[med-svn] [Git][med-team/genomethreader][master] debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16

[Marcos Talau (@talau)]

Marcos Talau pushed to branch master at Debian Med / genomethreader


Commits:
95a84af3 by Marcos Talau at 2026-04-21T18:54:27-03:00
debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/fix-build-with-gcc16.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+genomethreader (1.7.3+dfsg-12) unstable; urgency=medium
+
+  * Team upload.
+  * debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16.
+    (Closes: #1133490)
+
+ -- Marcos Talau <talau at debian.org>  Tue, 21 Apr 2026 18:52:08 -0300
+
 genomethreader (1.7.3+dfsg-11) unstable; urgency=medium
 
   * Fix shuffled build.


=====================================
debian/patches/fix-build-with-gcc16.patch
=====================================
@@ -0,0 +1,21 @@
+Description: Fix build with gcc-16
+Author: Marcos Talau <talau at debian.org>
+Bug-Debian: https://bugs.debian.org/1133490
+Last-Update: 2026-04-21
+
+--- genomethreader-1.7.3+dfsg.orig/src/gth/backtrace_path.c
++++ genomethreader-1.7.3+dfsg/src/gth/backtrace_path.c
+@@ -763,12 +763,11 @@ bool gth_backtrace_path_last_is_intron(c
+ void gth_backtrace_path_reverse(GthBacktracePath *bp)
+ {
+   Editoperation *front, *back, tmp;
+-  GtUword i = 0;
+   gt_assert(bp);
+   for (front = gt_array_get_space(bp->editoperations),
+        back  = (Editoperation*) gt_array_get_space(bp->editoperations) +
+                gt_array_size(bp->editoperations) - 1;
+-       front < back; front++, back--, i++) {
++       front < back; front++, back--) {
+     tmp = *front;
+     *front = *back;
+     *back = tmp;


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@ reproducible.patch
 disable-fastdp-tests.patch
 extend-clean.patch
 config-dependencies.patch
+fix-build-with-gcc16.patch



View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/commit/95a84af37d0d7d91cd6015afad4207caf6cd6aef

-- 
View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/commit/95a84af37d0d7d91cd6015afad4207caf6cd6aef
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