[med-svn] [Git][med-team/ivar][master] 5 commits: Standards-Version: 4.7.4 (routine-update)

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ivar


Commits:
eb9912a5 by Andreas Tille at 2026-08-13T10:57:13+02:00
Standards-Version: 4.7.4 (routine-update)

- - - - -
a8626f7c by Andreas Tille at 2026-08-13T10:59:56+02:00
Changes made by cme

- - - - -
cb205b09 by Andreas Tille at 2026-08-13T11:01:14+02:00
routine-update: Ready to upload to unstable

- - - - -
e40f2613 by Andreas Tille at 2026-08-13T11:03:03+02:00
Add comment with relation to upstream issue

- - - - -
417478a2 by Andreas Tille at 2026-08-13T11:10:16+02:00
Forward patch

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/patches/Fix-warning.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,12 @@
-ivar (1.4.4+dfsg-3) UNRELEASED; urgency=medium
+ivar (1.4.4+dfsg-3) unstable; urgency=medium
 
   * d/watch: version=5
   * d/rules: Add -std=c++17
     Closes: #1143665
+  * Standards-Version: 4.7.4 (routine-update)
+  * Reflow Uploaders field (cme)
 
- -- Andreas Tille <tille at debian.org>  Thu, 13 Aug 2026 10:14:43 +0200
+ -- Andreas Tille <tille at debian.org>  Thu, 13 Aug 2026 11:00:09 +0200
 
 ivar (1.4.4+dfsg-2) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -1,20 +1,24 @@
 Source: ivar
+Standards-Version: 4.7.4
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
-           Étienne Mollier <emollier at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Étienne Mollier <emollier at debian.org>,
 Section: science
-Build-Depends: debhelper-compat (= 13),
-               libhts-dev
-Standards-Version: 4.7.3
+Build-Depends:
+ debhelper-compat (= 14),
+ libhts-dev,
 Vcs-Browser: https://salsa.debian.org/med-team/ivar
 Vcs-Git: https://salsa.debian.org/med-team/ivar.git
 Homepage: https://github.com/andersen-lab/ivar
 
 Package: ivar
 Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
-Recommends: samtools
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Recommends:
+ samtools,
 Description: functions broadly useful for viral amplicon-based sequencing
  iVar is a computational package that contains functions broadly useful
  for viral amplicon-based sequencing. Additional tools for metagenomic
@@ -32,10 +36,11 @@ Description: functions broadly useful for viral amplicon-based sequencing
 
 Package: ivar-doc
 Architecture: all
-Section: doc
-Depends: ${misc:Depends},
-         node-jquery
 Multi-Arch: foreign
+Section: doc
+Depends:
+ ${misc:Depends},
+ node-jquery,
 Description: functions broadly useful for viral amplicon-based sequencing (documentation)
  iVar is a computational package that contains functions broadly useful
  for viral amplicon-based sequencing. Additional tools for metagenomic


=====================================
debian/patches/Fix-warning.patch
=====================================
@@ -1,6 +1,8 @@
 Description: Initialise array in testfile explicitly to empty string array
 Author: Nilesh Patra <nilesh at debian.org>
 Last-Update: 2021-08-28
+Forwarded: https://github.com/andersen-lab/ivar/issues/192
+
 --- ivar.orig/tests/test_variants.cpp
 +++ ivar/tests/test_variants.cpp
 @@ -60,7 +60,7 @@


=====================================
debian/rules
=====================================
@@ -3,6 +3,7 @@
 export LC_ALL=C.UTF-8
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
+# This can be removed once upstream has fixed https://github.com/andersen-lab/ivar/issues/191
 export DEB_CXXFLAGS_MAINT_APPEND = -std=c++17
 
 # Fix a shift against reference data on i386 causing autopkgtest regressions.



View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/401148dd18d079a6c404528e8b07cd5f3e7e3c74...417478a29219ca2824a3ea845e4d1708c9a9a412

-- 
View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/401148dd18d079a6c404528e8b07cd5f3e7e3c74...417478a29219ca2824a3ea845e4d1708c9a9a412
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