[med-svn] [Git][med-team/simka][master] 6 commits: Fix build with CMake 4

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / simka


Commits:
9daf208f by Andreas Tille at 2025-10-20T15:22:49+02:00
Fix build with CMake 4
  Closes: #1113504

- - - - -
f9f7cb75 by Andreas Tille at 2025-10-20T15:23:46+02:00
d/watch: version=5

- - - - -
3233074d by Andreas Tille at 2025-10-20T15:24:04+02:00
Standards-Version: 4.7.2 (routine-update)

- - - - -
183b1fdf by Andreas Tille at 2025-10-20T15:24:35+02:00
debputy lint --auto-fix (routine-update)

- - - - -
625fc858 by Andreas Tille at 2025-10-20T15:41:06+02:00
debian/not-installed: Mention files that are blamed by dh_missing

- - - - -
fb8d3c2d by Andreas Tille at 2025-10-20T15:43:53+02:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/not-installed
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+simka (1.5.3-9) unstable; urgency=medium
+
+  * Team upload.
+  * Fix build with CMake 4
+    Closes: #1113504
+  * d/watch: version=5
+  * Standards-Version: 4.7.2 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+  * debian/not-installed: Mention files that are blamed by dh_missing
+
+ -- Andreas Tille <tille at debian.org>  Mon, 20 Oct 2025 15:41:14 +0200
+
 simka (1.5.3-8) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -1,18 +1,20 @@
 Source: simka
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Shayan Doust <hello at shayandoust.me>
+Uploaders:
+ Shayan Doust <hello at shayandoust.me>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               cmake,
-               libgatbcore-dev,
-               zlib1g-dev,
-               libhdf5-dev,
-               libboost-dev,
-               python3-all,
-               dh-sequence-python3,
-               chrpath
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 13),
+ cmake,
+ libgatbcore-dev,
+ zlib1g-dev,
+ libhdf5-dev,
+ libboost-dev,
+ python3-all,
+ dh-sequence-python3,
+ chrpath,
 Vcs-Browser: https://salsa.debian.org/med-team/simka
 Vcs-Git: https://salsa.debian.org/med-team/simka.git
 Homepage: https://github.com/GATB/simka
@@ -20,8 +22,9 @@ Rules-Requires-Root: no
 
 Package: simka
 Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
 Description: comparative metagenomics method dedicated to NGS datasets
  Simka is a de novo comparative metagenomics tool. Simka represents each
  dataset as a k-mer spectrum and compute several classical ecological
@@ -29,9 +32,10 @@ Description: comparative metagenomics method dedicated to NGS datasets
 
 Package: simkamin
 Architecture: all
-Depends: ${python3:Depends},
-         ${misc:Depends},
-         python3
+Depends:
+ ${python3:Depends},
+ ${misc:Depends},
+ python3,
 Description: approximate comparative metagenomics method dedicated to NGS datasets
  Simka is a de novo comparative metagenomics tool. Simka represents each
  dataset as a k-mer spectrum and compute several classical ecological


=====================================
debian/not-installed
=====================================
@@ -0,0 +1,3 @@
+usr/LICENSE
+usr/README.md
+usr/simkaMin/*


=====================================
debian/rules
=====================================
@@ -10,6 +10,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 %:
 	dh $@
 
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
+
 override_dh_install-arch:
 	dh_install -a
 	chrpath --delete debian/simka/usr/bin/*
@@ -32,5 +35,3 @@ override_dh_installman:
 	dh_installman
 	rm -rf debian/simka/usr/share/man/man1/simkaMin.1 \
 		debian/simka/usr/share/man/man1/simkaMin_update.1
-
-override_dh_missing:


=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
 
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/GATB/simka/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@
+Template: Github
+Owner: GATB
+Project: simka



View it on GitLab: https://salsa.debian.org/med-team/simka/-/compare/6f4eb5fe215a82ca2c7f1c22c896625f6931989c...fb8d3c2d84d09b7d9fa5100651716b74e2901aab

-- 
View it on GitLab: https://salsa.debian.org/med-team/simka/-/compare/6f4eb5fe215a82ca2c7f1c22c896625f6931989c...fb8d3c2d84d09b7d9fa5100651716b74e2901aab
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20251020/de610082/attachment-0001.htm>