[med-svn] [Git][med-team/lastz][upstream] New upstream version 1.04.52

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / lastz


Commits:
79e00392 by Étienne Mollier at 2025-09-19T22:32:38+02:00
New upstream version 1.04.52
- - - - -


41 changed files:

- .gitignore
- Makefile
- Makefile.warnings
- README.lastz.html
- README.md
- docs/index.html
- src/Makefile
- src/Makefile.warnings
- src/capsule.h
- src/cigar.c
- src/cigar.h
- src/dna_utilities.c
- src/dna_utilities.h
- src/gapped_extend.c
- src/genpaf.c
- src/genpaf.h
- src/infer_scores.c
- src/lastz.c
- src/lastz.h
- src/output.c
- src/output.h
- src/quantum.c
- src/sam.c
- src/sam.h
- src/seed_search.c
- src/seed_search.h
- src/seeds.c
- src/sequences.c
- src/sequences.h
- src/tweener.c
- src/utilities.c
- src/version.mak
- + tabular_tools/README.md
- + tabular_tools/alignment_table.py
- + tabular_tools/alignment_table_aids.py
- + tabular_tools/cigar.py
- + tabular_tools/fasta_file.py
- + tabular_tools/tabular_to_maf.py
- + tabular_tools/two_bit_file.py
- + thesis/rsharris_phd_thesis_2007.pdf
- tools/fasta_softmask_intervals.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/lastz/-/commit/79e003927f7b57f60d649959a6830309580d5dfa

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