[med-svn] [Git][med-team/pyensembl][master] Revision in preparation for varcode and pVACtools

[Steffen Möller (@moeller)]

Steffen Möller pushed to branch master at Debian Med / pyensembl


Commits:
06410fdd by Steffen Möller at 2025-10-26T17:38:11+00:00
Revision in preparation for varcode and pVACtools

- - - - -


3 changed files:

- debian/changelog
- debian/control
- + debian/patches/no_tinytimer_in_requirements.txt


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-pyensembl (2.3.13-3) UNRELEASED; urgency=medium
+pyensembl (2.3.13-3) unstable; urgency=medium
 
   * Need to remove tinytimer from resources.txt to avoid error message
     at runtime checking dependencies.


=====================================
debian/control
=====================================
@@ -15,7 +15,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-memoized-property,
                python3-gtfparse,
                python3-pytest <!nocheck>,
-#              python3-tinytimer # only run during tests that are not run because of
+#              python3-tinytimer <!nocheck> # only run during tests that are not run because of
 #              demand for internet access
 Standards-Version: 4.7.2
 Homepage: https://github.com/openvax/pyensembl
@@ -37,6 +37,6 @@ Description: installs data from the Ensembl genome database
  e.g. for the mapping of reads from RNA-seq against the
  latest golden path - or a previous one to compare analyses.
  .
- This package provides a reproducible way to insatll this
+ This package provides a reproducible way to install this
  data and thus simplify the automation of respective
  workflows.


=====================================
debian/patches/no_tinytimer_in_requirements.txt
=====================================
@@ -0,0 +1,12 @@
+Index: pyensembl/requirements.txt
+===================================================================
+--- pyensembl.orig/requirements.txt
++++ pyensembl/requirements.txt
+@@ -1,7 +1,6 @@
+ typechecks>=0.0.2,<1.0.0
+ datacache>=1.4.0,<2.0.0
+ memoized-property>=1.0.2
+-tinytimer>=0.0.0,<1.0.0
+ gtfparse>=2.5.0,<3.0.0
+ serializable>=0.2.1,<1.0.0
+ pylint>=2.17.2,<3.0.0



View it on GitLab: https://salsa.debian.org/med-team/pyensembl/-/commit/06410fdd9685dc261a0b4a7d02ee39ad64cfda71

-- 
View it on GitLab: https://salsa.debian.org/med-team/pyensembl/-/commit/06410fdd9685dc261a0b4a7d02ee39ad64cfda71
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