[med-svn] [Git][med-team/python-biopython][upstream] New upstream version 1.88+dfsg

[Karsten Schöke (@karso)]

Karsten Schöke pushed to branch upstream at Debian Med / python-biopython


Commits:
a8c8cc53 by Karsten Schöke at 2026-08-07T13:41:24+02:00
New upstream version 1.88+dfsg
- - - - -


67 changed files:

- .appveyor.yml
- .circleci/config.yml
- .github/deploy_docs.sh
- .github/workflows/ci.yml
- .mypy.ini
- .pre-commit-config.yaml
- Bio/Affy/CelFile.py
- Bio/Align/AlignInfo.py
- Bio/Align/__init__.py
- Bio/Align/bigbed.py
- Bio/Align/bigmaf.py
- Bio/Align/bigpsl.py
- Bio/Align/sam.py
- Bio/Blast/_parser.py
- Bio/GenBank/Record.py
- Bio/GenBank/Scanner.py
- Bio/Nexus/Nexus.py
- Bio/Nexus/Trees.py
- Bio/PDB/Atom.py
- Bio/PDB/PDBIO.py
- Bio/PDB/internal_coords.py
- Bio/PDB/vectors.py
- Bio/Pathway/__init__.py
- Bio/Phylo/BaseTree.py
- Bio/Phylo/CDAO.py
- Bio/Phylo/NewickIO.py
- Bio/Restriction/Restriction.py
- Bio/SearchIO/InfernalIO/infernal_tab.py
- Bio/SearchIO/_model/hsp.py
- Bio/Seq.py
- Bio/SeqIO/AceIO.py
- Bio/SeqIO/FastaIO.py
- Bio/SeqIO/GckIO.py
- Bio/SeqIO/GfaIO.py
- Bio/SeqIO/Interfaces.py
- Bio/SeqIO/PdbIO.py
- Bio/SeqIO/PhdIO.py
- Bio/SeqIO/QualityIO.py
- Bio/SeqIO/SffIO.py
- Bio/SeqIO/SnapGeneIO.py
- Bio/SeqIO/SwissIO.py
- Bio/SeqIO/TabIO.py
- Bio/SeqIO/UniprotIO.py
- Bio/SeqIO/XdnaIO.py
- Bio/SeqIO/__init__.py
- Bio/SeqRecord.py
- Bio/__init__.py
- Bio/motifs/jaspar/db.py
- Bio/pairwise2.py
- BioSQL/BioSeqDatabase.py
- CONTRIB.rst
- CONTRIBUTING.rst
- DEPRECATED.rst
- Doc/Tutorial/chapter_motifs.rst
- Doc/Tutorial/chapter_pairwise.rst
- NEWS.rst
- README.rst
- Scripts/Restriction/ranacompiler.py
- Tests/common_BioSQL.py
- Tests/seq_tests_common.py
- Tests/test_Align_Alignment.py
- Tests/test_Align_bigbed.py
- Tests/test_Align_psl.py
- Tests/test_GenBank.py
- Tests/test_PDB_alphafold_db.py
- Tests/test_Phylo.py
- − hht2+-1000.dna


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/commit/a8c8cc539596527a517c2a1ae90eb0a35bca5fbe

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