[med-svn] [Git][med-team/python-cobra][upstream] New upstream version 0.31.1

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / python-cobra


Commits:
3bd1dd72 by Andreas Tille at 2026-06-02T16:53:09+02:00
New upstream version 0.31.1
- - - - -


49 changed files:

- .editorconfig
- .github/CONTRIBUTING.rst
- .github/workflows/cron.yml
- .github/workflows/main.yml
- .github/workflows/release.yml
- + .github/workflows/safety.yml
- .github/workflows/test.yml
- + .pre-commit-config.yaml
- .readthedocs.yaml
- README.rst
- documentation_builder/conf.py
- documentation_builder/requirements.txt
- + release-notes/0.30.0.md
- + release-notes/0.31.0.md
- + release-notes/0.31.1.md
- release-notes/next-release.md
- setup.cfg
- setup.py
- src/cobra/__init__.py
- src/cobra/core/dictlist.py
- src/cobra/core/gene.py
- src/cobra/core/model.py
- src/cobra/core/reaction.py
- src/cobra/flux_analysis/__init__.py
- + src/cobra/flux_analysis/fast_snp.py
- src/cobra/flux_analysis/fastcc.py
- + src/cobra/flux_analysis/find_cyclic_reactions.py
- src/cobra/flux_analysis/loopless.py
- src/cobra/flux_analysis/variability.py
- src/cobra/io/dict.py
- src/cobra/io/web/biomodels_repository.py
- src/cobra/io/web/cobrapy_repository.py
- src/cobra/io/web/load.py
- src/cobra/sampling/hr_sampler.py
- src/cobra/util/__init__.py
- tests/conftest.py
- tests/data/update_pickles.py
- tests/test_core/test_core_reaction.py
- tests/test_core/test_gpr.py
- tests/test_core/test_solution.py
- + tests/test_flux_analysis/test_fast_snp.py
- tests/test_flux_analysis/test_fastcc.py
- + tests/test_flux_analysis/test_find_cyclic_reactions.py
- tests/test_flux_analysis/test_loopless.py
- tests/test_flux_analysis/test_variability.py
- tests/test_io/test_json.py
- tests/test_io/test_web/test_load.py
- tests/test_util/test_solver.py
- tox.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/commit/3bd1dd72d8fe07f4baf91e94cbd760678874391b

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/commit/3bd1dd72d8fe07f4baf91e94cbd760678874391b
You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260602/7fd14138/attachment.htm>