[med-svn] [Git][med-team/infernal][master] 7 commits: Standards-Version: 4.7.4 (routine-update)
Charles Plessy (@plessy)
gitlab at salsa.debian.org
Sat Aug 8 08:41:08 BST 2026
Charles Plessy pushed to branch master at Debian Med / infernal
Commits:
b3053906 by Charles Plessy at 2026-08-08T13:44:02+09:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
bc7b8364 by Charles Plessy at 2026-08-08T13:44:29+09:00
Changes made by cme
- - - - -
0f69413f by Charles Plessy at 2026-08-08T13:44:32+09:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
fad48273 by Charles Plessy at 2026-08-08T13:44:49+09:00
Replace FSF postal address with a reference to https://www.gnu.org/licenses/.
Changes-By: lintian-brush
Fixes: lintian: source: old-fsf-address-in-copyright-file
See-also: https://lintian.debian.org/tags/old-fsf-address-in-copyright-file.html
- - - - -
207dcfe4 by Charles Plessy at 2026-08-08T13:44:53+09:00
Set upstream metadata fields: Bug-Submit.
Changes-By: lintian-brush
Fixes: lintian: source: upstream-metadata-missing-bug-tracking [debian/upstream/metadata]
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
- - - - -
2f32544f by Charles Plessy at 2026-08-08T16:27:02+09:00
Install all easel miniapps.
Closes: #1143882
Please note that the files might distirbuted via the hmmer package in future.
- - - - -
ecab6726 by Charles Plessy at 2026-08-08T16:40:00+09:00
Ready for debpush
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/rules
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,21 @@
-infernal (1.1.5-4) UNRELEASED; urgency=medium
+infernal (1.1.5-4) unstable; urgency=medium
+ [ Michael R. Crusoe ]
* d/bin/cmalign: make machine architecture query quieter and not reliant
on the non-essential package dpkg-dev.
- -- Michael R. Crusoe <crusoe at debian.org> Sun, 30 Nov 2025 11:29:10 +0100
+ [ Charles Plessy ]
+ * Install all easel miniapps. Closes: #1143882. Please note that the
+ files might distirbuted via the hmmer package in future.
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Replace FSF postal address with a reference to
+ https://www.gnu.org/licenses/.
+ * Set upstream metadata fields: Bug-Submit.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 08 Aug 2026 16:28:11 +0900
infernal (1.1.5-3) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,27 +1,28 @@
Source: infernal
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>,
- Andreas Tille <tille at debian.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- libperl4-corelibs-perl,
- python3
#Build-Depends-Indep: texlive-latex-recommended,
# texlive-latex-extra,
# texlive-fonts-recommended,
# rman,
# hmmer-examples
-Standards-Version: 4.7.0
+Standards-Version: 4.7.4
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders:
+ Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>,
+Section: science
+Build-Depends:
+ debhelper-compat (= 13),
+ libperl4-corelibs-perl,
+ python3,
Vcs-Browser: https://salsa.debian.org/med-team/infernal
Vcs-Git: https://salsa.debian.org/med-team/infernal.git
Homepage: http://eddylab.org/infernal/
-Rules-Requires-Root: no
Package: infernal
Architecture: any-amd64 any-i386 arm64
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
Description: inference of RNA secondary structural alignments
Infernal ("INFERence of RNA ALignment") searches DNA sequence
databases for RNA structure and sequence similarities. It provides an
@@ -36,9 +37,10 @@ Description: inference of RNA secondary structural alignments
Package: infernal-doc
Architecture: all
-Section: doc
Multi-Arch: foreign
-Depends: ${misc:Depends}
+Section: doc
+Depends:
+ ${misc:Depends},
Description: inference of RNA secondary structural alignments – documentation
Infernal ("INFERence of RNA ALignment") searches DNA sequence
databases for RNA structure and sequence similarities. It provides an
=====================================
debian/copyright
=====================================
@@ -108,8 +108,6 @@ License: GPL-3
General Public License for more details.
.
You should have received a copy of the GNU General Public License
- along with this software, in the file LICENSE; if not, write to the
- Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
- MA 02110-1301, USA or see http://www.gnu.org/
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
Comment: On Debian systems, the complete text of the GNU General Public
License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
=====================================
debian/rules
=====================================
@@ -74,9 +74,7 @@ override_dh_installexamples-arch:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
cp ./src/itest_brute $(sampledir_lib)/src/
endif
- cp ./easel/miniapps/esl-reformat $(sampledir_lib)/easel/miniapps/
- cp ./easel/miniapps/esl-shuffle $(sampledir_lib)/easel/miniapps/
- cp ./easel/miniapps/esl-sfetch $(sampledir_lib)/easel/miniapps/
+ find ./easel/miniapps/ -maxdepth 1 -type f -name "esl-*" ! -name "*itest*" -executable -exec cp -t $(sampledir_lib)/easel/miniapps/ {} +
cd $(sampledir) && ln -s ../../../../lib/$(DEB_TARGET_MULTIARCH)/$(DEB_SOURCE)/examples/easel ./easel \
&& ln -s ../../../../lib/$(DEB_TARGET_MULTIARCH)/$(DEB_SOURCE)/examples/src ./src
cp -aR testsuite $(sampledir)/
=====================================
debian/upstream/metadata
=====================================
@@ -1,6 +1,7 @@
Repository: https://github.com/EddyRivasLab/infernal.git
Repository-Browse: https://github.com/EddyRivasLab/infernal
Bug-Database: https://github.com/EddyRivasLab/infernal/issues
+Bug-Submit: https://github.com/EddyRivasLab/infernal/issues/new
Reference:
author: Nawrocki, Eric P. and Kolbe, Diana L. and Eddy, Sean R.
title: "Infernal 1.0: inference of RNA alignments"
View it on GitLab: https://salsa.debian.org/med-team/infernal/-/compare/0cfe8884cfabc09e11d3761dc743af932ffaea77...ecab6726193d44dbd1936e8a018d607167251d26
--
View it on GitLab: https://salsa.debian.org/med-team/infernal/-/compare/0cfe8884cfabc09e11d3761dc743af932ffaea77...ecab6726193d44dbd1936e8a018d607167251d26
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