[med-svn] [Git][med-team/ghmm][master] 9 commits: d/control: hardcode conflicting libghmm1 version.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Thu Feb 26 21:40:02 GMT 2026
Étienne Mollier pushed to branch master at Debian Med / ghmm
Commits:
83d392e0 by Étienne Mollier at 2026-02-26T22:22:12+01:00
d/control: hardcode conflicting libghmm1 version.
- - - - -
82c14d7f by Étienne Mollier at 2026-02-26T22:24:28+01:00
d/patches/*: normalise dep3 headers where needed.
- - - - -
6ad6e1c9 by Étienne Mollier at 2026-02-26T22:26:36+01:00
d/watch: convert to watch file version 5.
- - - - -
120617c1 by Étienne Mollier at 2026-02-26T22:26:55+01:00
d/control: drop redundant Priority: optional.
- - - - -
24128d31 by Étienne Mollier at 2026-02-26T22:27:12+01:00
d/control: drop Redundant Rules-Requires-Root: no.
- - - - -
88a861c8 by Étienne Mollier at 2026-02-26T22:27:36+01:00
d/control: declare compliance to standards version 4.7.3.
- - - - -
02c44566 by Étienne Mollier at 2026-02-26T22:35:02+01:00
d/clean: new: remove .pybuild.
Closes: #1044649
- - - - -
abadd5d9 by Étienne Mollier at 2026-02-26T22:38:41+01:00
d/s/lintian-overrides: remove: unused override.
- - - - -
2305da0c by Étienne Mollier at 2026-02-26T22:39:33+01:00
d/changelog: ready for upload to unstable.
- - - - -
13 changed files:
- debian/changelog
- + debian/clean
- debian/control
- debian/patches/2to3.patch
- debian/patches/buildError.patch
- debian/patches/fix_libxml2_config.patch
- debian/patches/gcc-14.patch
- debian/patches/python3_build_system.patch
- debian/patches/python3_syntax.patch
- debian/patches/pythonpaths.patch
- debian/patches/setuptools.patch
- − debian/source/lintian-overrides
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+ghmm (0.9~rc3-12) unstable; urgency=medium
+
+ * d/control: hardcode conflicting libghmm1 version.
+ * d/patches/*: normalise dep3 headers where needed.
+ * d/watch: convert to watch file version 5.
+ * d/control: drop redundant Priority: optional.
+ * d/control: drop Redundant Rules-Requires-Root: no.
+ * d/control: declare compliance to standards version 4.7.3.
+ * d/clean: new: remove .pybuild. (Closes: #1044649)
+ * d/s/lintian-overrides: remove: unused override.
+
+ -- Étienne Mollier <emollier at debian.org> Thu, 26 Feb 2026 22:39:04 +0100
+
ghmm (0.9~rc3-11.1) unstable; urgency=medium
* Non-maintainer upload.
=====================================
debian/clean
=====================================
@@ -0,0 +1 @@
+.pybuild/
=====================================
debian/control
=====================================
@@ -3,7 +3,6 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Steffen Moeller <moeller at debian.org>,
Étienne Mollier <emollier at debian.org>
Section: science
-Priority: optional
Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
dh-sequence-python3,
d-shlibs (>= 0.106~),
@@ -15,11 +14,10 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
liblapacke-dev,
zlib1g-dev,
swig
-Standards-Version: 4.7.0
+Standards-Version: 4.7.3
Vcs-Browser: https://salsa.debian.org/med-team/ghmm
Vcs-Git: https://salsa.debian.org/med-team/ghmm.git
Homepage: https://sourceforge.net/p/ghmm/wiki/Home/
-Rules-Requires-Root: no
Package: ghmm
Architecture: any
@@ -55,7 +53,7 @@ Description: General Hidden-Markov-Model library - header files
Package: libghmm1t64
Provides: ${t64:Provides}
Replaces: libghmm1
-Conflicts: libghmm1 (<< ${source:Version})
+Conflicts: libghmm1 (<< 0.9~rc3-9)
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
=====================================
debian/patches/2to3.patch
=====================================
@@ -1,7 +1,7 @@
Description: Use 2to3 to port to Python3
Bug-Debian: https://bugs.debian.org/936609
Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 11 Sep 2019 14:25:34 +0200
+Last-Update: 2019-09-11
--- a/HMMEd/EditingContext.py
+++ b/HMMEd/EditingContext.py
=====================================
debian/patches/buildError.patch
=====================================
@@ -1,6 +1,6 @@
Author: Steffen Möller
-Last-Update: 2018-05-23 20:24:29 +0200
-Desctiption: Fix format security issue
+Last-Update: 2018-05-23
+Description: Fix format security issue
--- ghmm.orig/ghmm/xmlwriter.c
+++ ghmm/ghmm/xmlwriter.c
=====================================
debian/patches/fix_libxml2_config.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 06 Dec 2018 09:36:55 +0100
+Last-Update: 2018-12-06
Description: Skip non-working check for libxml2 version which is
granted by Build-Depends anyway
=====================================
debian/patches/gcc-14.patch
=====================================
@@ -14,7 +14,7 @@ Description: fix pointer indirection level in tests/mcmc.c.
This looks to be caused by a missing '*' in Q declaration.
Author: Étienne Mollier <emollier at debian.org>
-Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074994
+Bug-Debian: https://bugs.debian.org/1074994
Forwarded: no
Last-Update: 2024-07-16
---
=====================================
debian/patches/python3_build_system.patch
=====================================
@@ -1,7 +1,7 @@
Description: Make sure Python3 is used
Bug-Debian: https://bugs.debian.org/936609
Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 11 Sep 2019 14:25:34 +0200
+Last-Update: 2019-09-11
--- a/configure.in
+++ b/configure.in
=====================================
debian/patches/python3_syntax.patch
=====================================
@@ -1,6 +1,6 @@
Description: Fix: SyntaxWarning: "is" with a literal. Did you mean "=="?
Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 11 Jan 2024 17:06:32 +0100
+Last-Update: 2024-01-11
--- a/HMMEd/HMMEditingContext.py
+++ b/HMMEd/HMMEditingContext.py
=====================================
debian/patches/pythonpaths.patch
=====================================
@@ -1,6 +1,6 @@
Author: Steffen Möller
-Last-Update: 2018-05-23 20:24:29 +0200
-Desctiption: Fix path prefix
+Last-Update: 2018-05-23
+Description: Fix path prefix
Index: ghmm-0.9~rc3/HMMEd/Makefile.am
===================================================================
=====================================
debian/patches/setuptools.patch
=====================================
@@ -3,7 +3,7 @@ Description: Attempt to fix the installation for local builds (for instance with
installs to /usr/local (despite prefix is properly set) and thus breaks the build for both
--> patch deactivated
Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 11 Jan 2024 17:06:32 +0100
+Last-Update: 2024-01-11
--- a/HMMEd/setup.py
+++ b/HMMEd/setup.py
=====================================
debian/source/lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-# libghmm1 is the package name prior 64-bit time_t transition.
-ghmm source: version-substvar-for-external-package Conflicts ${source:Version} libghmm1t64 -> libghmm1 [debian/control:*]
=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
-opts=uversionmangle=s/-rc/~rc/ \
-https://sf.net/ghmm/ ghmm-(.*)\.tar\.gz
+Source: https://sf.net/ghmm/
+Matching-Pattern: ghmm- at ANY_VERSION@@ARCHIVE_EXT@
+UVersion-Mangle: auto
View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/d33a2d8a735e1c9ac5c51b123453f75e823dd0f8...2305da0cedaeefcf769dd39d03ddb16203d678b3
--
View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/d33a2d8a735e1c9ac5c51b123453f75e823dd0f8...2305da0cedaeefcf769dd39d03ddb16203d678b3
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260226/ea030021/attachment-0001.htm>
More information about the debian-med-commit
mailing list