[med-svn] [Git][med-team/sibelia][master] 7 commits: Fix build with CMake 4 Closes: #1113499

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / sibelia


Commits:
756eb56e by Andreas Tille at 2025-10-20T21:02:12+02:00
Fix build with CMake 4 Closes: #1113499

- - - - -
d029c98e by Andreas Tille at 2025-10-20T21:05:10+02:00
d/watch: version=5

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881a8772 by Andreas Tille at 2025-10-20T21:05:34+02:00
Standards-Version: 4.7.2 (routine-update)

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e62dd96f by Andreas Tille at 2025-10-20T21:05:34+02:00
debhelper-compat 13 (routine-update)

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2a3a3300 by Andreas Tille at 2025-10-20T21:10:22+02:00
debputy lint --auto-fix (routine-update)

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2bc14c63 by Andreas Tille at 2025-10-20T21:12:26+02:00
routine-update: Ready to upload to unstable

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97b1d4b9 by Andreas Tille at 2025-10-20T21:15:15+02:00
Inject changelog from upload to experimental

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4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,23 @@
+sibelia (3.0.7+dfsg-5) unstable; urgency=medium
+
+  * Fix build with CMake 4
+    Closes: #1113499
+  * d/watch: version=5
+  * Standards-Version: 4.7.2 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Mon, 20 Oct 2025 21:10:24 +0200
+
+sibelia (3.0.7+dfsg-4) experimental; urgency=medium
+
+  * Team upload.
+  * d/control: Experimental rebuild using the 3rd release candidate of
+    SeqAn 2.5.0
+  * Added patch for the explicit seqan2 namespace.
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Mon, 25 Nov 2024 15:20:04 +0100
+
 sibelia (3.0.7+dfsg-3) unstable; urgency=medium
 
   * Enable binary-all builds


=====================================
debian/control
=====================================
@@ -1,16 +1,18 @@
 Source: sibelia
+Standards-Version: 4.7.2
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
-               cmake,
-               libdivsufsort-dev,
-               libboost-dev,
-               libseqan2-dev,
-               libtclap-dev,
-               libhts-dev
-Standards-Version: 4.5.0
+Build-Depends:
+ debhelper-compat (= 13),
+ cmake,
+ libdivsufsort-dev,
+ libboost-dev,
+ libseqan2-dev,
+ libtclap-dev,
+ libhts-dev,
 Vcs-Browser: https://salsa.debian.org/med-team/sibelia
 Vcs-Git: https://salsa.debian.org/med-team/sibelia.git
 Homepage: http://bioinf.spbau.ru/sibelia
@@ -18,11 +20,13 @@ Rules-Requires-Root: no
 
 Package: sibelia
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
-         python3,
-         lagan
-Suggests: sibelia-examples
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ python3,
+ lagan,
+Suggests:
+ sibelia-examples,
 Description: comparative genomics tool
  Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
  It assists biologists in analysing the genomic variations that correlate
@@ -39,7 +43,8 @@ Description: comparative genomics tool
 
 Package: sibelia-examples
 Architecture: all
-Depends: ${misc:Depends}
+Depends:
+ ${misc:Depends},
 Description: comparative genomics tool (example data)
  Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
  It assists biologists in analysing the genomic variations that correlate


=====================================
debian/rules
=====================================
@@ -10,6 +10,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 %:
 	dh $@ --sourcedirectory=src
 
+override_dh_auto_configure:
+	dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5
+
 override_dh_install:
 	dh_install
 	find debian -name LICENSE.txt -delete


=====================================
debian/watch
=====================================
@@ -1,4 +1,6 @@
-version=4
+Version: 5
 
-opts="repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz" \
-  http://sf.net/sibelia-bio/Sibelia@ANY_VERSION@-Source@ARCHIVE_EXT@
+Source: https://sf.net/@PACKAGE@-bio/
+Matching-Pattern: Sibelia at ANY_VERSION@-Source at ARCHIVE_EXT@
+Repack-Suffix: +dfsg
+Dversion-Mangle: auto



View it on GitLab: https://salsa.debian.org/med-team/sibelia/-/compare/9f70ed7949ad095e619e483f22de3b1ac34dae84...97b1d4b946b892c7922214bc3fa73fcc2678874c

-- 
View it on GitLab: https://salsa.debian.org/med-team/sibelia/-/compare/9f70ed7949ad095e619e483f22de3b1ac34dae84...97b1d4b946b892c7922214bc3fa73fcc2678874c
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