[med-svn] [Git][med-team/libbpp-phyl-omics][master] 9 commits: cmake-4.patch: new: bump minimum cmake to 3.10.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Fri Sep 26 21:02:44 BST 2025
Étienne Mollier pushed to branch master at Debian Med / libbpp-phyl-omics
Commits:
9dce89f6 by Étienne Mollier at 2025-09-26T21:53:41+02:00
cmake-4.patch: new: bump minimum cmake to 3.10.
Closes: #1113117
- - - - -
e4e02acb by Étienne Mollier at 2025-09-26T21:55:42+02:00
d/control: remove redundant Rules-Requires-Root: no.
- - - - -
53621a2a by Étienne Mollier at 2025-09-26T21:55:56+02:00
d/watch: convert to v5 Github template.
- - - - -
67dd9677 by Étienne Mollier at 2025-09-26T21:56:13+02:00
d/copyright: remove the old FSF address.
- - - - -
0145c715 by Étienne Mollier at 2025-09-26T21:56:27+02:00
d/*lintian-overrides: remove unused t64 override.
- - - - -
8730e00c by Étienne Mollier at 2025-09-26T21:57:07+02:00
d/*lintian-overrides: add conflicts-with-version override.
- - - - -
6df560c2 by Étienne Mollier at 2025-09-26T21:57:31+02:00
d/s/lintian-overrides: glob d/control line number.
This addresses mismatches due to variability in d/control file.
- - - - -
45c04495 by Étienne Mollier at 2025-09-26T21:58:28+02:00
d/control: declare compliance to standards version 4.7.2.
- - - - -
773f5207 by Étienne Mollier at 2025-09-26T22:02:14+02:00
d/changelog: ready for upload to unstable.
- - - - -
8 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/libbpp-phyl-omics3t64.lintian-overrides
- + debian/patches/cmake-4.patch
- debian/patches/series
- debian/source/lintian-overrides
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+libbpp-phyl-omics (2.4.1-8) unstable; urgency=medium
+
+ * Team upload.
+ * cmake-4.patch: new: bump minimum cmake to 3.10. (Closes: #1113117)
+ * d/control: remove redundant Rules-Requires-Root: no.
+ * d/watch: convert to v5 Github template.
+ * d/copyright: remove the old FSF address.
+ * d/*lintian-overrides: remove unused t64 override.
+ * d/*lintian-overrides: add conflicts-with-version override.
+ * d/s/lintian-overrides: glob d/control line number.
+ This addresses mismatches due to variability in d/control file.
+ * d/control: declare compliance to standards version 4.7.2.
+
+ -- Étienne Mollier <emollier at debian.org> Fri, 26 Sep 2025 21:58:45 +0200
+
libbpp-phyl-omics (2.4.1-7) unstable; urgency=medium
* Since every GCC version bump ends up in a bug caused by the need to
=====================================
debian/control
=====================================
@@ -9,11 +9,10 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
d-shlibs (>= 0.106~),
libbpp-phyl-dev,
libbpp-seq-omics-dev
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl-omics
Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl-omics.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
-Rules-Requires-Root: no
Package: libbpp-phyl-omics-dev
Architecture: any
=====================================
debian/copyright
=====================================
@@ -24,10 +24,6 @@ License: GPL-2+
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
.
On Debian systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL-2'.
=====================================
debian/libbpp-phyl-omics3t64.lintian-overrides
=====================================
@@ -1,2 +1,2 @@
-libbpp-phyl-omics3t64: package-name-doesnt-match-sonames libbpp-phyl-omics3
libbpp-phyl-omics3t64: no-symbols-control-file
+libbpp-phyl-omics3t64: conflicts-with-version libbpp-phyl-omics3 (<< *)
=====================================
debian/patches/cmake-4.patch
=====================================
@@ -0,0 +1,19 @@
+Description: bump minimum cmake to 3.10.
+ This fixes errors and warnings caused by the bump to cmake 4.
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113117
+Forwarded: no
+Last-Update: 2025-09-26
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- libbpp-phyl-omics.orig/CMakeLists.txt
++++ libbpp-phyl-omics/CMakeLists.txt
+@@ -5,7 +5,7 @@
+ # Francois Gindraud (2017)
+ # Created: 30/07/2012
+
+-cmake_minimum_required (VERSION 2.8.11)
++cmake_minimum_required (VERSION 3.10)
+ project (bpp-phyl-omics CXX)
+
+ # Compile options
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
unforce-cxxflags.patch
+cmake-4.patch
=====================================
debian/source/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
# false positive from the t64 transition
-libbpp-phyl-omics source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl-omics3t64 -> libbpp-phyl-omics3 [debian/control:38]
+libbpp-phyl-omics source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl-omics3t64 -> libbpp-phyl-omics3 [debian/control:*]
=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
- https://github.com/BioPP/bpp-phyl-omics/tags .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+Template: Github
+Owner: BioPP
+Project: bpp-phyl-omics
View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl-omics/-/compare/f31ad2fa0d7043192088b5bf75e98bd09c9790de...773f52077329817b2b0049ea169f0f10497effa2
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl-omics/-/compare/f31ad2fa0d7043192088b5bf75e98bd09c9790de...773f52077329817b2b0049ea169f0f10497effa2
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