[med-svn] [Git][med-team/unifrac-tools][master] 2 commits: Merge changelog paragraphs

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / unifrac-tools


Commits:
a8700f8f by Andreas Tille at 2026-07-01T07:08:04+02:00
Merge changelog paragraphs

- - - - -
6295f42c by Andreas Tille at 2026-07-01T09:12:37+02:00
Do not explicitly specify -noshlib

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/enable_linking_to_shared_hdf5_lib.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -7,15 +7,13 @@ unifrac-tools (1.6.1-1) UNRELEASED; urgency=medium
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
-  TODO: https://github.com/scikit-bio/scikit-bio-binaries
+  * Build-Depends: libskbb-dev
+  * Reformat the Last-Update date as ISO YYYY-MM-DD.
 
   [ Gilles Filippini ]
   * Fix FTBFS against HDF5 2.1.0
     Closes: #1139615
 
-  [ Andreas Tille ]
-  * Reformat the Last-Update date as ISO YYYY-MM-DD.
-
  -- Andreas Tille <tille at debian.org>  Tue, 16 Jun 2026 22:24:42 +0200
 
 unifrac-tools (1.4-3) unstable; urgency=medium


=====================================
debian/control
=====================================
@@ -14,6 +14,7 @@ Build-Depends:
  liblz4-dev,
  libblas-dev,
  liblapacke-dev,
+ libskbb-dev,
  chrpath,
  gfortran,
  python3 <!nocheck>,


=====================================
debian/patches/enable_linking_to_shared_hdf5_lib.patch
=====================================
@@ -2,7 +2,7 @@ From: ucko at debian.org (Aaron M. Ucko)
       Andreas Tille <tille at debian.org>
 Date: 2026-06-17
 Origin: https://lists.debian.org/debian-med/2022/07/msg00078.html
-Description: Enable linking ro shared hdf5 library
+Description: Enable linking to shared hdf5 library
 Forwarded: not-needed
 FIXME: Aaron, please review the changes
 
@@ -21,7 +21,7 @@ FIXME: Aaron, please review the changes
  lib$(SSU).so: tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o unifrac.o cmd.o skbio_alt.o api.o $(UNIFRAC_FILES)
  #	h5c++ $(LDDFLAGS) -o lib$(SSU).so tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5
 -	h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -shlib -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5
-+	h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5
++	h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5
  	ln -sf lib$(SSU).so.0 lib$(SSU).so
  	# FIXME: Should build static lib as well
  	# $(CXX) $(LDDFLAGS) -o libssu.a tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 $(BLASLIB) -L$(PREFIX)/lib



View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/65ac418aae895faafe1ec1a7d25af50caa58caf4...6295f42c390df38d1598576dc91ef4c4b12c5c5b

-- 
View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/65ac418aae895faafe1ec1a7d25af50caa58caf4...6295f42c390df38d1598576dc91ef4c4b12c5c5b
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