[med-svn] [Git][med-team/hinge][master] 6 commits: Fix build with CMake 4 Closes: #1112992

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / hinge


Commits:
5f2b4dfa by Andreas Tille at 2025-10-17T18:36:45+02:00
Fix build with CMake 4 Closes: #1112992

- - - - -
156b4ac3 by Andreas Tille at 2025-10-17T18:37:11+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
93e98631 by Andreas Tille at 2025-10-17T18:38:06+02:00
d/watch: version=5

- - - - -
2860e4f0 by Andreas Tille at 2025-10-17T18:43:56+02:00
debputy lint --auto-fix (routine-update)

- - - - -
646ee3f5 by Andreas Tille at 2025-10-17T19:03:07+02:00
Deactivate not yet finished test

- - - - -
3e5edcc9 by Andreas Tille at 2025-10-17T19:04:53+02:00
Upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/rules
- + debian/source/lintian-overrides
- debian/tests/control
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-hinge (0.5.0-8) UNRELEASED; urgency=medium
+hinge (0.5.0-8) unstable; urgency=medium
 
   [ Komolehin Israel Timilehin ]
   * Document dependency installation errors
@@ -9,9 +9,13 @@ hinge (0.5.0-8) UNRELEASED; urgency=medium
   * Added README to document error
 
   [ Andreas Tille ]
-  * Standards-Version: 4.7.0 (routine-update)
+  * Standards-Version: 4.7.2 (routine-update)
+  * Fix build with CMake 4
+    Closes: #1112992
+  * d/watch: version=5
+  * debputy lint --auto-fix (routine-update)
 
- -- Komolehin Israel Timilehin <komolehinisrael at gmail.com>  Wed, 10 Jan 2024 11:04:19 +0100
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Oct 2025 19:03:17 +0200
 
 hinge (0.5.0-7) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -1,29 +1,31 @@
 Source: hinge
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               cmake,
-               libspdlog-dev,
-               libboost-dev,
-               libboost-graph-dev,
-               libhdf5-dev,
-               zlib1g-dev,
-               pandoc,
+Build-Depends:
+ debhelper-compat (= 13),
+ cmake,
+ libspdlog-dev,
+ libboost-dev,
+ libboost-graph-dev,
+ libhdf5-dev,
+ zlib1g-dev,
+ pandoc,
 # Run-Time-Depends:
 # (to prevent building where not installable)
-               python3,
-               daligner,
-               dazzdb,
-               dascrubber,
-               python3-numpy,
-               python3-ujson,
-               python3-colormap,
-               python3-pbcore,
-               python3-networkx,
-               python3-matplotlib
-Standards-Version: 4.7.0
+ python3,
+ daligner,
+ dazzdb,
+ dascrubber,
+ python3-numpy,
+ python3-ujson,
+ python3-colormap,
+ python3-pbcore,
+ python3-networkx,
+ python3-matplotlib,
 Vcs-Browser: https://salsa.debian.org/med-team/hinge
 Vcs-Git: https://salsa.debian.org/med-team/hinge.git
 Homepage: https://github.com/HingeAssembler/HINGE
@@ -31,18 +33,19 @@ Rules-Requires-Root: no
 
 Package: hinge
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
-         python3,
-         daligner,
-         dazzdb,
-         dascrubber,
-         python3-numpy,
-         python3-ujson,
-         python3-colormap,
-         python3-pbcore,
-         python3-networkx,
-         python3-matplotlib
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ python3,
+ daligner,
+ dazzdb,
+ dascrubber,
+ python3-numpy,
+ python3-ujson,
+ python3-colormap,
+ python3-pbcore,
+ python3-networkx,
+ python3-matplotlib,
 Description: long read genome assembler based on hinging
  HINGE is a genome assembler that seeks to achieve optimal repeat resolution
  by distinguishing repeats that can be resolved given the data from those that


=====================================
debian/rules
=====================================
@@ -7,6 +7,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 %:
 	dh $@
 
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
+
 override_dh_installexamples:
 	dh_installexamples
 	# only install nominal.ini from the utils/ directory, but preserve


=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1,3 @@
+# FIXME: For the moment the autopkgtest is deactivated
+hinge source: empty-debian-tests-control [debian/tests/control]
+


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,4 @@
-Tests: run-demo
-Depends: wget, hinge, seqtk
-Restrictions: allow-stderr, needs-internet
\ No newline at end of file
+# FIXME: The test is deactivated since not yet finished
+#Tests: run-demo
+#Depends: wget, hinge, seqtk
+#Restrictions: allow-stderr, needs-internet


=====================================
debian/watch
=====================================
@@ -1,5 +1,5 @@
-version=4
+Version: 5
 
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%hinge-$1.tar.gz%" \
-   https://github.com/HingeAssembler/HINGE/tags \
-   (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Template: Github
+Owner: HingeAssembler
+Project: HINGE



View it on GitLab: https://salsa.debian.org/med-team/hinge/-/compare/a95666d9b417b7326b120223da80d7fc73ef552a...3e5edcc9365bb7558368436c4a5c0e1916aa0bfc

-- 
View it on GitLab: https://salsa.debian.org/med-team/hinge/-/compare/a95666d9b417b7326b120223da80d7fc73ef552a...3e5edcc9365bb7558368436c4a5c0e1916aa0bfc
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