[med-svn] [Git][med-team/murasaki][master] 4 commits: Add patch to fix FTBFS with boost 1.88 (Closes: #1110615)

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / murasaki


Commits:
6f39d762 by Nilesh Patra at 2025-09-27T15:07:59+05:30
Add patch to fix FTBFS with boost 1.88 (Closes: #1110615)

- - - - -
766be744 by Nilesh Patra at 2025-09-27T15:08:23+05:30
Drop myself from uploaders

- - - - -
a33455e0 by Nilesh Patra at 2025-09-27T15:08:25+05:30
Bump Standards-Version to 4.7.2 (no changes needed)

- - - - -
e6e95962 by Nilesh Patra at 2025-09-27T15:09:17+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/boost-1.88.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+murasaki (1.68.6-15) unstable; urgency=medium
+
+  * Team Upload.
+  * Add patch to fix FTBFS with boost 1.88 (Closes: #1110615)
+  * Drop myself from uploaders
+  * Bump Standards-Version to 4.7.2 (no changes needed)
+
+ -- Nilesh Patra <nilesh at debian.org>  Sat, 27 Sep 2025 15:09:06 +0530
+
 murasaki (1.68.6-14) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -1,6 +1,6 @@
 Source: murasaki
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>, Nilesh Patra <nilesh at debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
                libcrypto++-dev,
                libpstreams-dev,
                mpi-default-dev
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/murasaki
 Vcs-Git: https://salsa.debian.org/med-team/murasaki.git
 Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/


=====================================
debian/patches/boost-1.88.patch
=====================================
@@ -0,0 +1,15 @@
+Description: Replace deprecated branch_path API with parent_path
+ As mentioned in https://www.boost.org/doc/libs/1_50_0/libs/filesystem/doc/deprecated.html
+Author: Nilesh Patra <nilesh at iki.fi>
+Last-Update: 2025-09-27
+--- a/src/seqread.cc
++++ b/src/seqread.cc
+@@ -261,7 +261,7 @@
+   fs::path stitchPath;
+   if(!filename.empty()){//commence the annoying parsing of the filename!
+     fs::path stitchfile(filename);
+-    stitchPath=stitchfile.branch_path();
++    stitchPath=stitchfile.parent_path();
+   }
+   if(verbose)cerr << results[2] << " region from "<< results[3] << " to "<<results[4]<<" is "<<results[1]<<endl;
+   if(!lengthOnly){


=====================================
debian/patches/series
=====================================
@@ -7,3 +7,4 @@ man_syntax.patch
 freebsd.patch
 gcc-6.patch
 fix_mpi.patch
+boost-1.88.patch



View it on GitLab: https://salsa.debian.org/med-team/murasaki/-/compare/5205a78d5da67aac35ccb6af331fe4dcdd65aa2f...e6e9596221408f416b49b85b8f5e9123e66ea39e

-- 
View it on GitLab: https://salsa.debian.org/med-team/murasaki/-/compare/5205a78d5da67aac35ccb6af331fe4dcdd65aa2f...e6e9596221408f416b49b85b8f5e9123e66ea39e
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