[med-svn] [Git][med-team/pybigwig][upstream] New upstream version 0.3.25+dfsg

[Diane Trout (@diane)]

Diane Trout pushed to branch upstream at Debian Med / pybigwig


Commits:
94f5cdf5 by Diane Trout at 2026-01-14T20:31:43-08:00
New upstream version 0.3.25+dfsg
- - - - -


4 changed files:

- .github/workflows/build.yml
- pyBigWig.c
- pyBigWig.h
- pyproject.toml


Changes:

=====================================
.github/workflows/build.yml
=====================================
@@ -45,7 +45,7 @@ jobs:
     - name: Build sdist
       run: |
         python -m build --sdist
-    - uses: actions/upload-artifact at v3
+    - uses: actions/upload-artifact at v6
       with:
         name: pyBigWig-build
         path: |


=====================================
pyBigWig.c
=====================================
@@ -612,7 +612,8 @@ static PyObject *pyBwGetValues(pyBigWigFile_t *self, PyObject *args) {
     if(!hasEntries(self->bw)) {
 #ifdef WITHNUMPY
         if(outputNumpy == Py_True) {
-            return PyArray_SimpleNew(0, NULL, NPY_FLOAT);
+            const npy_intp arr[1] = {0};
+            return PyArray_SimpleNew(1, arr, NPY_FLOAT);
         } else {
 #endif
             return PyList_New(0);
@@ -894,7 +895,7 @@ PyObject *pyBwAddHeader(pyBigWigFile_t *self, PyObject *args, PyObject *kwds) {
     }
 
     //Create the chromosome list
-    bw->cl = bwCreateChromList(chroms, lengths, n);
+    bw->cl = bwCreateChromList((const char* const*) chroms, lengths, n);
     if(!bw->cl) {
         PyErr_SetString(PyExc_RuntimeError, "Received an error in bwCreateChromList");
         goto error;
@@ -1248,7 +1249,7 @@ int PyAddIntervals(pyBigWigFile_t *self, PyObject *chroms, PyObject *starts, PyO
         if(PyErr_Occurred()) goto error;
     }
 
-    rv = bwAddIntervals(bw, cchroms, ustarts, uends, fvalues, n);
+    rv = bwAddIntervals(bw, (const char * const*) cchroms, ustarts, uends, fvalues, n);
     if(!rv) {
         self->lastTid = bwGetTid(bw, cchroms[n-1]);
         self->lastStart = uends[n-1];


=====================================
pyBigWig.h
=====================================
@@ -2,7 +2,7 @@
 #include <structmember.h>
 #include "bigWig.h"
 
-#define pyBigWigVersion "0.3.23"
+#define pyBigWigVersion "0.3.25"
 
 typedef struct {
     PyObject_HEAD


=====================================
pyproject.toml
=====================================
@@ -20,7 +20,7 @@ classifiers = [
 description = "A package for accessing bigWig files using libBigWig"
 keywords = ["bioinformatics", "bigWig", "bigBed"]
 name = "pyBigWig"
-version = "0.3.23"
+version = "0.3.25"
 readme = "README.md"
 requires-python = ">=3.9"
 



View it on GitLab: https://salsa.debian.org/med-team/pybigwig/-/commit/94f5cdf582e33b27b04ba5a7b6434521ae2d4b33

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View it on GitLab: https://salsa.debian.org/med-team/pybigwig/-/commit/94f5cdf582e33b27b04ba5a7b6434521ae2d4b33
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