[med-svn] [Git][med-team/snakemake][debian-v7] 2 commits: Import Debian changes 7.32.4-8
Michael R. Crusoe (@crusoe)
gitlab at salsa.debian.org
Sat Apr 25 11:30:30 BST 2026
Michael R. Crusoe pushed to branch debian-v7 at Debian Med / snakemake
Commits:
5048cdda by Alexandre Detiste at 2026-04-25T12:00:35+02:00
Import Debian changes 7.32.4-8
snakemake (7.32.4-8) unstable; urgency=medium
.
* Team upload.
* Replace dependency on transitional python3-tz with new python3-pytz
* Remove Py2 vs 3 crumb from d/rules
- - - - -
fdc60c10 by Bastian Germann at 2026-04-25T12:00:52+02:00
Import Debian changes 7.32.4-8.1
snakemake (7.32.4-8.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Drop unused ratelimiter dependency. (Closes: #1124258)
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+snakemake (7.32.4-8.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Drop unused ratelimiter dependency. (Closes: #1124258)
+
+ -- Bastian Germann <bage at debian.org> Mon, 29 Dec 2025 16:03:31 +0100
+
+snakemake (7.32.4-8) unstable; urgency=medium
+
+ * Team upload.
+ * Replace dependency on transitional python3-tz with new python3-pytz
+ * Remove Py2 vs 3 crumb from d/rules
+
+ -- Alexandre Detiste <tchet at debian.org> Wed, 03 Dec 2025 16:47:10 +0100
+
snakemake (7.32.4-7) unstable; urgency=medium
* Tests: treat more tests as flaky (try 3 times)
=====================================
debian/control
=====================================
@@ -33,7 +33,6 @@ Build-Depends: ca-certificates,
python3-pygments <!nocheck>,
python3-pytest <!nocheck>,
python3-pytools <!nocheck>,
- python3-ratelimiter,
python3-recommonmark <!nodoc>,
python3-requests,
python3-requests-mock <!nocheck>,
@@ -55,11 +54,10 @@ Build-Depends: ca-certificates,
python3-yte <!nocheck>,
r-cran-rmarkdown,
stress <!nocheck>
-Standards-Version: 4.7.0
+Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/snakemake
Vcs-Git: https://salsa.debian.org/med-team/snakemake.git
Homepage: https://snakemake.readthedocs.io/
-Rules-Requires-Root: no
Package: snakemake
Architecture: all
@@ -76,7 +74,6 @@ Depends: ${misc:Depends},
python3-packaging,
python3-psutil,
python3-pulp (>= 2.0~),
- python3-ratelimiter,
python3-requests,
python3-toposort,
python3-wrapt,
=====================================
debian/rules
=====================================
@@ -4,10 +4,10 @@
# export DH_VERBOSE = 1
export PYBUILD_NAME=snakemake
-export PYBUILD_DESTDIR_python3=debian/snakemake
+export PYBUILD_DESTDIR=debian/snakemake
# copy the tests and run them from there to avoid having to clean up after them
-export PYBUILD_BEFORE_TEST_python3=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir}
-export PYBUILD_AFTER_TEST_python3=rm -fr {build_dir}/bin {build_dir}/tests
+export PYBUILD_BEFORE_TEST=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir}
+export PYBUILD_AFTER_TEST=rm -fr {build_dir}/bin {build_dir}/tests
export PYBUILD_TEST_ARGS=python{version} -m pytest -o faulthandler_timeout=60 -v {build_dir}/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328 and not test_pipes_fail and not test_pipes and not test_multicomp_group_jobs and not test_group_job_resources_with_pipe'
# Skipped because they download executables (which is forbidden in Debian buildd and debci)
@@ -54,7 +54,7 @@ execute_after_dh_auto_build:
execute_after_dh_installdocs:
find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf
-# the modules.sh is a workaround for #928826; putting it in PYBUILD_BEFORE_TEST_python3 doesn't work
+# the modules.sh is a workaround for #928826; putting it in PYBUILD_BEFORE_TEST doesn't work
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
. /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/10f9649445ba64446977c5782641923ecbf33898...fdc60c10ad4b8fb3e3f5682f86622966f2c05aa2
--
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/10f9649445ba64446977c5782641923ecbf33898...fdc60c10ad4b8fb3e3f5682f86622966f2c05aa2
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