[med-svn] [Git][med-team/vsearch][upstream] New upstream version 2.30.4

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / vsearch


Commits:
bffd9ffa by Étienne Mollier at 2026-02-16T22:00:42+01:00
New upstream version 2.30.4
- - - - -


113 changed files:

- + .github/workflows/build-all.yml
- + .github/workflows/build-and-test.yml
- LICENSE.txt
- README.md
- configure.ac
- man/vsearch.1
- src/align_simd.cc
- src/align_simd.h
- src/allpairs.cc
- src/allpairs.h
- src/arch.cc
- src/arch.h
- src/attributes.cc
- src/attributes.h
- src/bitmap.cc
- src/bitmap.h
- src/chimera.cc
- src/chimera.h
- src/cluster.cc
- src/cluster.h
- src/cpu.cc
- src/cpu.h
- src/cut.cc
- src/cut.h
- src/db.cc
- src/db.h
- src/dbhash.cc
- src/dbhash.h
- src/dbindex.cc
- src/dbindex.h
- src/derep.cc
- src/derep.h
- src/derep_prefix.cc
- src/derep_prefix.h
- src/derep_smallmem.cc
- src/derep_smallmem.h
- src/dynlibs.cc
- src/dynlibs.h
- src/eestats.cc
- src/eestats.h
- src/fasta.cc
- src/fasta.h
- src/fasta2fastq.cc
- src/fasta2fastq.h
- src/fastq.cc
- src/fastq.h
- src/fastq_chars.cc
- src/fastq_chars.h
- src/fastq_join.cc
- src/fastq_join.h
- src/fastq_mergepairs.cc
- src/fastq_mergepairs.h
- src/fastq_stats.cc
- src/fastq_stats.h
- src/fastqops.cc
- src/fastqops.h
- src/fastx.cc
- src/fastx.h
- src/filter.cc
- src/filter.h
- src/getseq.cc
- src/getseq.h
- src/kmerhash.cc
- src/kmerhash.h
- src/linmemalign.cc
- src/linmemalign.h
- src/mask.cc
- src/mask.h
- src/minheap.cc
- src/minheap.h
- src/msa.cc
- src/msa.h
- src/orient.cc
- src/orient.h
- src/otutable.cc
- src/otutable.h
- src/rereplicate.cc
- src/rereplicate.h
- src/results.cc
- src/results.h
- src/search.cc
- src/search.h
- src/search_exact.cc
- src/search_exact.h
- src/searchcore.cc
- src/searchcore.h
- src/sff_convert.cc
- src/sff_convert.h
- src/showalign.cc
- src/showalign.h
- src/shuffle.cc
- src/shuffle.h
- src/sintax.cc
- src/sintax.h
- src/sortbylength.cc
- src/sortbylength.h
- src/sortbysize.cc
- src/sortbysize.h
- src/subsample.cc
- src/subsample.h
- src/tax.cc
- src/tax.h
- src/udb.cc
- src/udb.h
- src/unique.cc
- src/unique.h
- src/userfields.cc
- src/userfields.h
- src/util.cc
- src/util.h
- src/vsearch.cc
- src/vsearch.h
- src/xstring.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/vsearch/-/commit/bffd9ffaea63f98c6c50797767e70a1db6db7524

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