[med-svn] [Git][med-team/bwa-mem2][master] 12 commits: d/watch: upgrade to uscan 5 syntax

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / bwa-mem2


Commits:
c2d57ddf by Michael R. Crusoe at 2026-02-21T10:15:48+01:00
d/watch: upgrade to uscan 5 syntax

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301d7c25 by Michael R. Crusoe at 2026-02-21T10:16:36+01:00
New upstream version

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55c96453 by Michael R. Crusoe at 2026-02-21T10:16:36+01:00
New upstream version 2.3
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9b541949 by Michael R. Crusoe at 2026-02-21T10:16:38+01:00
Update upstream source from tag 'upstream/2.3'

Update to upstream version '2.3'
with Debian dir 373c4c2b2c508f661f4703751afc9bc802394981
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2f2f5eca by Michael R. Crusoe at 2026-02-21T10:16:38+01:00
Standards-Version: 4.7.3 (routine-update)

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1c373b4d by Michael R. Crusoe at 2026-02-21T10:16:49+01:00
debputy lint --auto-fix (routine-update)

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5fd0f5a2 by Michael R. Crusoe at 2026-02-21T10:37:03+01:00
Removed many patches that were applied upstream.

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851a1b27 by Michael R. Crusoe at 2026-02-21T10:56:01+01:00
Add +ds suffix, as we removed the ".git" directory from the upstream tarball.

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1496a738 by Michael R. Crusoe at 2026-02-21T10:56:09+01:00
New upstream version 2.3+ds
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9c11e917 by Michael R. Crusoe at 2026-02-21T10:56:10+01:00
Update upstream source from tag 'upstream/2.3+ds'

Update to upstream version '2.3+ds'
with Debian dir 6f61ef157a3bbb5a06d668e344a2c5688f259652
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22adbd05 by Michael R. Crusoe at 2026-02-21T11:44:34+01:00
d/clean: enable repeat builds

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dd8a0c95 by Michael R. Crusoe at 2026-02-21T11:44:34+01:00
copyright updates

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23 changed files:

- README.md
- debian/changelog
- + debian/clean
- debian/control
- debian/copyright
- − debian/patches/0001-Fix-typo.patch
- − debian/patches/0002-fixed-return-status-due-incorrect-input-files.patch
- − debian/patches/0003-fixed-smem-memory-rellocation-issue-issue167.patch
- − debian/patches/0004-Update-to-reflect-2.2.1-release-and-small-typo.patch
- − debian/patches/0005-GCC-11-now-defines-__rdtsc-so-definition-test-condit.patch
- − debian/patches/0006-fixed-segfault-due-to-memory-shortage-in-smem.patch
- − debian/patches/0007-Merge-pull-request-229-from-gh-jphan-fix_n_processed.patch
- debian/patches/hardening
- debian/patches/series
- debian/patches/simde
- debian/watch
- src/bwamem.cpp
- src/bwamem.h
- src/fastmap.cpp
- src/kthread.cpp
- src/macro.h
- src/main.cpp
- src/utils.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bwa-mem2/-/compare/7151fe2fea4918da6ae48327ba3895f65b684857...dd8a0c95ed0f9e379077d3ae7ac44dad6e80e1b1

-- 
View it on GitLab: https://salsa.debian.org/med-team/bwa-mem2/-/compare/7151fe2fea4918da6ae48327ba3895f65b684857...dd8a0c95ed0f9e379077d3ae7ac44dad6e80e1b1
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