[med-svn] [Git][med-team/mapdamage][master] 8 commits: Packaging update (routine-update)
Charles Plessy (@plessy)
gitlab at salsa.debian.org
Thu Apr 16 00:53:22 BST 2026
Charles Plessy pushed to branch master at Debian Med / mapdamage
Commits:
e9b3d205 by Charles Plessy at 2026-04-16T08:47:55+09:00
Packaging update (routine-update)
- - - - -
4f698f0d by Charles Plessy at 2026-04-16T08:47:55+09:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
4d1c2c4d by Charles Plessy at 2026-04-16T08:48:36+09:00
Changes made by cme
- - - - -
6d922cfa by Charles Plessy at 2026-04-16T08:48:44+09:00
Restrict to 64-bits architectures (routine-update)
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11d6c551 by Charles Plessy at 2026-04-16T08:48:48+09:00
Restrict to little-endian architectures (routine-update)
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12154ab2 by Charles Plessy at 2026-04-16T08:49:00+09:00
Set upstream metadata fields: Bug-Database, Documentation, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
- - - - -
18ef316d by Charles Plessy at 2026-04-16T08:49:01+09:00
debputy lint --auto-fix (routine-update)
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7bd6c1b9 by Charles Plessy at 2026-04-16T08:50:59+09:00
routine-update: Ready to upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+mapdamage (2.2.3+dfsg-3) unstable; urgency=medium
+
+ * Team upload.
+ * Packaging update (routine-update)
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Restrict to 64-bits architectures (routine-update)
+ * Restrict to little-endian architectures (routine-update)
+ * Set upstream metadata fields: Bug-Database, Documentation, Repository,
+ Repository-Browse.
+ * debputy lint --auto-fix (routine-update)
+
+ -- Charles Plessy <plessy at debian.org> Thu, 16 Apr 2026 08:49:02 +0900
+
mapdamage (2.2.3+dfsg-2) unstable; urgency=medium
* d/rules: fix mishap with directory handling. (Closes: #1122039)
=====================================
debian/control
=====================================
@@ -1,41 +1,45 @@
Source: mapdamage
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
- Étienne Mollier <emollier at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Étienne Mollier <emollier at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- dh-sequence-python3,
- python3-all-dev:native,
- libpython3-all-dev,
- pybuild-plugin-pyproject,
- python3-setuptools,
- python3-pysam <!nocheck>,
- seqtk <!nocheck>,
- r-base-core <!nocheck>,
- r-cran-gam <!nocheck>,
- r-cran-ggplot2 <!nocheck>,
- r-cran-inline <!nocheck>
-Standards-Version: 4.7.2
+Build-Depends:
+ debhelper-compat (= 13),
+ dh-sequence-python3,
+ python3-all-dev:native,
+ libpython3-all-dev,
+ pybuild-plugin-pyproject,
+ python3-setuptools,
+ python3-pysam <!nocheck>,
+ seqtk <!nocheck>,
+ r-base-core <!nocheck>,
+ r-cran-gam <!nocheck>,
+ r-cran-ggplot2 <!nocheck>,
+ r-cran-inline <!nocheck>,
+ architecture-is-64-bit,
+ architecture-is-little-endian,
Vcs-Browser: https://salsa.debian.org/med-team/mapdamage
Vcs-Git: https://salsa.debian.org/med-team/mapdamage.git
Homepage: https://ginolhac.github.io/mapDamage/
Package: mapdamage
Architecture: any
-Depends: ${python3:Depends},
- ${shlibs:Depends},
- ${misc:Depends},
- r-base-core,
- r-cran-gam,
- r-cran-ggplot2,
- r-cran-inline,
- seqtk,
- python3-pysam,
- r-cran-rcpp,
- r-cran-rcppgsl,
- libopenblas-dev | libblas-dev | libatlas-base-dev | libblas.so,
- libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so
+Depends:
+ ${python3:Depends},
+ ${shlibs:Depends},
+ ${misc:Depends},
+ r-base-core,
+ r-cran-gam,
+ r-cran-ggplot2,
+ r-cran-inline,
+ seqtk,
+ python3-pysam,
+ r-cran-rcpp,
+ r-cran-rcppgsl,
+ libopenblas-dev | libblas-dev | libatlas-base-dev | libblas.so,
+ libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so,
Description: tracking and quantifying damage patterns in ancient DNA sequences
MapDamage is a computational framework written in Python and R, which
tracks and quantifies DNA damage patterns among ancient DNA sequencing
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,6 @@
+Bug-Database: https://github.com/ginolhac/mapDamage/issues
Bug-Submit: https://github.com/ginolhac/mapDamage/issues/new
+Documentation: https://ginolhac.github.io/mapDamage/
Reference:
- Author: >
Hákon Jónsson and Aurélien Ginolhac and Mikkel Schubert and
@@ -29,3 +31,5 @@ Registry:
Bug-Database: https://github.com/ginolhac/mapDamage/issues
Repository: https://github.com/ginolhac/mapDamage.git
Repository-Browse: https://github.com/ginolhac/mapDamage
+Repository: https://github.com/ginolhac/mapDamage.git
+Repository-Browse: https://github.com/ginolhac/mapDamage
=====================================
debian/watch
=====================================
@@ -3,5 +3,5 @@ Version: 5
Template: Github
Owner: ginolhac
Project: mapDamage
-Dversionmangle: auto
-Repacksuffix: +dfsg
+Dversion-Mangle: auto
+Repack-Suffix: +dfsg
View it on GitLab: https://salsa.debian.org/med-team/mapdamage/-/compare/551192c8b784912b88c3d99bd9ee62668895e99e...7bd6c1b9e9fc31dfa4e7b25ed546ae235b7600dd
--
View it on GitLab: https://salsa.debian.org/med-team/mapdamage/-/compare/551192c8b784912b88c3d99bd9ee62668895e99e...7bd6c1b9e9fc31dfa4e7b25ed546ae235b7600dd
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