[med-svn] [Git][med-team/stacks][master] debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16

[Marcos Talau (@talau)]

Marcos Talau pushed to branch master at Debian Med / stacks


Commits:
2dde320b by Marcos Talau at 2026-04-21T22:58:17-03:00
debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/fix-build-with-gcc16.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+stacks (2.68+dfsg-4) unstable; urgency=medium
+
+  * Team upload.
+  * debian/patches/fix-build-with-gcc16.patch: New. Fix FTBFS with gcc-16.
+    (Closes: #1133636)
+
+ -- Marcos Talau <talau at debian.org>  Tue, 21 Apr 2026 22:57:02 -0300
+
 stacks (2.68+dfsg-3) UNRELEASED; urgency=medium
 
   * RisR.patch: remove Date field that interferes with gbp pq and dgit.


=====================================
debian/patches/fix-build-with-gcc16.patch
=====================================
@@ -0,0 +1,16 @@
+Description: Fix build with gcc-16
+Author: Marcos Talau <talau at debian.org>
+Bug-Debian: https://bugs.debian.org/1133636
+Last-Update: 2026-04-21
+
+--- stacks-2.68+dfsg.orig/src/models.cc
++++ stacks-2.68+dfsg/src/models.cc
+@@ -29,6 +29,8 @@
+ //
+ #include "models.h"
+ 
++#include <limits>
++
+ using namespace std;
+ 
+ vector<pair<char, int>> sort_acgt(const map<char, int>&);


=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ use_debian_packaged_htslib.patch
 fix_spelling_errors.patch
 change_program_exit_to_success.patch
 offer_help_option_for_stacks_gdb.patch
+fix-build-with-gcc16.patch



View it on GitLab: https://salsa.debian.org/med-team/stacks/-/commit/2dde320becad29cdd8833ec0cf36e3521bfb31a5

-- 
View it on GitLab: https://salsa.debian.org/med-team/stacks/-/commit/2dde320becad29cdd8833ec0cf36e3521bfb31a5
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260422/dd1e3ecc/attachment-0001.htm>