[med-svn] [Git][med-team/lastz][master] 10 commits: New upstream version 1.04.52

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / lastz


Commits:
79e00392 by Étienne Mollier at 2025-09-19T22:32:38+02:00
New upstream version 1.04.52
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dedfdb9f by Étienne Mollier at 2025-09-19T22:32:57+02:00
Update upstream source from tag 'upstream/1.04.52'

Update to upstream version '1.04.52'
with Debian dir 1d670067481e4b6d3123934e48fb27571a89b6aa
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61ee8ac2 by Étienne Mollier at 2025-09-19T22:34:22+02:00
d/patches/*: refresh following new upstream release.

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8ef203e4 by Étienne Mollier at 2025-09-19T22:38:20+02:00
nullchar.patch: new: fix build failure with gcc-15.

Closes: #1097151

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a61db3e9 by Étienne Mollier at 2025-09-19T22:38:55+02:00
d/control: declare compliance to standards version 4.7.2.

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d892d4e8 by Étienne Mollier at 2025-09-19T22:43:17+02:00
d/patches/*: normalize Last-Update timestamp.

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365eb8c6 by Étienne Mollier at 2025-09-19T22:43:45+02:00
d/watch: move to v5 watch Github template.

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08770ff6 by Étienne Mollier at 2025-09-19T22:44:31+02:00
d/control: drop Rules-Requires-Root: this is now default.

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f6144397 by Étienne Mollier at 2025-09-19T22:45:15+02:00
nullchar.patch: fix typo caught by lintian.

Gbp-Dch: ignore

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779a6152 by Étienne Mollier at 2025-09-19T22:46:18+02:00
d/changelog: ready for upload to unstable.

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49 changed files:

- .gitignore
- Makefile
- Makefile.warnings
- README.lastz.html
- README.md
- debian/changelog
- debian/control
- debian/patches/fix_signed_char.patch
- + debian/patches/nullchar.patch
- debian/patches/propagate_cflags.patch
- debian/patches/series
- debian/patches/spelling.patch
- debian/watch
- docs/index.html
- src/Makefile
- src/Makefile.warnings
- src/capsule.h
- src/cigar.c
- src/cigar.h
- src/dna_utilities.c
- src/dna_utilities.h
- src/gapped_extend.c
- src/genpaf.c
- src/genpaf.h
- src/infer_scores.c
- src/lastz.c
- src/lastz.h
- src/output.c
- src/output.h
- src/quantum.c
- src/sam.c
- src/sam.h
- src/seed_search.c
- src/seed_search.h
- src/seeds.c
- src/sequences.c
- src/sequences.h
- src/tweener.c
- src/utilities.c
- src/version.mak
- + tabular_tools/README.md
- + tabular_tools/alignment_table.py
- + tabular_tools/alignment_table_aids.py
- + tabular_tools/cigar.py
- + tabular_tools/fasta_file.py
- + tabular_tools/tabular_to_maf.py
- + tabular_tools/two_bit_file.py
- + thesis/rsharris_phd_thesis_2007.pdf
- tools/fasta_softmask_intervals.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/5d0a2134875162396887c3a3c9824cab2eeafa83...779a6152d5dc184b9f13e9db45bc9dbf2fff6696

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View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/5d0a2134875162396887c3a3c9824cab2eeafa83...779a6152d5dc184b9f13e9db45bc9dbf2fff6696
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