[med-svn] [Git][med-team/last-align][master] 10 commits: Prepare for new upstream release

[Charles Plessy (@plessy)]

Charles Plessy pushed to branch master at Debian Med / last-align


Commits:
203ddf7f by Charles Plessy at 2025-09-02T11:50:16+09:00
Prepare for new upstream release

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9291a16b by Charles Plessy at 2025-09-02T11:50:44+09:00
New upstream version 1642
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69046e11 by Charles Plessy at 2025-09-02T11:50:44+09:00
New upstream version

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9c298e36 by Charles Plessy at 2025-09-02T11:50:46+09:00
Update upstream source from tag 'upstream/1642'

Update to upstream version '1642'
with Debian dir 536e2fad7943bb22d589a759498b78c4b7297655
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9139a6a0 by Charles Plessy at 2025-09-02T11:50:46+09:00
Standards-Version: 4.7.2 (routine-update)

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3237919a by Charles Plessy at 2025-09-02T11:53:42+09:00
routine-update: Ready to upload to unstable

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2873b488 by Charles Plessy at 2025-09-02T12:03:31+09:00
Refresh patch.

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994c80ab by Charles Plessy at 2025-09-02T12:03:41+09:00
Correct debian/copyright.  Thanks, licenserecon

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ee8a9ed9 by Charles Plessy at 2025-09-02T13:13:11+09:00
Better clean the bin/ directory

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4a4adfbd by Charles Plessy at 2025-09-02T13:16:55+09:00
Refresh changelog

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31 changed files:

- bin/last-train
- bin/maf-linked
- data/MAM4.seed
- data/MAM8.seed
- data/YASS.seed
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/simde
- debian/rules
- doc/last-cookbook.rst
- doc/last-seeds.rst
- doc/lastdb.rst
- doc/maf-linked.rst
- src/Alignment.cc
- src/Alignment.hh
- src/AlignmentPot.hh
- src/AlignmentWrite.cc
- src/LastdbArguments.hh
- src/lastal.cc
- src/makefile
- src/split/cbrc_split_aligner.cc
- src/split/cbrc_split_aligner.hh
- src/split/cbrc_unsplit_alignment.cc
- src/split/cbrc_unsplit_alignment.hh
- src/split/mcf_last_splitter.cc
- src/split/mcf_last_splitter.hh
- test/last-test.sh
- + test/maf-linked-test.sh
- + test/maf-linked-test.txt
- + util/plot-score-matrix


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/9a9d806265a0aa921c3a68b3391872de437ef8a2...4a4adfbde8e64494d652268e9e8715175e01a762

-- 
View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/9a9d806265a0aa921c3a68b3391872de437ef8a2...4a4adfbde8e64494d652268e9e8715175e01a762
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