[med-svn] [Git][med-team/spades][master] 4 commits: Fix build with CMake 4 Closes: #1113531

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / spades


Commits:
99f28bbb by Andreas Tille at 2025-10-20T15:17:46+02:00
Fix build with CMake 4 Closes: #1113531

- - - - -
0c1d4310 by Andreas Tille at 2025-10-20T15:19:34+02:00
d/watch: version=5

- - - - -
0d0e3829 by Andreas Tille at 2025-10-20T15:20:19+02:00
debputy lint --auto-fix (routine-update)

- - - - -
a9d7e271 by Andreas Tille at 2025-10-20T15:33:03+02:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+spades (4.0.0+really3.15.5+dfsg-3) unstable; urgency=medium
+
+  * Fix build with CMake 4
+    Closes: #1113531
+  * d/watch: version=5
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Mon, 20 Oct 2025 15:20:24 +0200
+
 spades (4.0.0+really3.15.5+dfsg-2) unstable; urgency=medium
 
   [ Pierre Gruet ]


=====================================
debian/control
=====================================
@@ -1,37 +1,39 @@
 Source: spades
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
-           Sascha Steinbiss <satta at debian.org>,
-           Michael R. Crusoe <crusoe at debian.org>,
-           Alexandre Mestiashvili <mestia at debian.org>,
-           Étienne Mollier <emollier at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Sascha Steinbiss <satta at debian.org>,
+ Michael R. Crusoe <crusoe at debian.org>,
+ Alexandre Mestiashvili <mestia at debian.org>,
+ Étienne Mollier <emollier at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               dh-sequence-python3,
-               clang-format,
-               clang-tidy,
-               clang-tools,
-               cmake,
-               python3-all,
-               zlib1g-dev,
-               libbz2-dev,
-               libbam-dev,
-               libbamtools-dev,
-               libc++-dev,
-               libhts-dev,
-               libnlopt-dev,
-               libnlopt-cxx-dev,
-               libssw-dev,
-               libzstd-dev,
-               llvm-dev,
-               python3-yaml,
-               python3-joblib,
-               asciidoctor,
-               bwa,
-               libbwa-dev,
-               lynx
-Standards-Version: 4.7.2
+Build-Depends:
+ debhelper-compat (= 13),
+ dh-sequence-python3,
+ clang-format,
+ clang-tidy,
+ clang-tools,
+ cmake,
+ python3-all,
+ zlib1g-dev,
+ libbz2-dev,
+ libbam-dev,
+ libbamtools-dev,
+ libc++-dev,
+ libhts-dev,
+ libnlopt-dev,
+ libnlopt-cxx-dev,
+ libssw-dev,
+ libzstd-dev,
+ llvm-dev,
+ python3-yaml,
+ python3-joblib,
+ asciidoctor,
+ bwa,
+ libbwa-dev,
+ lynx,
 Vcs-Browser: https://salsa.debian.org/med-team/spades
 Vcs-Git: https://salsa.debian.org/med-team/spades.git
 Homepage: https://github.com/ablab/spades
@@ -39,16 +41,17 @@ Rules-Requires-Root: no
 
 Package: spades
 Architecture: amd64
-Depends: ${shlibs:Depends},
-         ${python3:Depends},
-         ${misc:Depends},
-         python3,
-         python3-joblib,
-         python3-packaging,
-         python3-yaml,
-         bwa,
-         bamtools,
-         samtools
+Depends:
+ ${shlibs:Depends},
+ ${python3:Depends},
+ ${misc:Depends},
+ python3,
+ python3-joblib,
+ python3-packaging,
+ python3-yaml,
+ bwa,
+ bamtools,
+ samtools,
 Description: genome assembler for single-cell and isolates data sets
  The SPAdes – St. Petersburg genome assembler is intended for both
  standard isolates and single-cell MDA bacteria assemblies.  It works


=====================================
debian/rules
=====================================
@@ -23,7 +23,7 @@ override_dh_auto_clean:
 	rm -rf $(mandir)
 
 override_dh_auto_configure:
-	dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE
+	dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE -DCMAKE_POLICY_VERSION_MINIMUM=3.5
 
 override_dh_auto_build:
 	dh_auto_build -- all debruijn_test include_test


=====================================
debian/watch
=====================================
@@ -1,4 +1,7 @@
-version=4
+Version: 5
 
-opts="repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/ablab/spades/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Template: Github
+Owner: ablab
+Project: spades
+Repack-Suffix: +dfsg
+Dversion-Mangle: auto



View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/b8a0ace7e64d22795f54f0eee0d63a61dded035f...a9d7e27141f6c5aa7f9389308800b8b8f99ebb46

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/b8a0ace7e64d22795f54f0eee0d63a61dded035f...a9d7e27141f6c5aa7f9389308800b8b8f99ebb46
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