[med-svn] [Git][med-team/hhsuite][master] 5 commits: Fix build with CMake 4 Closes: #1112991
Andreas Tille (@tille)
gitlab at salsa.debian.org
Fri Oct 17 16:45:59 BST 2025
Andreas Tille pushed to branch master at Debian Med / hhsuite
Commits:
8ced5012 by Andreas Tille at 2025-10-17T17:24:14+02:00
Fix build with CMake 4 Closes: #1112991
- - - - -
9c76e117 by Andreas Tille at 2025-10-17T17:29:08+02:00
d/watch: version=5
- - - - -
d49603d3 by Andreas Tille at 2025-10-17T17:29:30+02:00
Standards-Version: 4.7.2 (routine-update)
- - - - -
5209116d by Andreas Tille at 2025-10-17T17:36:27+02:00
debputy lint --auto-fix (routine-update)
- - - - -
05ac2182 by Andreas Tille at 2025-10-17T17:45:16+02:00
routine-update: Ready to upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/rules
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+hhsuite (3.3.0+ds-9) unstable; urgency=medium
+
+ * Fix build with CMake 4
+ Closes: #1112991
+ * d/watch: version=5
+ * Standards-Version: 4.7.2 (routine-update)
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Fri, 17 Oct 2025 17:36:29 +0200
+
hhsuite (3.3.0+ds-8) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,16 +1,18 @@
Source: hhsuite
+Standards-Version: 4.7.2
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Laszlo Kajan <lkajan at debian.org>,
- Andreas Tille <tille at debian.org>,
- Sascha Steinbiss <satta at debian.org>
+Uploaders:
+ Laszlo Kajan <lkajan at debian.org>,
+ Andreas Tille <tille at debian.org>,
+ Sascha Steinbiss <satta at debian.org>,
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 13),
- libsimde-dev,
- cmake,
- imagemagick,
- help2man
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 13),
+ libsimde-dev,
+ cmake,
+ imagemagick,
+ help2man,
Vcs-Browser: https://salsa.debian.org/med-team/hhsuite
Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git
Homepage: https://toolkit.tuebingen.mpg.de/
@@ -18,13 +20,16 @@ Rules-Requires-Root: no
Package: hhsuite
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${perl:Depends},
- hhsuite-data (= ${source:Version}),
- python3
-Conflicts: ffindex
-Built-Using: ${simde:Built-Using}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ ${perl:Depends},
+ hhsuite-data (= ${source:Version}),
+ python3,
+Conflicts:
+ ffindex,
+Built-Using:
+ ${simde:Built-Using},
Description: sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
@@ -47,7 +52,8 @@ Description: sensitive protein sequence searching based on HMM-HMM alignment
Package: hhsuite-data
Architecture: all
Multi-Arch: foreign
-Depends: ${misc:Depends}
+Depends:
+ ${misc:Depends},
Description: sensitive protein sequence searching based on HMM-HMM alignment (data)
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
=====================================
debian/rules
=====================================
@@ -45,22 +45,22 @@ override_dh_auto_configure-arch:
ifneq (,$(filter $(DEB_HOST_ARCH),amd64 i386))
for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \
export CXXFLAGS="$(CXXFLAGS) -m$${SIMD}" && \
- dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DNATIVE_ARCH=0; \
+ dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; \
done
export CXXFLAGS="$(CXXFLAGS)" && \
- dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0
+ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5
ifeq (i386,$(DEB_HOST_ARCH))
for SIMD in sse2 sse ; do \
export CXXFLAGS="$(CXXFLAGS) -m$${SIMD}" && \
- dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DNATIVE_ARCH=0 ; \
+ dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; \
done
endif
else
- dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0
+ dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5
endif
override_dh_auto_configure-indep:
- dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0
+ dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5
override_dh_auto_build-arch:
ifneq (,$(filter $(DEB_HOST_ARCH),amd64 i386))
=====================================
debian/watch
=====================================
@@ -1,3 +1,8 @@
-version=4
-opts="uversionmangle=s/-beta\.(\d)/~beta$1/;s/-beta/~beta/,repacksuffix=+ds,dversionmangle=auto,repack,compression=xz" \
-https://github.com/soedinglab/hh-suite/tags .*/v(\d[-\d.beta]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+Version: 5
+
+Template: Github
+Owner: soedinglab
+Project: hh-suite
+Uversion-Mangle: s/-beta\.(\d)/~beta$1/;s/-beta/~beta/
+Repack-Suffix: +ds
+Dversion-Mangle: auto
View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/compare/257680e8eefe394feb28efc049f313108decada7...05ac218289557edefd23b15570cffd56d21c9bbd
--
View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/compare/257680e8eefe394feb28efc049f313108decada7...05ac218289557edefd23b15570cffd56d21c9bbd
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