[med-svn] [Git][med-team/mcaller][master] 5 commits: Changes made by cme

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / mcaller


Commits:
c16c55f7 by Andreas Tille at 2026-07-01T06:24:49+02:00
Changes made by cme

- - - - -
f570467c by Andreas Tille at 2026-07-01T06:24:53+02:00
Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)

- - - - -
afe1445d by Andreas Tille at 2026-07-01T06:24:53+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)

- - - - -
9ddf5988 by Andreas Tille at 2026-07-01T06:28:24+02:00
routine-update: Ready to upload to unstable

- - - - -
0fea4772 by Andreas Tille at 2026-07-01T07:04:40+02:00
DEP3

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/patches/python2to3.patch
- debian/patches/shebang.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-mcaller (1.0.3+git20210624.b415090-4) UNRELEASED; urgency=medium
+mcaller (1.0.3+git20210624.b415090-4) unstable; urgency=medium
 
   * Team upload.
   * d/watch: version=5
@@ -6,8 +6,11 @@ mcaller (1.0.3+git20210624.b415090-4) UNRELEASED; urgency=medium
   * Update standards version to 4.7.4, no changes needed.
   * Fix multiprocessing with Python3.14
     Closes: #1140947
+  * Reflow Uploaders field (cme)
+  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
+  * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
 
- -- Andreas Tille <tille at debian.org>  Tue, 30 Jun 2026 21:52:47 +0200
+ -- Andreas Tille <tille at debian.org>  Wed, 01 Jul 2026 06:24:58 +0200
 
 mcaller (1.0.3+git20210624.b415090-3) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -1,41 +1,43 @@
 Source: mcaller
-Section: science
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper-compat (= 13),
-               dh-python,
-               python3-all,
-               python3-setuptools,
-               python3-seaborn,
-               python3-biopython,
-               python3-numpy,
-               python3-sklearn
 Standards-Version: 4.7.4
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders:
+ Steffen Moeller <moeller at debian.org>,
+Section: science
+Testsuite: autopkgtest-pkg-python
+Build-Depends:
+ debhelper-compat (= 14),
+ dh-sequence-python3,
+ python3-all,
+ python3-setuptools,
+ python3-seaborn,
+ python3-biopython,
+ python3-numpy,
+ python3-sklearn,
 Vcs-Browser: https://salsa.debian.org/med-team/mcaller
 Vcs-Git: https://salsa.debian.org/med-team/mcaller.git
 Homepage: https://github.com/al-mcintyre/mCaller
-Testsuite: autopkgtest-pkg-python
-Rules-Requires-Root: no
 
 Package: mcaller
 Architecture: all
-Depends: python3,
-         ${python3:Depends},
-         ${misc:Depends},
-         python3-sklearn,
-         python3-h5py,
-         python3-biopython,
-         python3-matplotlib,
-         python3-seaborn,
-         python3-numpy,
-         python3-pysam,
-         python3-scipy,
-         python3-pandas
+Depends:
+ python3,
+ ${python3:Depends},
+ ${misc:Depends},
+ python3-sklearn,
+ python3-h5py,
+ python3-biopython,
+ python3-matplotlib,
+ python3-seaborn,
+ python3-numpy,
+ python3-pysam,
+ python3-scipy,
+ python3-pandas,
 Recommends:
-         nanopolish|poretools
+ nanopolish|poretools,
 Suggests:
-         graphmap,
-         bwa
+ graphmap,
+ bwa,
 Description: find methylation in nanopore reads
     H
     |


=====================================
debian/patches/python2to3.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Steffen Möller
+Last-Update: 2020-09-04
+Description: Result from 2to3
+
 Index: mcaller/make_bed.py
 ===================================================================
 --- mcaller.orig/make_bed.py


=====================================
debian/patches/shebang.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Steffen Möller
+Last-Update: 2020-09-04
+Description: Make sure the shebang line calls python3
+
 Index: mcaller-0.0/compare_genomes.py
 ===================================================================
 --- mcaller-0.0.orig/compare_genomes.py


=====================================
debian/rules
=====================================
@@ -7,7 +7,7 @@ UVERSION=`head -n1 debian/changelog |cut -f1 -d- | cut -f2 -d'(' `
 include /usr/share/dpkg/default.mk
 
 %:
-	dh $@ --with python3
+	dh $@
 
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))



View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/compare/cdd58c2c6247e6bcf35ce700c0cb4d862d0a22bb...0fea47722870d8c774ba9e7c8aab83871b6d010f

-- 
View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/compare/cdd58c2c6247e6bcf35ce700c0cb4d862d0a22bb...0fea47722870d8c774ba9e7c8aab83871b6d010f
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