[med-svn] [Git][med-team/jmodeltest][master] 7 commits: drop "Rules-Requires-Root: no": it is the default now
Alexandre Detiste (@detiste-guest)
gitlab at salsa.debian.org
Thu May 14 20:54:48 BST 2026
Alexandre Detiste pushed to branch master at Debian Med / jmodeltest
Commits:
dfaf6942 by Alexandre Detiste at 2026-05-14T21:51:30+02:00
drop "Rules-Requires-Root: no": it is the default now
- - - - -
7e467a16 by Alexandre Detiste at 2026-05-14T21:51:59+02:00
bump Standards-Version to 4.7.4, drop Priority: tag
- - - - -
b5ea2b4d by Alexandre Detiste at 2026-05-14T21:52:32+02:00
rewrite d/rules with newer & shorter syntax
- - - - -
d2a48d98 by Alexandre Detiste at 2026-05-14T21:52:49+02:00
wrap-and-sort -ast
- - - - -
68278824 by Alexandre Detiste at 2026-05-14T21:53:42+02:00
use dh-cruft to register & purge /var/log/jmodeltest
- - - - -
3104b8fc by Alexandre Detiste at 2026-05-14T21:54:21+02:00
disable useless Salsa CI jobs
- - - - -
76555993 by Alexandre Detiste at 2026-05-14T21:54:42+02:00
release
- - - - -
8 changed files:
- debian/changelog
- debian/control
- debian/install
- debian/links
- − debian/postrm
- + debian/purge
- debian/rules
- debian/salsa-ci.yml
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+jmodeltest (2.1.10+dfsg-14) unstable; urgency=medium
+
+ * Team upload.
+ * Drop "Rules-Requires-Root: no": it is the default now
+ * Bump Standards-Version to 4.7.4, drop Priority: tag
+ * Rewrite d/rules with newer & shorter syntax
+ * Use dh-cruft to register & purge /var/log/jmodeltest
+ * Disable useless Salsa CI jobs
+
+ -- Alexandre Detiste <tchet at debian.org> Thu, 14 May 2026 21:54:25 +0200
+
jmodeltest (2.1.10+dfsg-13) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,35 +1,37 @@
Source: jmodeltest
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- javahelper,
- default-jdk,
- ant,
- alter-sequence-alignment,
- libfreemarker-java,
- libjcommon-java,
- libjfreechart-java,
- libmpj-java,
- libpal-java,
- prottest,
- texlive-latex-base,
- texlive-fonts-recommended,
- texlive-latex-recommended,
- texlive-latex-extra
-Standards-Version: 4.7.2
+Build-Depends:
+ debhelper-compat (= 13),
+ dh-sequence-cruft,
+ alter-sequence-alignment,
+ ant,
+ default-jdk,
+ javahelper,
+ libfreemarker-java,
+ libjcommon-java,
+ libjfreechart-java,
+ libmpj-java,
+ libpal-java,
+ prottest,
+ texlive-fonts-recommended,
+ texlive-latex-base,
+ texlive-latex-extra,
+ texlive-latex-recommended,
+Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/med-team/jmodeltest
Vcs-Git: https://salsa.debian.org/med-team/jmodeltest.git
Homepage: https://github.com//ddarriba/jmodeltest2
-Rules-Requires-Root: no
Package: jmodeltest
Architecture: all
-Depends: ${misc:Depends},
- ${java:Depends},
- java-wrappers,
- phyml
+Depends:
+ java-wrappers,
+ phyml,
+ ${java:Depends},
+ ${misc:Depends},
Description: HPC selection of models of nucleotide substitution
jModelTest is a tool to carry out statistical selection of best-fit
models of nucleotide substitution. It implements five different model
=====================================
debian/install
=====================================
@@ -1,8 +1,8 @@
-dist/jModelTest.jar usr/share/jmodeltest
debian/bin usr
dist/conf/* etc/jmodeltest/
dist/example-data usr/share/jmodeltest
dist/extra/*.template usr/share/jmodeltest/extra
dist/extra/machines usr/share/jmodeltest/extra
+dist/jModelTest.jar usr/share/jmodeltest
dist/resources usr/share/jmodeltest
dist/trees usr/share/jmodeltest
=====================================
debian/links
=====================================
@@ -1,4 +1,4 @@
-usr/share/jmodeltest/jModelTest.jar usr/share/java/jmodeltest.jar
etc/jmodeltest usr/share/jmodeltest/conf
-var/log/jmodeltest usr/share/jmodeltest/log
+usr/share/jmodeltest/jModelTest.jar usr/share/java/jmodeltest.jar
usr/share/man/man1/runjmodeltest-gui.1.gz usr/share/man/man1/jmodeltest.1.gz
+var/log/jmodeltest usr/share/jmodeltest/log
=====================================
debian/postrm deleted
=====================================
@@ -1,23 +0,0 @@
-#!/bin/sh
-set -e
-
-LOGDIR=/var/log/jmodeltest
-
-case "$1" in
- purge)
- rm -rf $LOGDIR
- ;;
- remove|upgrade|deconfigure|failed-upgrade)
- ;;
-
- *)
- echo "postrm called with unknown argument \`$1'" >&2
- exit 1
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
-
-
=====================================
debian/purge
=====================================
@@ -0,0 +1 @@
+/var/log/jmodeltest/
=====================================
debian/rules
=====================================
@@ -10,8 +10,7 @@ JAVA_HOME=/usr/lib/jvm/default-java
%:
dh $@ --with javahelper
-override_dh_auto_build:
- dh_auto_build
+execute_after_dh_auto_build:
cd manual && pdflatex manual.tex && bibtex manual && pdflatex manual.tex && pdflatex manual.tex
override_dh_installchangelogs:
=====================================
debian/salsa-ci.yml
=====================================
@@ -1,4 +1,8 @@
---
include:
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml
+
+variables:
+ SALSA_CI_DISABLE_BLHC: 1
+ SALSA_CI_DISABLE_BUILD_PACKAGE_ALL: 1
+ SALSA_CI_DISABLE_BUILD_PACKAGE_ANY: 1
View it on GitLab: https://salsa.debian.org/med-team/jmodeltest/-/compare/1937c625d0e2fa83d8d1d9bfe7e4722f0007d3b4...765559932049fac34ab183d367a6091549e6e2f8
--
View it on GitLab: https://salsa.debian.org/med-team/jmodeltest/-/compare/1937c625d0e2fa83d8d1d9bfe7e4722f0007d3b4...765559932049fac34ab183d367a6091549e6e2f8
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