[med-svn] [Git][med-team/hilive][master] 5 commits: Fix Last-Update to DEP3 standard
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Apr 27 16:12:18 BST 2026
Andreas Tille pushed to branch master at Debian Med / hilive
Commits:
afc844c4 by Andreas Tille at 2026-04-27T16:59:46+02:00
Fix Last-Update to DEP3 standard
- - - - -
b5e3195c by Andreas Tille at 2026-04-27T17:02:34+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
b89f4ae9 by Andreas Tille at 2026-04-27T17:06:31+02:00
Changes made by cme
- - - - -
91f1793d by Andreas Tille at 2026-04-27T17:06:33+02:00
Drop default 'Rules-Requires-Root: no' from debian/control (routine- update)
- - - - -
e5ba859f by Andreas Tille at 2026-04-27T17:10:41+02:00
routine-update: Ready to upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/patches/do_not_set_rpath.patch
- debian/patches/use_dynamic_linking.patch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-hilive (2.0a-6) UNRELEASED; urgency=medium
+hilive (2.0a-6) unstable; urgency=medium
* Drop libboost-system-dev from Build-Depends
Closes: #1134916
@@ -6,8 +6,14 @@ hilive (2.0a-6) UNRELEASED; urgency=medium
* Do not try to use component system from Boost which was removed
in version 1.90
Closes: #1134916
-
- -- Andreas Tille <tille at debian.org> Mon, 27 Apr 2026 16:04:32 +0200
+ * Fix Last-Update to DEP3 standard
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop default 'Rules-Requires-Root: no' from debian/control (routine-
+ update)
+
+ -- Andreas Tille <tille at debian.org> Mon, 27 Apr 2026 17:06:39 +0200
hilive (2.0a-5) experimental; urgency=medium
=====================================
debian/control
=====================================
@@ -1,29 +1,30 @@
Source: hilive
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- cmake,
- libboost-filesystem-dev,
- libboost-iostreams-dev,
- libboost-program-options-dev,
- libhts-dev,
- libseqan2-dev,
- zlib1g-dev,
- liblz4-dev,
- chrpath,
- discount
-Standards-Version: 4.7.0
+Build-Depends:
+ debhelper-compat (= 13),
+ cmake,
+ libboost-filesystem-dev,
+ libboost-iostreams-dev,
+ libboost-program-options-dev,
+ libhts-dev,
+ libseqan2-dev,
+ zlib1g-dev,
+ liblz4-dev,
+ chrpath,
+ discount,
Vcs-Browser: https://salsa.debian.org/med-team/hilive
Vcs-Git: https://salsa.debian.org/med-team/hilive.git
Homepage: https://gitlab.com/rki_bioinformatics/HiLive2
-Rules-Requires-Root: no
Package: hilive
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
Description: realtime alignment of Illumina reads
HiLive is a read mapping tool that maps Illumina HiSeq (or comparable)
reads to a reference genome right in the moment when they are produced.
=====================================
debian/patches/do_not_set_rpath.patch
=====================================
@@ -2,7 +2,7 @@ From: Andreas Tille <tille at debian.org>
Date: Fri, 29 Jul 2016 14:17:48 +0200
Subject: Do not set rpath
-Last-Update: Thu, 28 Jul 2016 15:13:14 +0200
+Last-Update: 2016-07-28
Unfortunately this does not work and chrpath needs to be used.
=====================================
debian/patches/use_dynamic_linking.patch
=====================================
@@ -3,7 +3,7 @@ Date: Mon, 7 Oct 2019 13:35:34 +0200
Subject: Do not link statically;
-pthread option (otherwise its -lpthread which does not work)
-Last-Update: Mon, 07 Oct 2019 11:02:50 +0200
+Last-Update: 2019-10-07
---
CMakeLists.txt | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
View it on GitLab: https://salsa.debian.org/med-team/hilive/-/compare/02487b0ff72e60884ae3c61750ceb7ffb874e82a...e5ba859fe7cb3c70bfc805f6b55c29743c753ef9
--
View it on GitLab: https://salsa.debian.org/med-team/hilive/-/compare/02487b0ff72e60884ae3c61750ceb7ffb874e82a...e5ba859fe7cb3c70bfc805f6b55c29743c753ef9
You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260427/264c9e81/attachment-0001.htm>
More information about the debian-med-commit
mailing list