[med-svn] [Git][med-team/minimac4][master] 8 commits: Building with CMake 4.2 using CMAKE_POLICY_VERSION_MINIMUM

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / minimac4


Commits:
978f838c by Pierre Gruet at 2026-02-21T18:49:38+01:00
Building with CMake 4.2 using CMAKE_POLICY_VERSION_MINIMUM

- - - - -
dd0e8025 by Pierre Gruet at 2026-02-21T18:50:10+01:00
Removing Priority: optional, which is default

- - - - -
2d33ba38 by Pierre Gruet at 2026-02-21T18:50:14+01:00
Removing R-R-R: no, which is now default

- - - - -
f91bece6 by Pierre Gruet at 2026-02-21T18:50:27+01:00
Raising Standards version to 4.7.3

- - - - -
6bec042a by Pierre Gruet at 2026-02-21T18:51:05+01:00
Rewriting d/watch with version 5

- - - - -
c261b340 by Pierre Gruet at 2026-02-21T18:53:05+01:00
Updating changelog

- - - - -
46f90503 by Pierre Gruet at 2026-02-21T18:54:56+01:00
Fixing syntax in lzma patch header

- - - - -
617b423b by Pierre Gruet at 2026-02-21T18:55:09+01:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/patches/lzma.patch
- debian/rules
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+minimac4 (4.1.6-2) unstable; urgency=medium
+
+  * Team upload
+  * Building with CMake 4.2 using CMAKE_POLICY_VERSION_MINIMUM (Closes: #1125552)
+  * Raising Standards version to 4.7.3:
+    - Removing Priority: optional, which is default
+    - Removing R-R-R: no, which is now default
+  * Rewriting d/watch with version 5
+  * Fixing syntax in lzma patch header
+
+ -- Pierre Gruet <pgt at debian.org>  Sat, 21 Feb 2026 18:54:59 +0100
+
 minimac4 (4.1.6-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -3,7 +3,6 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Dylan Aïssi <daissi at debian.org>,
            Étienne Mollier <emollier at debian.org>
 Section: science
-Priority: optional
 Build-Depends: debhelper-compat (= 13),
                cmake,
                zlib1g-dev,
@@ -14,11 +13,10 @@ Build-Depends: debhelper-compat (= 13),
                liblzma-dev,
                libzstd-dev,
                bcftools <!nocheck>
-Standards-Version: 4.6.2
+Standards-Version: 4.7.3
 Vcs-Browser: https://salsa.debian.org/med-team/minimac4
 Vcs-Git: https://salsa.debian.org/med-team/minimac4.git
 Homepage: https://genome.sph.umich.edu/wiki/Minimac4
-Rules-Requires-Root: no
 
 Package: minimac4
 Architecture: any


=====================================
debian/patches/lzma.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 22 Sep 2022 09:28:59 +0200
+Last-Update: 2022-05-17
 Description: Make sure lzma can be linked
 Forwarded: not-needed
 


=====================================
debian/rules
=====================================
@@ -8,4 +8,4 @@ export DEB_CPPFLAGS_MAINT_APPEND = -I/usr/include/libStatGen
 	dh $@
 
 override_dh_auto_configure:
-	dh_auto_configure -- -DBUILD_TESTS=ON
+	dh_auto_configure -- -DBUILD_TESTS=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5


=====================================
debian/watch
=====================================
@@ -1,3 +1,5 @@
-version=4
-opts=filenamemangle=s/.+\/v?(\d\S+)\.tar\.gz/Minimac4-$1\.tar\.gz/ \
-  https://github.com/statgen/Minimac4/tags .*/v?(\d\S+)\.tar\.gz
+Version: 5
+
+Source: https://github.com/statgen/Minimac4/tags
+Matching-Pattern: .*/v?(\d\S+)\.tar\.gz
+Filenamemangle: s/.+\/v?(\d\S+)\.tar\.gz/Minimac4-$1\.tar\.gz/



View it on GitLab: https://salsa.debian.org/med-team/minimac4/-/compare/2e9b341a0866c5467e1a6f009e1791fa915da396...617b423b8906a2a60ffcb21e7e938915f9ef362e

-- 
View it on GitLab: https://salsa.debian.org/med-team/minimac4/-/compare/2e9b341a0866c5467e1a6f009e1791fa915da396...617b423b8906a2a60ffcb21e7e938915f9ef362e
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