[med-svn] [Git][med-team/libbpp-phyl][master] 9 commits: cmake-4.patch: new: bump cmake minimum to 3.10.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Fri Sep 26 20:44:55 BST 2025
Étienne Mollier pushed to branch master at Debian Med / libbpp-phyl
Commits:
4d1afb51 by Étienne Mollier at 2025-09-26T21:29:48+02:00
cmake-4.patch: new: bump cmake minimum to 3.10.
Closes: #1113116
- - - - -
c18e27f1 by Étienne Mollier at 2025-09-26T21:30:52+02:00
d/control: declare compliance to standards version 4.7.2.
- - - - -
8de0542f by Étienne Mollier at 2025-09-26T21:31:39+02:00
d/control: remove redundant Rules-Requires-Root: no.
- - - - -
1b8d8588 by Étienne Mollier at 2025-09-26T21:34:27+02:00
d/watch: convert to v5 Github template.
- - - - -
855bcc01 by Étienne Mollier at 2025-09-26T21:35:13+02:00
d/copyright: remove the old FSF address.
- - - - -
5097eca1 by Étienne Mollier at 2025-09-26T21:35:59+02:00
d/*lintian-overrides: remove now unused t64 override.
- - - - -
843b8c79 by Étienne Mollier at 2025-09-26T21:42:06+02:00
d/s/lintian-overrides: glob d/control line number.
This fixes mismatches caused by variability in the d/control file.
- - - - -
396f31cd by Étienne Mollier at 2025-09-26T21:43:41+02:00
d/*lintian-overrides: override conflicts-with-version.
This overrides is necessary in the context of the t64 transition.
- - - - -
b52d1f3f by Étienne Mollier at 2025-09-26T21:44:32+02:00
d/changelog: ready for upload to unstable.
- - - - -
8 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/libbpp-phyl12t64.lintian-overrides
- + debian/patches/cmake-4.patch
- debian/patches/series
- debian/source/lintian-overrides
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+libbpp-phyl (2.4.1-12) unstable; urgency=medium
+
+ * Team upload.
+ * cmake-4.patch: new: bump cmake minimum to 3.10. (Closes: #1113116)
+ * d/control: declare compliance to standards version 4.7.2.
+ * d/control: remove redundant Rules-Requires-Root: no.
+ * d/watch: convert to v5 Github template.
+ * d/copyright: remove the old FSF address.
+ * d/*lintian-overrides: remove now unused t64 override.
+ * d/s/lintian-overrides: glob d/control line number.
+ This fixes mismatches caused by variability in the d/control file.
+ * d/*lintian-overrides: override conflicts-with-version.
+ This overrides is necessary in the context of the t64 transition.
+
+ -- Étienne Mollier <emollier at debian.org> Fri, 26 Sep 2025 21:44:17 +0200
+
libbpp-phyl (2.4.1-11) unstable; urgency=medium
* Since every GCC version bump ends up in a bug caused by the need to
=====================================
debian/control
=====================================
@@ -8,11 +8,10 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
cmake,
d-shlibs (>= 0.106~),
libbpp-seq-dev
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl
Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
-Rules-Requires-Root: no
Package: libbpp-phyl-dev
Architecture: any
=====================================
debian/copyright
=====================================
@@ -25,9 +25,6 @@ License: GPL-2+
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
.
On Debian systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL-2'.
=====================================
debian/libbpp-phyl12t64.lintian-overrides
=====================================
@@ -1,2 +1,2 @@
-libbpp-phyl12t64: package-name-doesnt-match-sonames libbpp-phyl12
+libbpp-phyl12t64: conflicts-with-version libbpp-phyl12 (<< *)
libbpp-phyl12t64: no-symbols-control-file
=====================================
debian/patches/cmake-4.patch
=====================================
@@ -0,0 +1,19 @@
+Description: bump cmake compatibility version to 3.10.
+ This fixes failure to build with cmake 4.
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113116
+Forwarded: no
+Last-Update: 2025-09-26
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- libbpp-phyl.orig/CMakeLists.txt
++++ libbpp-phyl/CMakeLists.txt
+@@ -5,7 +5,7 @@
+ # Francois Gindraud (2017)
+ # Created: 20/08/2009
+
+-cmake_minimum_required (VERSION 2.8.11)
++cmake_minimum_required (VERSION 3.10)
+ project (bpp-phyl CXX)
+
+ # Compile options
=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
spelling
unforce-cxxflags.patch
remove_test_likelihood_nh.patch
+cmake-4.patch
=====================================
debian/source/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
# false-positive from the t64 transition
-libbpp-phyl source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl12t64 -> libbpp-phyl12 [debian/control:38]
+libbpp-phyl source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl12t64 -> libbpp-phyl12 [debian/control:*]
=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
- https://github.com/BioPP/bpp-phyl/tags .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+Template: Github
+Owner: BioPP
+Project: bpp-phyl
View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl/-/compare/9c0510d5c1d66433ef76490c29dbeccaa9939ef9...b52d1f3fa70ad6dd328770611cd043cce2eb5de1
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl/-/compare/9c0510d5c1d66433ef76490c29dbeccaa9939ef9...b52d1f3fa70ad6dd328770611cd043cce2eb5de1
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