10-17T13:51:39+02:00
debputy lint --auto-fix (routine-update)

- - - - -
02f76126 by Andreas Tille at 2025-10-17T13:53:37+02:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,23 @@
+flexbar (1:3.5.0-7) unstable; urgency=medium
+
+  * Fix build with CMake 4
+    Closes: #1112919
+  * d/watch: version=5
+  * Standards-Version: 4.7.2 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Oct 2025 13:51:58 +0200
+
+flexbar (1:3.5.0-6) experimental; urgency=medium
+
+  * Team upload.
+  * d/control: Experimental rebuild using the 3rd release candidate of
+    SeqAn 2.5.0
+  * Added patch for the explicit seqan2 namespace.
+  * salsa ci: allow reprotest to fail
+
+ -- Enrico Seiler <enrico.seiler.debian at outlook.com>  Tue, 26 Nov 2024 16:04:46 +0100
+
 flexbar (1:3.5.0-5) unstable; urgency=medium
 
   [ Andreas Tille ]


=====================================
debian/control
=====================================
@@ -1,16 +1,18 @@
 Source: flexbar
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
-           Tony Travis <ajt at minke.ukfsn.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Tony Travis <ajt at minke.ukfsn.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               libtbb-dev,
-               cmake,
-               libseqan2-dev,
-               zlib1g-dev,
-               libbz2-dev
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 13),
+ libtbb-dev,
+ cmake,
+ libseqan2-dev,
+ zlib1g-dev,
+ libbz2-dev,
 Vcs-Browser: https://salsa.debian.org/med-team/flexbar
 Vcs-Git: https://salsa.debian.org/med-team/flexbar.git
 Homepage: https://github.com/seqan/flexbar
@@ -18,8 +20,9 @@ Rules-Requires-Root: no
 
 Package: flexbar
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
 Description: flexible barcode and adapter removal for sequencing platforms
  Flexbar preprocesses high-throughput sequencing data efficiently. It
  demultiplexes barcoded runs and removes adapter sequences. Moreover,


=====================================
debian/rules
=====================================
@@ -7,6 +7,9 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 %:
 	dh $@
 
+override_dh_auto_configure-arch:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
+
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	cd test ; \


=====================================
debian/watch
=====================================
@@ -1,3 +1,5 @@
-version=4
+Version: 5
 
-https://github.com/seqan/flexbar/tags .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+Template: Github
+Owner: seqan
+Project: flexbar



View it on GitLab: https://salsa.debian.org/med-team/flexbar/-/compare/7ae4261f2b48ea40e753eea43e71797bf3f4bd34...02f76126ff643b75b1ef55346707d5db663001b3

-- 
View it on GitLab: https://salsa.debian.org/med-team/flexbar/-/compare/7ae4261f2b48ea40e753eea43e71797bf3f4bd34...02f76126ff643b75b1ef55346707d5db663001b3
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20251017/a725462c/attachment-0001.htm>