[med-svn] [Git][med-team/barrnap][master] add patch to make help output deterministic

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / barrnap


Commits:
8f161c16 by Sascha Steinbiss at 2026-03-21T09:11:55+01:00
add patch to make help output deterministic

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/deterministic_output.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+barrnap (1.0.0-2) unstable; urgency=medium
+
+  * Add patch to make help output deterministic.
+    This makes the build reproducible again.
+
+ -- Sascha Steinbiss <satta at debian.org>  Sat, 21 Mar 2026 09:06:30 +0100
+
 barrnap (1.0.0-1) unstable; urgency=medium
 
   * New upstream release.


=====================================
debian/patches/deterministic_output.patch
=====================================
@@ -0,0 +1,19 @@
+Description: make kingdom output deterministic
+ The man page is generated from the help output of the main executable,
+ which will display values from a Perl hash as potential options. Since
+ the order of hash values in Perl is nondeterministic, they need to be
+ explicitly sorted to get a reproducible output.
+Author: Sascha Steinbiss <satta at debian.org>
+Forwarded: https://github.com/tseemann/barrnap/pull/107
+Last-Update: 2026-03-21
+--- a/bin/barrnap
++++ b/bin/barrnap
+@@ -247,7 +247,7 @@
+     {OPT=>"help",    VAR=>\&usage,             DESC=>"This help"},
+     {OPT=>"version", VAR=>\&version,           DESC=>"Print version and exit"},
+     {OPT=>"citation",VAR=>\&show_citation,     DESC=>"Print citation for referencing $EXE"},
+-    {OPT=>"kingdom=s", VAR=>\$kingdom,  DEFAULT=>'bac', DESC=>"Kingdom: ".join(' ', values %KINGDOM) },
++    {OPT=>"kingdom=s", VAR=>\$kingdom,  DEFAULT=>'bac', DESC=>"Kingdom: ".join(' ', sort values %KINGDOM) },
+     {OPT=>"quiet!",  VAR=>\$quiet, DEFAULT=>0, DESC=>"No screen output"},
+     {OPT=>"threads=i",  VAR=>\$threads, DEFAULT=>1,  DESC=>"Number of threads/cores/CPUs to use"},
+     {OPT=>"lencutoff=f",VAR=>\$lencutoff, DEFAULT=>0.8, DESC=>"Proportional length threshold to label as partial"},


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 use_debian_dirs
+deterministic_output.patch



View it on GitLab: https://salsa.debian.org/med-team/barrnap/-/commit/8f161c16bcba2ac801d251d84a9ff4281f201d4f

-- 
View it on GitLab: https://salsa.debian.org/med-team/barrnap/-/commit/8f161c16bcba2ac801d251d84a9ff4281f201d4f
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