[med-svn] [Git][med-team/bifrost][master] 3 commits: d/p/0002-Fix-compilation-error-with-custom-unitig-data.patch:

[Sergio Durigan Junior (@sergiodj)]

Sergio Durigan Junior pushed to branch master at Debian Med / bifrost


Commits:
188bfd15 by Sergio Durigan Junior at 2025-09-27T14:25:37-04:00
d/p/0002-Fix-compilation-error-with-custom-unitig-data.patch:

Fix FTBFS with GCC 15.

Closes: #1096367

- - - - -
3f3e58a1 by Sergio Durigan Junior at 2025-09-27T14:31:36-04:00
d/bifrost.examples: Remove bugs file.

- - - - -
d0f5654b by Sergio Durigan Junior at 2025-09-27T14:33:42-04:00
Update changelog for 1.3.1-2 release

- - - - -


4 changed files:

- − debian/bifrost.examples
- debian/changelog
- + debian/patches/0002-Fix-compilation-error-with-custom-unitig-data.patch
- debian/patches/series


Changes:

=====================================
debian/bifrost.examples deleted
=====================================
@@ -1 +0,0 @@
-debian/tests/data/*.gz


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+bifrost (1.3.1-2) unstable; urgency=medium
+
+  * Team upload.
+  * d/p/0002-Fix-compilation-error-with-custom-unitig-data.patch:
+    Fix FTBFS with GCC 15. (Closes: #1096367)
+  * d/bifrost.examples: Remove bugs file.
+
+ -- Sergio Durigan Junior <sergiodj at debian.org>  Sat, 27 Sep 2025 14:33:42 -0400
+
 bifrost (1.3.1-1) unstable; urgency=medium
 
   * Source-only upload.


=====================================
debian/patches/0002-Fix-compilation-error-with-custom-unitig-data.patch
=====================================
@@ -0,0 +1,37 @@
+From: Lucas van Dijk <info at lucasvandijk.nl>
+Date: Wed, 13 May 2020 16:35:47 -0400
+Subject: Fix compilation error with custom unitig data
+
+Forwarded: yes, https://github.com/pmelsted/bifrost/pull/18
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096367
+---
+ src/DataStorage.hpp | 2 ++
+ src/DataStorage.tcc | 2 +-
+ 2 files changed, 3 insertions(+), 1 deletion(-)
+
+diff --git a/src/DataStorage.hpp b/src/DataStorage.hpp
+index 568808d..e96a586 100755
+--- a/src/DataStorage.hpp
++++ b/src/DataStorage.hpp
+@@ -65,6 +65,8 @@ class DataStorage {
+ 
+         inline size_t getNbColors() const { return color_names.size(); }
+ 
++        inline vector<string> const& getColorNames() const { return color_names; }
++
+         size_t getUnitigColorsSize(const size_t nb_threads = 1) const;
+ 
+         uint64_t getHash(const UnitigColorMap<U>& um) const;
+diff --git a/src/DataStorage.tcc b/src/DataStorage.tcc
+index 22967c9..1a485dc 100755
+--- a/src/DataStorage.tcc
++++ b/src/DataStorage.tcc
+@@ -78,7 +78,7 @@ DataStorage<U>::DataStorage(const DataStorage& o) : color_sets(nullptr), shared_
+ 
+         unitig_cs_link = new atomic<uint64_t>[sz_link];
+ 
+-        for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.sz_link[i].load();
++        for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.unitig_cs_link[i].load();
+     }
+ 
+     if ((o.data != nullptr) && (o.sz_cs != 0)){


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 add_soname.patch
+0002-Fix-compilation-error-with-custom-unitig-data.patch



View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/b16203ac35d4d24b3ed5a8ded57de879f745e911...d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f

-- 
View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/b16203ac35d4d24b3ed5a8ded57de879f745e911...d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f
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