[med-svn] [Git][med-team/metabat][master] 11 commits: Fix build with CMake 4 Closes: #1113279

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / metabat


Commits:
c98e2946 by Andreas Tille at 2025-10-19T10:51:41+02:00
Fix build with CMake 4 Closes: #1113279

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5634afc6 by Andreas Tille at 2025-10-19T10:52:00+02:00
Standards-Version: 4.7.2 (routine-update)

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8edbd6ab by Andreas Tille at 2025-10-19T16:39:21+02:00
d/watch: version=5

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dd808b26 by Andreas Tille at 2025-10-19T16:39:57+02:00
New upstream version 2.18
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f91e537c by Andreas Tille at 2025-10-19T16:39:57+02:00
New upstream version

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a0039357 by Andreas Tille at 2025-10-19T16:39:57+02:00
Update upstream source from tag 'upstream/2.18'

Update to upstream version '2.18'
with Debian dir 0be7edf0b493d23b7b3d8d43a4182be8c4f83757
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28f9878d by Andreas Tille at 2025-10-19T16:41:05+02:00
Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update)

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4d886b61 by Andreas Tille at 2025-10-19T15:41:05+01:00
Remove duplicate line from changelog.

Changes-By: lintian-brush

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9cf268b8 by Andreas Tille at 2025-10-19T17:01:32+02:00
No need to patch CMakeLists.txt any more which since configuration by variables enables using local libs

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87c0f3c0 by Andreas Tille at 2025-10-19T17:02:19+02:00
d/copyright: review

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25355291 by Andreas Tille at 2025-10-19T17:03:16+02:00
Upload to unstable

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40 changed files:

- .gitlab-ci.yml
- CMakeLists.txt
- Dockerfile
- INSTALL.md
- README.md
- + VERSION
- + cmake/Modules/FindHTSlib.cmake
- + cmake/Modules/GetGitVersion.cmake
- + cmake/Modules/LibFindMacros.cmake
- − cmake/git-watcher.cmake
- cmake/htslib.cmake
- cmake/zlib.cmake
- debian/changelog
- debian/control
- debian/copyright
- − debian/patches/series
- − debian/patches/use_debian_packaged_libs.patch
- debian/rules
- debian/watch
- − metabat_version.h.in
- runMetaBat.sh
- src/BamUtils.h
- src/CMakeLists.txt
- src/CheckRead.hpp
- src/IOThreadBuffer.h
- src/KseqReader.h
- src/OpenMP.h
- src/ProgressTracker.h
- src/RunningStats.h
- src/SafeOfstream.hpp
- src/contigOverlaps.cpp
- src/jgi_summarize_bam_contig_depths.cpp
- src/jgi_summarize_bam_contig_depths.h
- src/metabat1.cpp
- src/metabat1.h
- src/metabat2.cpp
- src/metabat2.h
- src/ranker.h
- test/CMakeLists.txt
- + version.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/metabat/-/compare/5830de0659baff156405b31380546ead07004a17...25355291ce2f98b72f35db326fe6f3e9d96e365f

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View it on GitLab: https://salsa.debian.org/med-team/metabat/-/compare/5830de0659baff156405b31380546ead07004a17...25355291ce2f98b72f35db326fe6f3e9d96e365f
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