[med-svn] [Git][med-team/cwltool][master] 8 commits: d/control: test & recommend the newly free'd galaxy-tool-util (woohoo!).

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / cwltool


Commits:
4b702c6d by Michael R. Crusoe at 2026-04-14T14:18:26+02:00
d/control: test & recommend the newly free'd galaxy-tool-util (woohoo!).

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51ce98c8 by Michael R. Crusoe at 2026-04-14T14:18:58+02:00
New upstream version

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71da57db by Michael R. Crusoe at 2026-04-14T14:18:59+02:00
New upstream version 3.2.20260411152607
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cfe3d0aa by Michael R. Crusoe at 2026-04-14T14:19:12+02:00
Update upstream source from tag 'upstream/3.2.20260411152607'

Update to upstream version '3.2.20260411152607'
with Debian dir 76e123fbb013fc7256e36b9d0697cecbb6493410
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773e4e41 by Michael R. Crusoe at 2026-04-14T14:19:13+02:00
Standards-Version: 4.7.4 (routine-update)

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371fdc71 by Michael R. Crusoe at 2026-04-14T14:21:12+02:00
Refreshed the patches.

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b96db5af by Michael R. Crusoe at 2026-04-14T14:31:40+02:00
d/rules: skip 2 more tests that require internet access.

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1b96b05c by Michael R. Crusoe at 2026-04-14T17:46:43+02:00
release

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83 changed files:

- .git-blame-ignore-revs
- .github/workflows/ci-tests.yml
- .github/workflows/quay-publish.yml
- .github/workflows/wheels.yml
- .gitignore
- Makefile
- PKG-INFO
- build-cwltool-docker.sh
- cwltool.Dockerfile
- cwltool.egg-info/PKG-INFO
- cwltool.egg-info/SOURCES.txt
- cwltool.egg-info/requires.txt
- − cwltool/_version.py
- cwltool/builder.py
- cwltool/checker.py
- cwltool/command_line_tool.py
- cwltool/context.py
- cwltool/cuda.py
- cwltool/cwlprov/provenance_profile.py
- cwltool/cwlprov/ro.py
- cwltool/cwlprov/writablebagfile.py
- cwltool/cwlrdf.py
- cwltool/docker.py
- cwltool/executors.py
- cwltool/factory.py
- cwltool/job.py
- cwltool/load_tool.py
- cwltool/main.py
- cwltool/mutation.py
- cwltool/pack.py
- cwltool/pathmapper.py
- cwltool/process.py
- cwltool/procgenerator.py
- cwltool/secrets.py
- cwltool/singularity.py
- cwltool/software_requirements.py
- cwltool/subgraph.py
- cwltool/update.py
- cwltool/utils.py
- cwltool/workflow.py
- cwltool/workflow_job.py
- debian/changelog
- debian/control
- debian/patches/disable_prov
- debian/rules
- docs/requirements.txt
- lint-requirements.txt
- mypy-requirements.txt
- pyproject.toml
- requirements.txt
- setup.py
- test-requirements.txt
- + tests/2205.cwl
- + tests/single_all_non_null.cwl
- + tests/single_all_non_null_err.cwl
- tests/test_conditionals.py
- tests/test_content_type.py
- tests/test_context.py
- tests/test_cuda.py
- tests/test_cwl_output_json.py
- tests/test_docker.py
- tests/test_examples.py
- tests/test_http_input.py
- tests/test_load_tool.py
- tests/test_loop.py
- tests/test_loop_ext.py
- tests/test_main_parsed_args.py
- tests/test_mpi.py
- tests/test_override.py
- tests/test_pack.py
- tests/test_path_checks.py
- tests/test_pathmapper.py
- tests/test_provenance.py
- tests/test_secrets.py
- tests/test_singularity.py
- tests/test_stdout_stderr_log_dir.py
- tests/test_streaming.py
- tests/test_target.py
- tests/test_tmpdir.py
- + tests/wf/print_deps_with_workflows_having_namespace_location_steps.cwl
- tests/wf/trick_defaults.cwl
- tests/wf/trick_defaults2.cwl
- tox.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cwltool/-/compare/983082dc5f9f92f043fc5abc8e133af5e868a27f...1b96b05cf94d29551c3825090709e597f2848047

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View it on GitLab: https://salsa.debian.org/med-team/cwltool/-/compare/983082dc5f9f92f043fc5abc8e133af5e868a27f...1b96b05cf94d29551c3825090709e597f2848047
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