[med-svn] [Git][med-team/libbpp-seq-omics][master] 7 commits: cmake-4.patch: new: bump minimum cmake to 3.10.

Étienne Mollier (@emollier) gitlab at salsa.debian.org
Tue Sep 30 19:03:50 BST 2025



Étienne Mollier pushed to branch master at Debian Med / libbpp-seq-omics


Commits:
724651bb by Étienne Mollier at 2025-09-30T19:58:34+02:00
cmake-4.patch: new: bump minimum cmake to 3.10.

Closes: #1113122

- - - - -
53f37150 by Étienne Mollier at 2025-09-30T19:59:24+02:00
d/control: declare compliance to standards version 4.7.2.

- - - - -
10b131ad by Étienne Mollier at 2025-09-30T19:59:57+02:00
d/s/lintian-overrides: glob d/control line number.

- - - - -
abc555b5 by Étienne Mollier at 2025-09-30T20:00:21+02:00
d/control: drop redundant Rules-Requires-Root: no.

- - - - -
83a626e1 by Étienne Mollier at 2025-09-30T20:01:20+02:00
d/copyright: remove the old FSF address.

- - - - -
012b7c41 by Étienne Mollier at 2025-09-30T20:01:57+02:00
d/watch: bump to v5 Github template.

- - - - -
cd320ef1 by Étienne Mollier at 2025-09-30T20:02:44+02:00
d/changelog: ready for upload to unstable.

- - - - -


7 changed files:

- debian/changelog
- debian/control
- debian/copyright
- + debian/patches/cmake-4.patch
- debian/patches/series
- debian/source/lintian-overrides
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+libbpp-seq-omics (2.4.1-13) unstable; urgency=medium
+
+  * Team upload.
+  * cmake-4.patch: new: bump minimum cmake to 3.10. (Closes: #1113122)
+  * d/control: declare compliance to standards version 4.7.2.
+  * d/s/lintian-overrides: glob d/control line number.
+  * d/control: drop redundant Rules-Requires-Root: no.
+  * d/copyright: remove the old FSF address.
+  * d/watch: bump to v5 Github template.
+
+ -- Étienne Mollier <emollier at debian.org>  Tue, 30 Sep 2025 20:02:26 +0200
+
 libbpp-seq-omics (2.4.1-12) unstable; urgency=medium
 
   * Since every GCC version bump ends up in a bug caused by the need to


=====================================
debian/control
=====================================
@@ -8,11 +8,10 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
                cmake,
                d-shlibs (>= 0.106~),
                libbpp-seq-dev
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
-Rules-Requires-Root: no
 
 Package: libbpp-seq-omics-dev
 Architecture: any


=====================================
debian/copyright
=====================================
@@ -24,10 +24,6 @@ License: GPL-2+
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     GNU General Public License for more details.
- .
-    You should have received a copy of the GNU General Public License
-    along with this package; if not, write to the Free Software
-    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
  .
  On Debian systems, the complete text of the GNU General
  Public License can be found in `/usr/share/common-licenses/GPL-2'.


=====================================
debian/patches/cmake-4.patch
=====================================
@@ -0,0 +1,20 @@
+Description: bump cmake_minimum_required to 3.10.
+ This fixes errors and warnings caused by the version too low with cmake
+ 4 onwards.
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113122
+Forwarded: no
+Last-Update: 2025-09-30
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- libbpp-seq-omics.orig/CMakeLists.txt
++++ libbpp-seq-omics/CMakeLists.txt
+@@ -5,7 +5,7 @@
+ #   Francois Gindraud (2017)
+ # Created: 30/07/2012
+ 
+-cmake_minimum_required (VERSION 2.8.11)
++cmake_minimum_required (VERSION 3.10)
+ project (bpp-seq-omics CXX)
+ 
+ # Compile options


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 spelling
 unforce-cxxflags.patch
+cmake-4.patch


=====================================
debian/source/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
 # false-positive from the t64 transition
-libbpp-seq-omics source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-seq-omics3t64 -> libbpp-seq-omics3 [debian/control:37]
+libbpp-seq-omics source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-seq-omics3t64 -> libbpp-seq-omics3 [debian/control:*]


=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
 
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/BioPP/bpp-seq-omics/tags .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+Template: Github
+Owner: BioPP
+Project: bpp-seq-omics



View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/-/compare/1ade411f3032c57bd2a77c404d1c99a40ec20c28...cd320ef17bd5d4a6a5aaf8cfa2775fd67df6bf51

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/-/compare/1ade411f3032c57bd2a77c404d1c99a40ec20c28...cd320ef17bd5d4a6a5aaf8cfa2775fd67df6bf51
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