[med-svn] [Git][med-team/python-cogent][master] 4 commits: d/control: Drop <!nocheck> from python3-loky.

[Santiago Vila (@sanvila)]

Santiago Vila pushed to branch master at Debian Med / python-cogent


Commits:
83914f2f by Santiago Vila at 2026-06-24T21:05:00+02:00
d/control: Drop <!nocheck> from python3-loky.

Fixes FTBFS with nocheck build profile:

Running Sphinx v9.1.0
loading translations [en]... done
making output directory... done
WARNING: html_static_path entry '_static' does not exist
WARNING: The config value `today' has type `date'; expected `str'.
checking bibtex cache... out of date
parsing bibtex file /<<PKGBUILDDIR>>/doc/cogent3.bib... parsed 21 entries
Writing evaluated template result to /<<PKGBUILDDIR>>/doc/_build/html/_static/nbsphinx-code-cells.css
[autosummary] generating autosummary for: COGENT3_LICENSE.rst, api/__init__/cogent3.__init__.available_apps.rst, api/__init__/cogent3.__init__.available_codes.rst, api/__init__/cogent3.__init__.available_models.rst, api/__init__/cogent3.__init__.available_moltypes.rst, api/__init__/cogent3.__init__.get_code.rst, api/__init__/cogent3.__init__.get_model.rst, api/__init__/cogent3.__init__.get_moltype.rst, api/__init__/cogent3.__init__.load_aligned_seqs.rst, api/__init__/cogent3.__init__.load_annotations.rst, ..., examples/rate_heterogeneity.rst, examples/relative_rate.rst, examples/scope_model_params_on_trees.rst, examples/simple.rst, examples/simulate_alignment.rst, examples/testing_multi_loci.rst, index.rst, install.rst, licenses.rst, pycogent.rst
  + Exception Group Traceback (most recent call last):
  |   File "/usr/lib/python3/dist-packages/sphinx/ext/autosummary/generate.py", line 664, in generate_autosummary_docs
  |     name, obj, parent, modname = import_by_name(entry.name)
  |                                  ~~~~~~~~~~~~~~^^^^^^^^^^^^
  |   File "/usr/lib/python3/dist-packages/sphinx/ext/autosummary/__init__.py", line 682, in import_by_name
  |     raise ImportExceptionGroup(msg, exceptions)
  | sphinx.ext.autosummary.ImportExceptionGroup: could not import cogent3.core.alignment.Aligned (6 sub-exceptions)
  +-+---------------- 1 ----------------
    | Traceback (most recent call last):
    |   File "/usr/lib/python3/dist-packages/sphinx/ext/autosummary/__init__.py", line 696, in _import_by_name
    |     mod = _import_module(modname)
    |   File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 215, in _import_module
    |     spec = find_spec(modname)
    |   File "<frozen importlib.util>", line 91, in find_spec
    |   File "/<<PKGBUILDDIR>>/src/cogent3/__init__.py", line 31, in <module>
    |     set_parallel_backend("loky")
    |     ~~~~~~~~~~~~~~~~~~~~^^^^^^^^
    |   File "/usr/lib/python3/dist-packages/scinexus/parallel.py", line 382, in set_parallel_backend
    |     _default_backend = _make_backend(backend)
    |   File "/usr/lib/python3/dist-packages/scinexus/parallel.py", line 358, in _make_backend
    |     raise ImportError(msg) from None
    | ImportError: loky is not installed, use pip install "scinexus[loky]"

- - - - -
a262d7b4 by Santiago Vila at 2026-06-24T21:10:00+02:00
d/control: Drop "Rules-Requires-Root: no" (default).

- - - - -
19a544f6 by Santiago Vila at 2026-06-24T21:15:00+02:00
d/control: Drop "Priority: optional" (default).

- - - - -
650ffb32 by Santiago Vila at 2026-06-24T21:20:00+02:00
Upload for unstable as 2026.6.2a0+dfsg-2

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+python-cogent (2026.6.2a0+dfsg-2) unstable; urgency=medium
+
+  * Team upload.
+  * Drop <!nocheck> from python3-loky.
+    Fixes FTBFS with nocheck build profile.
+  * Drop "Rules-Requires-Root: no" (default).
+  * Drop "Priority: optional" (default).
+
+ -- Santiago Vila <sanvila at debian.org>  Wed, 24 Jun 2026 21:20:00 +0200
+
 python-cogent (2026.6.2a0+dfsg-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -4,7 +4,6 @@ Uploaders: Steffen Moeller <moeller at debian.org>,
            Andreas Tille <tille at debian.org>,
 Section: python
 Testsuite: autopkgtest-pkg-pybuild
-Priority: optional
 Build-Depends: architecture-is-64-bit,
                architecture-is-little-endian,
                cython3,
@@ -20,7 +19,7 @@ Build-Depends: architecture-is-64-bit,
                python3-jupyter-sphinx,
                python3-jupyter-sphinx-theme,
                python3-jupyterlab-server,
-               python3-loky <!nocheck>,
+               python3-loky,
                python3-matplotlib,
                python3-nbsphinx,
                python3-numba,
@@ -49,7 +48,6 @@ Standards-Version: 4.7.4
 Vcs-Browser: https://salsa.debian.org/med-team/python-cogent
 Vcs-Git: https://salsa.debian.org/med-team/python-cogent.git
 Homepage: https://github.com/cogent3/cogent3
-Rules-Requires-Root: no
 
 Package: python3-cogent3
 Architecture: any



View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/a3e53891b4488960b6c093e82eb375fd1809a7b5...650ffb3288ecfcae07ba23b57a357f4f189bf303

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/a3e53891b4488960b6c093e82eb375fd1809a7b5...650ffb3288ecfcae07ba23b57a357f4f189bf303
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