[med-svn] [Git][med-team/clonalorigin][master] 7 commits: d/control: fix typo in Recemmends field.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / clonalorigin


Commits:
6308e01a by Étienne Mollier at 2026-01-03T19:10:27+01:00
d/control: fix typo in Recemmends field.

Thanks: Carles Pina i Estany
Closes: #1112565

- - - - -
d8f8c016 by Étienne Mollier at 2026-01-03T19:11:26+01:00
d/control: drop redundant Priority: optional.

- - - - -
05edc031 by Étienne Mollier at 2026-01-03T19:11:50+01:00
d/control: drop redundant Rules-Requires-Root: no.

- - - - -
72e9b7c7 by Étienne Mollier at 2026-01-03T19:12:08+01:00
d/control: declare compliance to standards version 4.7.3.

- - - - -
22a5044d by Étienne Mollier at 2026-01-03T19:12:52+01:00
d/watch: convert to v5 Github template.

- - - - -
4cf230ae by Étienne Mollier at 2026-01-03T19:20:54+01:00
d/patches/*: normalize Last-Update timestamps.

- - - - -
028c4a23 by Étienne Mollier at 2026-01-03T19:22:13+01:00
d/changelog: ready for upload to unstable.

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/patches/gcc-11.patch
- debian/patches/portability.patch
- debian/patches/qt5.patch
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+clonalorigin (1.0-9) unstable; urgency=medium
+
+  * d/control: fix typo in Recemmends field.
+    Thanks to Carles Pina i Estany (Closes: #1112565)
+  * d/control: drop redundant Priority: optional.
+  * d/control: drop redundant Rules-Requires-Root: no.
+  * d/control: declare compliance to standards version 4.7.3.
+  * d/watch: convert to v5 Github template.
+  * d/patches/*: normalize Last-Update timestamps.
+
+ -- Étienne Mollier <emollier at debian.org>  Sat, 03 Jan 2026 19:21:57 +0100
+
 clonalorigin (1.0-8) unstable; urgency=medium
 
   * shorten-test.patch: new: reduce stress on buildds. (Closes: #884475)


=====================================
debian/control
=====================================
@@ -3,24 +3,22 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>,
            Étienne Mollier <emollier at debian.org>
 Section: science
-Priority: optional
 Build-Depends: debhelper-compat (= 13),
                libgsl-dev,
 #               qt5-qmake-bin,
 #               qttools5-dev,
 #               libqt5svg5-dev,
                rename
-Standards-Version: 4.6.2
+Standards-Version: 4.7.3
 Vcs-Browser: https://salsa.debian.org/med-team/clonalorigin
 Vcs-Git: https://salsa.debian.org/med-team/clonalorigin.git
 Homepage: https://github.com/xavierdidelot/clonalorigin
-Rules-Requires-Root: no
 
 Package: clonalorigin
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends}
-Recommends: libxml-parserl-perl
+Recommends: libxml-parser-perl
 Description: inference of homologous recombination in bacteria using whole genome sequences
  Bacteria, unlike us, can reproduce on their own. They do however have
  mechanisms that transfer DNA between organisms, a process more formally


=====================================
debian/patches/gcc-11.patch
=====================================
@@ -1,7 +1,7 @@
 Description: Fix build issue with gcc-11
 Bug-Debian: https://bugs.debian.org/984018
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Thu, 21 Oct 2021 18:21:44 +0200
+Last-Update: 2021-10-21
 Forwarded: https://github.com/xavierdidelot/ClonalOrigin/issues/9
 
 --- a/warg/src/rng.cpp


=====================================
debian/patches/portability.patch
=====================================
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Sat, 02 Dec 2017 17:06:16 +0100
+Last-Update: 2017-12-02
 Description: Drop -msse for portability reasons
 Forwarded: not-needed
 


=====================================
debian/patches/qt5.patch
=====================================
@@ -2,7 +2,7 @@ Comment: This patch is deactivated but do NOT delete it.
          It enables compilation of the package but needs more work which is explained in
             https://lists.debian.org/debian-mentors/2017/12/msg00025.html
 Author: Andreas Tille <tille at debian.org>
-Last-Update: Sat, 02 Dec 2017 17:06:16 +0100
+Last-Update: 2017-12-02
 Description: Migration from Qt4 to Qt5
 
 --- a/gui/mainwindowimpl.cpp


=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
 
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
-  https://github.com/xavierdidelot/clonalorigin/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Template: Github
+Owner: xavierdidelot
+Project: clonalorigin



View it on GitLab: https://salsa.debian.org/med-team/clonalorigin/-/compare/e853a2b88171ea41feb19016e6f81e820bb9ddfb...028c4a238fe38fb2f9b0929b42a34d9e65584290

-- 
View it on GitLab: https://salsa.debian.org/med-team/clonalorigin/-/compare/e853a2b88171ea41feb19016e6f81e820bb9ddfb...028c4a238fe38fb2f9b0929b42a34d9e65584290
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