[med-svn] [Git][med-team/ugene][upstream] New upstream version 53.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / ugene


Commits:
8f738cc4 by Pierre Gruet at 2026-05-18T22:10:48+02:00
New upstream version 53.1+dfsg
- - - - -


4961 changed files:

- .github/FUNDING.yml
- − .travis.yml
- README.md
- − _config.yml
- cmake/Plugin.cmake
- cmake/Version.cmake
- data/DBXRefRegistry.txt
- data/workflow_samples/NGS/fastqc.uwl
- data/workflow_samples/NGS/ngs_assembly_illumina_pe.uwl
- data/workflow_samples/NGS/ngs_assembly_illumina_pe_nanopore.uwl
- data/workflow_samples/NGS/ngs_assembly_illumina_se.uwl
- data/workflow_samples/NGS/ngs_transcriptomics_tophat_stringtie.uwl
- data/workflow_samples/NGS/ngs_variant_annotation.uwl
- data/workflow_samples/NGS/ngs_variant_calling_full.uwl
- data/workflow_samples/Scenarios/length_filter.uwl
- data/workflow_samples/Scenarios/pcr.uwl
- etc/script/mac/bundle.sh
- etc/script/mac/dmg/Info.plist
- etc/script/mac/release.sh
- etc/script/mac/run_gui_tests.sh
- + etc/script/mac/run_video_recorder.sh
- − src/corelibs/U2Algorithm/U2Algorithm.pri
- − src/corelibs/U2Algorithm/U2Algorithm.pro
- src/corelibs/U2Algorithm/src/misc/BitsTable.cpp
- src/corelibs/U2Algorithm/src/misc/BitsTable.h
- src/corelibs/U2Algorithm/src/misc/CDSearchTaskFactory.h
- src/corelibs/U2Algorithm/src/misc/DnaAssemblyMultiTask.cpp
- src/corelibs/U2Algorithm/src/misc/DnaAssemblyMultiTask.h
- src/corelibs/U2Algorithm/src/misc/DynTable.h
- src/corelibs/U2Algorithm/src/misc/EnzymeModel.cpp
- src/corelibs/U2Algorithm/src/misc/EnzymeModel.h
- src/corelibs/U2Algorithm/src/misc/FindAlgorithm.cpp
- src/corelibs/U2Algorithm/src/misc/FindAlgorithm.h
- src/corelibs/U2Algorithm/src/misc/FindAlgorithmTask.cpp
- src/corelibs/U2Algorithm/src/misc/FindAlgorithmTask.h
- src/corelibs/U2Algorithm/src/misc/GenomeAssemblyMultiTask.cpp
- src/corelibs/U2Algorithm/src/misc/GenomeAssemblyMultiTask.h
- src/corelibs/U2Algorithm/src/misc/RepeatFinderSettings.h
- src/corelibs/U2Algorithm/src/misc/RepeatFinderTaskFactory.h
- src/corelibs/U2Algorithm/src/misc/RollingArray.h
- src/corelibs/U2Algorithm/src/misc/RollingMatrix.h
- src/corelibs/U2Algorithm/src/misc/SequenceContentFilterTask.cpp
- src/corelibs/U2Algorithm/src/misc/SequenceContentFilterTask.h
- src/corelibs/U2Algorithm/src/misc/SyncSort.h
- src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/GeomUtils.h
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurface.h
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/MolecularSurfaceFactoryRegistry.h
- src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.cpp
- src/corelibs/U2Algorithm/src/molecular_geometry/VanDerWaalsSurface.h
- src/corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h
- src/corelibs/U2Algorithm/src/msa_alignment/AlignSequencesToAlignmentTaskSettings.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/AlignSequencesToAlignmentTaskSettings.h
- src/corelibs/U2Algorithm/src/msa_alignment/BaseAlignmentAlgorithmIds.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/BaseAlignmentAlgorithmIds.h
- src/corelibs/U2Algorithm/src/msa_alignment/SimpleAddingToAlignment.cpp
- src/corelibs/U2Algorithm/src/msa_alignment/SimpleAddingToAlignment.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/NWAligner.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/NWAligner.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAligner.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAligner.h
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h
- src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.cpp
- src/corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.cpp
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.h
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.cpp
- src/corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h
- src/corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h
- src/corelibs/U2Algorithm/src/registry/CDSearchTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyAlgRegistry.h
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.cpp
- src/corelibs/U2Algorithm/src/registry/DnaAssemblyTask.h
- src/corelibs/U2Algorithm/src/registry/GenomeAssemblyRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/GenomeAssemblyRegistry.h
- src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/RepeatFinderTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SecStructPredictAlgRegistry.h
- src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.cpp
- src/corelibs/U2Algorithm/src/registry/SecStructPredictTask.h
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTask.cpp
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTask.h
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTaskRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SplicedAlignmentTaskRegistry.h
- src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.cpp
- src/corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignExternalPropTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignExternalPropTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTagsRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignResultNamesTagsRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSeqPrefixTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSeqPrefixTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSubseqPropTag.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWMulAlignSubseqPropTag.h
- src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.cpp
- src/corelibs/U2Algorithm/src/smith_waterman/SmithWatermanUtil.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithm.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmFactory.h
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/structural_alignment/StructuralAlignmentAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithm.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmDefault.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmDefault.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmSamtools.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusAlgorithmSamtools.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusUtils.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/AssemblyConsensusUtils.h
- src/corelibs/U2Algorithm/src/util_assembly_consensus/BuiltInAssemblyConsensusAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_assembly_consensus/BuiltInAssemblyConsensusAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/BuiltInConsensusAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MaConsensusAlgorithmSimpleExtended.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MaConsensusAlgorithmSimpleExtended.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithm.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmClustal.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmClustal.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmDefault.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmDefault.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmLevitsky.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmLevitsky.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmStrict.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusAlgorithmStrict.h
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusUtils.cpp
- src/corelibs/U2Algorithm/src/util_msa_consensus/MsaConsensusUtils.h
- src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/BuiltInDistanceAlgorithms.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithm.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHamming.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHamming.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHammingRevCompl.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmHammingRevCompl.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmRegistry.h
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmSimilarity.cpp
- src/corelibs/U2Algorithm/src/util_msa_distance/MsaDistanceAlgorithmSimilarity.h
- src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/CreateSubalignmentTask.h
- src/corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/ColorSchemeUtils.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/ColorSchemeUtils.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorScheme.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorScheme.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeClustalX.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeClustalX.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeCustom.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeCustom.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdententityGrayscale.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdententityGrayscale.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdentity.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemePercentageIdentity.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeStatic.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeStatic.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeWeakSimilarities.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/MsaColorSchemeWeakSimilarities.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/ColumnCharsCounter.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/ColumnCharsCounter.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColored.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColored.h
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColoredFactory.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity/colored/MsaColorSchemePercentageIdententityColoredFactory.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingScheme.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingScheme.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeAgreements.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeAgreements.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeConservation.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeConservation.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeDisagreements.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeDisagreements.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeGaps.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeGaps.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeNoColors.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeNoColors.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransitions.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransitions.h
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransversions.cpp
- src/corelibs/U2Algorithm/src/util_msaedit/highlighting_schemes/MsaHighlightingSchemeTransversions.h
- src/corelibs/U2Algorithm/src/util_orf/ORFAlgorithmTask.cpp
- src/corelibs/U2Algorithm/src/util_orf/ORFAlgorithmTask.h
- src/corelibs/U2Algorithm/src/util_orf/ORFFinder.cpp
- src/corelibs/U2Algorithm/src/util_orf/ORFFinder.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayBasedFindTask.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayBasedFindTask.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndex.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndex.h
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndexSerializer.cpp
- src/corelibs/U2Algorithm/src/util_sarray/SArrayIndexSerializer.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/BuiltInPWMConversionAlgorithms.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithm.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmBVH.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmLOD.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmMCH.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmNLG.h
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.cpp
- src/corelibs/U2Algorithm/src/util_weight_matrix/PWMConversionAlgorithmRegistry.h
- src/corelibs/U2Algorithm/transl/russian.ts
- src/corelibs/U2Algorithm/transl/turkish.ts
- − src/corelibs/U2Core/U2Core.pri
- − src/corelibs/U2Core/U2Core.pro
- src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineCoreOptions.h
- src/corelibs/U2Core/src/cmdline/CMDLineHelpProvider.h
- src/corelibs/U2Core/src/cmdline/CMDLineRegistry.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineRegistry.h
- src/corelibs/U2Core/src/cmdline/CMDLineUtils.cpp
- src/corelibs/U2Core/src/cmdline/CMDLineUtils.h
- src/corelibs/U2Core/src/datatype/Annotation.cpp
- src/corelibs/U2Core/src/datatype/Annotation.h
- src/corelibs/U2Core/src/datatype/AnnotationData.cpp
- src/corelibs/U2Core/src/datatype/AnnotationData.h
- src/corelibs/U2Core/src/datatype/AnnotationGroup.cpp
- src/corelibs/U2Core/src/datatype/AnnotationGroup.h
- src/corelibs/U2Core/src/datatype/AnnotationModification.cpp
- src/corelibs/U2Core/src/datatype/AnnotationModification.h
- src/corelibs/U2Core/src/datatype/AnnotationSettings.cpp
- src/corelibs/U2Core/src/datatype/AnnotationSettings.h
- src/corelibs/U2Core/src/datatype/AnnotationTableObjectConstraints.cpp
- src/corelibs/U2Core/src/datatype/AnnotationTableObjectConstraints.h
- src/corelibs/U2Core/src/datatype/BaseAlphabets.cpp
- src/corelibs/U2Core/src/datatype/BaseTranslations.cpp
- src/corelibs/U2Core/src/datatype/BioStruct3D.cpp
- src/corelibs/U2Core/src/datatype/BioStruct3D.h
- src/corelibs/U2Core/src/datatype/Chromatogram.cpp
- src/corelibs/U2Core/src/datatype/Chromatogram.h
- src/corelibs/U2Core/src/datatype/DIProperties.h
- src/corelibs/U2Core/src/datatype/DNAAlphabet.cpp
- src/corelibs/U2Core/src/datatype/DNAAlphabet.h
- src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.cpp
- src/corelibs/U2Core/src/datatype/DNAAlphabetRegistryImpl.h
- src/corelibs/U2Core/src/datatype/DNAInfo.cpp
- src/corelibs/U2Core/src/datatype/DNAInfo.h
- src/corelibs/U2Core/src/datatype/DNAQuality.cpp
- src/corelibs/U2Core/src/datatype/DNAQuality.h
- src/corelibs/U2Core/src/datatype/DNASequence.cpp
- src/corelibs/U2Core/src/datatype/DNASequence.h
- src/corelibs/U2Core/src/datatype/DNASequenceUtils.cpp
- src/corelibs/U2Core/src/datatype/DNASequenceUtils.h
- src/corelibs/U2Core/src/datatype/DNATranslation.cpp
- src/corelibs/U2Core/src/datatype/DNATranslation.h
- src/corelibs/U2Core/src/datatype/DNATranslationImpl.cpp
- src/corelibs/U2Core/src/datatype/DNATranslationImpl.h
- src/corelibs/U2Core/src/datatype/FeatureColors.cpp
- src/corelibs/U2Core/src/datatype/FeatureColors.h
- src/corelibs/U2Core/src/datatype/Matrix44.cpp
- src/corelibs/U2Core/src/datatype/Matrix44.h
- src/corelibs/U2Core/src/datatype/PFMatrix.cpp
- src/corelibs/U2Core/src/datatype/PFMatrix.h
- src/corelibs/U2Core/src/datatype/PWMatrix.cpp
- src/corelibs/U2Core/src/datatype/PWMatrix.h
- src/corelibs/U2Core/src/datatype/PhyTree.cpp
- src/corelibs/U2Core/src/datatype/PhyTree.h
- src/corelibs/U2Core/src/datatype/SMatrix.cpp
- src/corelibs/U2Core/src/datatype/SMatrix.h
- src/corelibs/U2Core/src/datatype/U2Alphabet.h
- src/corelibs/U2Core/src/datatype/U2Assembly.h
- src/corelibs/U2Core/src/datatype/U2Attribute.h
- src/corelibs/U2Core/src/datatype/U2CoreAttributes.cpp
- src/corelibs/U2Core/src/datatype/U2CoreAttributes.h
- src/corelibs/U2Core/src/datatype/U2Feature.h
- src/corelibs/U2Core/src/datatype/U2FeatureKeys.h
- src/corelibs/U2Core/src/datatype/U2FeatureType.cpp
- src/corelibs/U2Core/src/datatype/U2FeatureType.h
- src/corelibs/U2Core/src/datatype/U2IdTypes.h
- src/corelibs/U2Core/src/datatype/U2Identity.h
- src/corelibs/U2Core/src/datatype/U2Location.h
- src/corelibs/U2Core/src/datatype/U2Mod.cpp
- src/corelibs/U2Core/src/datatype/U2Mod.h
- src/corelibs/U2Core/src/datatype/U2Msa.cpp
- src/corelibs/U2Core/src/datatype/U2Msa.h
- src/corelibs/U2Core/src/datatype/U2Qualifier.cpp
- src/corelibs/U2Core/src/datatype/U2Qualifier.h
- src/corelibs/U2Core/src/datatype/U2Range.h
- src/corelibs/U2Core/src/datatype/U2RawData.h
- src/corelibs/U2Core/src/datatype/U2Region.cpp
- src/corelibs/U2Core/src/datatype/U2Region.h
- src/corelibs/U2Core/src/datatype/U2Sequence.h
- src/corelibs/U2Core/src/datatype/U2Type.cpp
- src/corelibs/U2Core/src/datatype/U2Type.h
- src/corelibs/U2Core/src/datatype/U2TypeIds.h
- src/corelibs/U2Core/src/datatype/U2Variant.cpp
- src/corelibs/U2Core/src/datatype/U2Variant.h
- src/corelibs/U2Core/src/datatype/UdrRecord.cpp
- src/corelibs/U2Core/src/datatype/UdrRecord.h
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- src/corelibs/U2Core/src/util/U1AnnotationUtils.h
- src/corelibs/U2Core/src/util/U2AlphabetUtils.cpp
- src/corelibs/U2Core/src/util/U2AlphabetUtils.h
- src/corelibs/U2Core/src/util/U2AssemblyReadIterator.cpp
- src/corelibs/U2Core/src/util/U2AssemblyReadIterator.h
- src/corelibs/U2Core/src/util/U2AssemblyUtils.cpp
- src/corelibs/U2Core/src/util/U2AssemblyUtils.h
- src/corelibs/U2Core/src/util/U2AttributeUtils.cpp
- src/corelibs/U2Core/src/util/U2AttributeUtils.h
- src/corelibs/U2Core/src/util/U2Bits.cpp
- src/corelibs/U2Core/src/util/U2Bits.h
- src/corelibs/U2Core/src/util/U2DbiUpgrader.cpp
- src/corelibs/U2Core/src/util/U2DbiUpgrader.h
- src/corelibs/U2Core/src/util/U2FeatureUtils.cpp
- src/corelibs/U2Core/src/util/U2FeatureUtils.h
- src/corelibs/U2Core/src/util/U2ObjectTypeUtils.cpp
- src/corelibs/U2Core/src/util/U2ObjectTypeUtils.h
- src/corelibs/U2Core/src/util/U2OpStatusUtils.h
- src/corelibs/U2Core/src/util/U2SequenceUtils.cpp
- src/corelibs/U2Core/src/util/U2SequenceUtils.h
- src/corelibs/U2Core/src/util/U2VariationUtils.cpp
- src/corelibs/U2Core/src/util/U2VariationUtils.h
- src/corelibs/U2Core/src/util/VariationPropertiesUtils.h
- src/corelibs/U2Core/transl/russian.ts
- src/corelibs/U2Core/transl/turkish.ts
- − src/corelibs/U2Designer/U2Designer.pri
- − src/corelibs/U2Designer/U2Designer.pro
- src/corelibs/U2Designer/U2Designer.qrc
- − src/corelibs/U2Designer/images/add.png
- + src/corelibs/U2Designer/images/dark/background-menu-button.png
- + src/corelibs/U2Designer/images/dark/background-menu.png
- + src/corelibs/U2Designer/images/dark/background.png
- + src/corelibs/U2Designer/images/dark/blue_circle.png
- + src/corelibs/U2Designer/images/dark/down.png
- + src/corelibs/U2Designer/images/dark/load_schema.png
- + src/corelibs/U2Designer/images/dark/outside.png
- + src/corelibs/U2Designer/images/dark/up.png
- − src/corelibs/U2Designer/images/database_add.png
- − src/corelibs/U2Designer/images/file.png
- src/corelibs/U2Designer/images/background-menu-button.png → src/corelibs/U2Designer/images/light/background-menu-button.png
- src/corelibs/U2Designer/images/background-menu.png → src/corelibs/U2Designer/images/light/background-menu.png
- src/corelibs/U2Designer/images/background.png → src/corelibs/U2Designer/images/light/background.png
- src/corelibs/U2Designer/images/blue_circle.png → src/corelibs/U2Designer/images/light/blue_circle.png
- src/corelibs/U2Designer/images/down.png → src/corelibs/U2Designer/images/light/down.png
- src/corelibs/U2Designer/images/load_schema.png → src/corelibs/U2Designer/images/light/load_schema.png
- src/corelibs/U2Designer/images/outside.png → src/corelibs/U2Designer/images/light/outside.png
- src/corelibs/U2Designer/images/up.png → src/corelibs/U2Designer/images/light/up.png
- − src/corelibs/U2Designer/images/settings.png
- src/corelibs/U2Designer/src/BreakpointHitCountDialog.cpp
- src/corelibs/U2Designer/src/BreakpointHitCountDialog.h
- src/corelibs/U2Designer/src/DatasetWidget.cpp
- src/corelibs/U2Designer/src/DatasetWidget.h
- src/corelibs/U2Designer/src/DatasetsController.cpp
- src/corelibs/U2Designer/src/DatasetsController.h
- src/corelibs/U2Designer/src/DatasetsListWidget.cpp
- src/corelibs/U2Designer/src/DatasetsListWidget.h
- src/corelibs/U2Designer/src/DbFolderItem.cpp
- src/corelibs/U2Designer/src/DbFolderItem.h
- src/corelibs/U2Designer/src/DbObjectItem.cpp
- src/corelibs/U2Designer/src/DbObjectItem.h
- src/corelibs/U2Designer/src/DelegateEditors.cpp
- src/corelibs/U2Designer/src/DelegateEditors.h
- src/corelibs/U2Designer/src/DesignerUtils.cpp
- src/corelibs/U2Designer/src/DesignerUtils.h
- src/corelibs/U2Designer/src/DirectoryItem.cpp
- src/corelibs/U2Designer/src/DirectoryItem.h
- src/corelibs/U2Designer/src/EditBreakpointLabelsDialog.cpp
- src/corelibs/U2Designer/src/EditBreakpointLabelsDialog.h
- src/corelibs/U2Designer/src/EditMarkerGroupDialog.cpp
- src/corelibs/U2Designer/src/EditMarkerGroupDialog.h
- src/corelibs/U2Designer/src/EstimationReporter.cpp
- src/corelibs/U2Designer/src/EstimationReporter.h
- src/corelibs/U2Designer/src/FileItem.cpp
- src/corelibs/U2Designer/src/FileItem.h
- src/corelibs/U2Designer/src/GrouperEditor.cpp
- src/corelibs/U2Designer/src/GrouperEditor.h
- src/corelibs/U2Designer/src/GrouperEditorWidget.cpp
- src/corelibs/U2Designer/src/GrouperEditorWidget.h
- src/corelibs/U2Designer/src/MarkerEditor.cpp
- src/corelibs/U2Designer/src/MarkerEditor.h
- src/corelibs/U2Designer/src/MarkerEditorWidget.cpp
- src/corelibs/U2Designer/src/MarkerEditorWidget.h
- src/corelibs/U2Designer/src/NewBreakpointDialog.cpp
- src/corelibs/U2Designer/src/NewBreakpointDialog.h
- src/corelibs/U2Designer/src/NewGrouperSlotDialog.cpp
- src/corelibs/U2Designer/src/NewGrouperSlotDialog.h
- src/corelibs/U2Designer/src/OutputFileDialog.cpp
- src/corelibs/U2Designer/src/OutputFileDialog.h
- + src/corelibs/U2Designer/src/PrompterBase.cpp
- + src/corelibs/U2Designer/src/PrompterBase.h
- src/corelibs/U2Designer/src/PropertyWidget.cpp
- src/corelibs/U2Designer/src/PropertyWidget.h
- src/corelibs/U2Designer/src/QDScheduler.cpp
- src/corelibs/U2Designer/src/QDScheduler.h
- src/corelibs/U2Designer/src/UrlItem.cpp
- src/corelibs/U2Designer/src/UrlItem.h
- src/corelibs/U2Designer/src/WorkflowGUIUtils.cpp
- src/corelibs/U2Designer/src/WorkflowGUIUtils.h
- src/corelibs/U2Designer/src/dashboard/Dashboard.cpp
- src/corelibs/U2Designer/src/dashboard/Dashboard.h
- src/corelibs/U2Designer/src/dashboard/DashboardInfo.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardInfo.h
- src/corelibs/U2Designer/src/dashboard/DashboardInfoRegistry.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardInfoRegistry.h
- src/corelibs/U2Designer/src/dashboard/DashboardTabPage.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardTabPage.h
- src/corelibs/U2Designer/src/dashboard/DashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/DashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/DomUtils.cpp
- src/corelibs/U2Designer/src/dashboard/DomUtils.h
- src/corelibs/U2Designer/src/dashboard/ExternalToolsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/ExternalToolsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/NotificationsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/NotificationsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/OutputFilesDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/OutputFilesDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/ParametersDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/ParametersDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/RemoveDashboardsTask.cpp
- src/corelibs/U2Designer/src/dashboard/RemoveDashboardsTask.h
- src/corelibs/U2Designer/src/dashboard/ScanDashboardsDirTask.cpp
- src/corelibs/U2Designer/src/dashboard/ScanDashboardsDirTask.h
- src/corelibs/U2Designer/src/dashboard/StatisticsDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/StatisticsDashboardWidget.h
- src/corelibs/U2Designer/src/dashboard/StatusDashboardWidget.cpp
- src/corelibs/U2Designer/src/dashboard/StatusDashboardWidget.h
- src/corelibs/U2Designer/src/support/OutputDirectoryWidget.cpp
- src/corelibs/U2Designer/src/support/OutputDirectoryWidget.h
- src/corelibs/U2Designer/src/support/URLLineEdit.cpp
- src/corelibs/U2Designer/src/support/URLLineEdit.h
- src/corelibs/U2Designer/src/wizard/BowtieWidgetController.cpp
- src/corelibs/U2Designer/src/wizard/BowtieWidgetController.h
- src/corelibs/U2Designer/src/wizard/ElementSelectorController.cpp
- src/corelibs/U2Designer/src/wizard/ElementSelectorController.h
- src/corelibs/U2Designer/src/wizard/PairedDatasetsController.cpp
- src/corelibs/U2Designer/src/wizard/PairedDatasetsController.h
- src/corelibs/U2Designer/src/wizard/PropertyWizardController.cpp
- src/corelibs/U2Designer/src/wizard/PropertyWizardController.h
- src/corelibs/U2Designer/src/wizard/RadioController.cpp
- src/corelibs/U2Designer/src/wizard/RadioController.h
- src/corelibs/U2Designer/src/wizard/SelectorActors.cpp
- src/corelibs/U2Designer/src/wizard/SelectorActors.h
- src/corelibs/U2Designer/src/wizard/SettingsController.cpp
- src/corelibs/U2Designer/src/wizard/SettingsController.h
- src/corelibs/U2Designer/src/wizard/TophatSamplesWidgetController.cpp
- src/corelibs/U2Designer/src/wizard/TophatSamplesWidgetController.h
- src/corelibs/U2Designer/src/wizard/UrlAndDatasetWizardController.cpp
- src/corelibs/U2Designer/src/wizard/UrlAndDatasetWizardController.h
- src/corelibs/U2Designer/src/wizard/WDWizardPage.cpp
- src/corelibs/U2Designer/src/wizard/WDWizardPage.h
- src/corelibs/U2Designer/src/wizard/WidgetController.cpp
- src/corelibs/U2Designer/src/wizard/WidgetController.h
- src/corelibs/U2Designer/src/wizard/WizardController.cpp
- src/corelibs/U2Designer/src/wizard/WizardController.h
- src/corelibs/U2Designer/src/wizard/WizardPageController.cpp
- src/corelibs/U2Designer/src/wizard/WizardPageController.h
- src/corelibs/U2Designer/transl/russian.ts
- src/corelibs/U2Designer/transl/turkish.ts
- − src/corelibs/U2Formats/U2Formats.pri
- − src/corelibs/U2Formats/U2Formats.pro
- src/corelibs/U2Formats/src/ABIFormat.cpp
- src/corelibs/U2Formats/src/ABIFormat.h
- src/corelibs/U2Formats/src/ASNFormat.cpp
- src/corelibs/U2Formats/src/ASNFormat.h
- src/corelibs/U2Formats/src/AbstractVariationFormat.cpp
- src/corelibs/U2Formats/src/AbstractVariationFormat.h
- src/corelibs/U2Formats/src/BAMUtils.cpp
- src/corelibs/U2Formats/src/BAMUtils.h
- src/corelibs/U2Formats/src/BedFormat.cpp
- src/corelibs/U2Formats/src/BedFormat.h
- src/corelibs/U2Formats/src/ClustalWAlnFormat.cpp
- src/corelibs/U2Formats/src/ClustalWAlnFormat.h
- src/corelibs/U2Formats/src/ColumnDataParser.cpp
- src/corelibs/U2Formats/src/ColumnDataParser.h
- src/corelibs/U2Formats/src/DNAQualityIOUtils.cpp
- src/corelibs/U2Formats/src/DNAQualityIOUtils.h
- src/corelibs/U2Formats/src/Database.cpp
- src/corelibs/U2Formats/src/Database.h
- src/corelibs/U2Formats/src/DifferentialFormat.cpp
- src/corelibs/U2Formats/src/DifferentialFormat.h
- src/corelibs/U2Formats/src/DocumentFormatUtils.cpp
- src/corelibs/U2Formats/src/DocumentFormatUtils.h
- src/corelibs/U2Formats/src/EMBLGenbankAbstractDocument.cpp
- src/corelibs/U2Formats/src/EMBLGenbankAbstractDocument.h
- src/corelibs/U2Formats/src/EMBLPlainTextFormat.cpp
- src/corelibs/U2Formats/src/EMBLPlainTextFormat.h
- src/corelibs/U2Formats/src/FastaFormat.cpp
- src/corelibs/U2Formats/src/FastaFormat.h
- src/corelibs/U2Formats/src/FastqFormat.cpp
- src/corelibs/U2Formats/src/FastqFormat.h
- src/corelibs/U2Formats/src/FpkmTrackingFormat.cpp
- src/corelibs/U2Formats/src/FpkmTrackingFormat.h
- src/corelibs/U2Formats/src/GFFFormat.cpp
- src/corelibs/U2Formats/src/GFFFormat.h
- src/corelibs/U2Formats/src/GTFFormat.cpp
- src/corelibs/U2Formats/src/GTFFormat.h
- src/corelibs/U2Formats/src/GenbankLocationParser.cpp
- src/corelibs/U2Formats/src/GenbankLocationParser.h
- src/corelibs/U2Formats/src/GenbankPlainTextFormat.cpp
- src/corelibs/U2Formats/src/GenbankPlainTextFormat.h
- src/corelibs/U2Formats/src/IOLibUtils.h
- src/corelibs/U2Formats/src/KrakenResultsPlainTextFormat.cpp
- src/corelibs/U2Formats/src/KrakenResultsPlainTextFormat.h
- src/corelibs/U2Formats/src/MSFFormat.cpp
- src/corelibs/U2Formats/src/MSFFormat.h
- src/corelibs/U2Formats/src/MegaFormat.cpp
- src/corelibs/U2Formats/src/MegaFormat.h
- src/corelibs/U2Formats/src/NEXUSFormat.cpp
- src/corelibs/U2Formats/src/NEXUSFormat.h
- src/corelibs/U2Formats/src/NEXUSParser.h
- src/corelibs/U2Formats/src/NewickFormat.cpp
- src/corelibs/U2Formats/src/NewickFormat.h
- src/corelibs/U2Formats/src/PDBFormat.cpp
- src/corelibs/U2Formats/src/PDBFormat.h
- src/corelibs/U2Formats/src/PDWFormat.cpp
- src/corelibs/U2Formats/src/PDWFormat.h
- src/corelibs/U2Formats/src/PhylipFormat.cpp
- src/corelibs/U2Formats/src/PhylipFormat.h
- src/corelibs/U2Formats/src/PlainTextFormat.cpp
- src/corelibs/U2Formats/src/PlainTextFormat.h
- src/corelibs/U2Formats/src/RawDNASequenceFormat.cpp
- src/corelibs/U2Formats/src/RawDNASequenceFormat.h
- src/corelibs/U2Formats/src/SAMFormat.cpp
- src/corelibs/U2Formats/src/SAMFormat.h
- src/corelibs/U2Formats/src/SCFFormat.cpp
- src/corelibs/U2Formats/src/SCFFormat.h
- src/corelibs/U2Formats/src/SNPDatabaseUtils.cpp
- src/corelibs/U2Formats/src/SNPDatabaseUtils.h
- src/corelibs/U2Formats/src/SimpleSNPVariationFormat.cpp
- src/corelibs/U2Formats/src/SimpleSNPVariationFormat.h
- src/corelibs/U2Formats/src/StdResidueDictionary.cpp
- src/corelibs/U2Formats/src/StdResidueDictionary.h
- src/corelibs/U2Formats/src/StockholmFormat.cpp
- src/corelibs/U2Formats/src/StockholmFormat.h
- src/corelibs/U2Formats/src/StreamSequenceReader.cpp
- src/corelibs/U2Formats/src/StreamSequenceReader.h
- src/corelibs/U2Formats/src/StreamSequenceWriter.cpp
- src/corelibs/U2Formats/src/StreamSequenceWriter.h
- src/corelibs/U2Formats/src/SwissProtPlainTextFormat.cpp
- src/corelibs/U2Formats/src/SwissProtPlainTextFormat.h
- src/corelibs/U2Formats/src/TextDocumentFormat.cpp
- src/corelibs/U2Formats/src/TextDocumentFormat.h
- src/corelibs/U2Formats/src/VCF4VariationFormat.cpp
- src/corelibs/U2Formats/src/VCF4VariationFormat.h
- src/corelibs/U2Formats/src/VectorNtiSequenceFormat.cpp
- src/corelibs/U2Formats/src/VectorNtiSequenceFormat.h
- src/corelibs/U2Formats/src/ace/AceFormat.cpp
- src/corelibs/U2Formats/src/ace/AceFormat.h
- src/corelibs/U2Formats/src/ace/AceImportUtils.cpp
- src/corelibs/U2Formats/src/ace/AceImportUtils.h
- src/corelibs/U2Formats/src/ace/AceImporter.cpp
- src/corelibs/U2Formats/src/ace/AceImporter.h
- src/corelibs/U2Formats/src/ace/CloneAssemblyWithReferenceToDbiTask.cpp
- src/corelibs/U2Formats/src/ace/CloneAssemblyWithReferenceToDbiTask.h
- src/corelibs/U2Formats/src/ace/ConvertAceToSqliteTask.cpp
- src/corelibs/U2Formats/src/ace/ConvertAceToSqliteTask.h
- src/corelibs/U2Formats/src/apr/AprFormat.cpp
- src/corelibs/U2Formats/src/apr/AprFormat.h
- src/corelibs/U2Formats/src/apr/AprImporter.cpp
- src/corelibs/U2Formats/src/apr/AprImporter.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAttributeDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteAttributeDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobInputStream.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobInputStream.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobOutputStream.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteBlobOutputStream.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteModDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteModDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteMsaDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteMsaDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectRelationsDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteObjectRelationsDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteUdrDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteUdrDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteVariantDbi.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/SQLiteVariantDbi.h
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/MultiTableAssemblyAdapter.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/MultiTableAssemblyAdapter.h
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/SingleTableAssemblyAdapter.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/assembly/SingleTableAssemblyAdapter.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v13.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v13.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v25.cpp
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v25.h
- src/corelibs/U2Formats/src/sqlite_dbi/util/SqliteUpgrader_v50.cpp
- src/corelibs/U2Formats/src/tasks/BgzipTask.cpp
- src/corelibs/U2Formats/src/tasks/BgzipTask.h
- src/corelibs/U2Formats/src/tasks/CalculateSequencesNumberTask.cpp
- src/corelibs/U2Formats/src/tasks/CalculateSequencesNumberTask.h
- src/corelibs/U2Formats/src/tasks/ConvertAssemblyToSamTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertAssemblyToSamTask.h
- src/corelibs/U2Formats/src/tasks/ConvertFileTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertFileTask.h
- src/corelibs/U2Formats/src/tasks/ConvertSnpeffVariationsToAnnotationsTask.cpp
- src/corelibs/U2Formats/src/tasks/ConvertSnpeffVariationsToAnnotationsTask.h
- src/corelibs/U2Formats/src/tasks/ExportTasks.cpp
- src/corelibs/U2Formats/src/tasks/ExportTasks.h
- src/corelibs/U2Formats/src/tasks/MergeBamTask.cpp
- src/corelibs/U2Formats/src/tasks/MergeBamTask.h
- src/corelibs/U2Formats/src/util/AssemblyAdapter.h
- src/corelibs/U2Formats/src/util/AssemblyPackAlgorithm.cpp
- src/corelibs/U2Formats/src/util/AssemblyPackAlgorithm.h
- src/corelibs/U2Formats/src/util/PairedFastqComparator.cpp
- src/corelibs/U2Formats/src/util/PairedFastqComparator.h
- src/corelibs/U2Formats/src/util/SnpeffInfoParser.cpp
- src/corelibs/U2Formats/src/util/SnpeffInfoParser.h
- src/corelibs/U2Formats/src/util/TabulatedFormatReader.cpp
- src/corelibs/U2Formats/src/util/TabulatedFormatReader.h
- src/corelibs/U2Formats/transl/russian.ts
- src/corelibs/U2Formats/transl/turkish.ts
- − src/corelibs/U2Gui/U2Gui.pri
- − src/corelibs/U2Gui/U2Gui.pro
- src/corelibs/U2Gui/U2Gui.qrc
- − src/corelibs/U2Gui/images/chart_organisation.png
- − src/corelibs/U2Gui/images/clean_empty_bin.png
- − src/corelibs/U2Gui/images/close_tab.png
- + src/corelibs/U2Gui/images/dark/add_column.png
- + src/corelibs/U2Gui/images/dark/add_sequence.png
- + src/corelibs/U2Gui/images/dark/add_tree.png
- + src/corelibs/U2Gui/images/dark/align.png
- + src/corelibs/U2Gui/images/dark/align_tree_labels.png
- + src/corelibs/U2Gui/images/dark/amb_backward.png
- + src/corelibs/U2Gui/images/dark/amb_forward.png
- + src/corelibs/U2Gui/images/dark/arrow-move-left.png
- + src/corelibs/U2Gui/images/dark/arrow-move-right.png
- + src/corelibs/U2Gui/images/dark/arrow_down.png
- + src/corelibs/U2Gui/images/dark/arrow_right.png
- + src/corelibs/U2Gui/images/dark/arrow_rotate_clockwise.png
- + src/corelibs/U2Gui/images/dark/biostruct3d.png
- + src/corelibs/U2Gui/images/dark/cam2.png
- + src/corelibs/U2Gui/images/dark/circular_seq.png
- + src/corelibs/U2Gui/images/dark/close_small.png
- + src/corelibs/U2Gui/images/dark/codon_table.png
- + src/corelibs/U2Gui/images/dark/collapse.png
- + src/corelibs/U2Gui/images/dark/collapse_tree.png
- + src/corelibs/U2Gui/images/dark/collapse_update.png
- + src/corelibs/U2Gui/images/dark/consensus.png
- + src/corelibs/U2Gui/images/dark/copy.png
- + src/corelibs/U2Gui/images/dark/copy_annotation_sequence.png
- + src/corelibs/U2Gui/images/dark/copy_annotation_translation.png
- + src/corelibs/U2Gui/images/dark/copy_complement_annotation_sequence.png
- + src/corelibs/U2Gui/images/dark/copy_complement_annotation_translation.png
- + src/corelibs/U2Gui/images/dark/copy_complement_sequence.png
- + src/corelibs/U2Gui/images/dark/copy_complement_translation.png
- + src/corelibs/U2Gui/images/dark/copy_qualifier.png
- + src/corelibs/U2Gui/images/dark/copy_sequence.png
- + src/corelibs/U2Gui/images/dark/copy_translation.png
- + src/corelibs/U2Gui/images/dark/create_annotation_icon.png
- + src/corelibs/U2Gui/images/dark/database_copy.png
- + src/corelibs/U2Gui/images/dark/database_with_arrow.png
- + src/corelibs/U2Gui/images/dark/details_view.png
- + src/corelibs/U2Gui/images/dark/dna.png
- + src/corelibs/U2Gui/images/dark/edit.png
- + src/corelibs/U2Gui/images/dark/expand_tree.png
- + src/corelibs/U2Gui/images/dark/extract_assembly_region.png
- + src/corelibs/U2Gui/images/dark/find_dialog.png
- + src/corelibs/U2Gui/images/dark/font.png
- + src/corelibs/U2Gui/images/dark/font_default.png
- + src/corelibs/U2Gui/images/dark/gear.svg
- + src/corelibs/U2Gui/images/dark/goto.png
- + src/corelibs/U2Gui/images/dark/graphs.png
- + src/corelibs/U2Gui/images/dark/hide_all_views.png
- + src/corelibs/U2Gui/images/dark/highlight.png
- + src/corelibs/U2Gui/images/dark/inbox-minus.png
- + src/corelibs/U2Gui/images/dark/load_selected_documents.png
- + src/corelibs/U2Gui/images/dark/lock_scales.png
- + src/corelibs/U2Gui/images/dark/mismatch-backward.png
- + src/corelibs/U2Gui/images/dark/mismatch-forward.png
- + src/corelibs/U2Gui/images/dark/msa_save.png
- + src/corelibs/U2Gui/images/dark/msa_save_as.png
- + src/corelibs/U2Gui/images/dark/msaed_remove_all_gaps.png
- + src/corelibs/U2Gui/images/dark/msaed_remove_columns_with_gaps.png
- + src/corelibs/U2Gui/images/dark/multiline_view.png
- + src/corelibs/U2Gui/images/dark/navi_right.png
- + src/corelibs/U2Gui/images/dark/notch.png
- + src/corelibs/U2Gui/images/dark/overview.png
- + src/corelibs/U2Gui/images/dark/paste.png
- + src/corelibs/U2Gui/images/dark/phylip.png
- + src/corelibs/U2Gui/images/dark/predefined_annotation_groups.png
- + src/corelibs/U2Gui/images/dark/printer.png
- + src/corelibs/U2Gui/images/dark/progress.gif
- + src/corelibs/U2Gui/images/dark/refresh.png
- + src/corelibs/U2Gui/images/dark/remove_column.png
- + src/corelibs/U2Gui/images/dark/reroot.png
- + src/corelibs/U2Gui/images/dark/ro_biostruct3d.png
- + src/corelibs/U2Gui/images/dark/ro_dna.png
- + src/corelibs/U2Gui/images/dark/ro_tree.png
- + src/corelibs/U2Gui/images/dark/ruler_coverage.png
- + src/corelibs/U2Gui/images/dark/sam.png
- + src/corelibs/U2Gui/images/dark/select_region.png
- + src/corelibs/U2Gui/images/dark/set_reference.png
- + src/corelibs/U2Gui/images/dark/settings2.png
- + src/corelibs/U2Gui/images/dark/show_all_views.png
- + src/corelibs/U2Gui/images/dark/show_compl.png
- + src/corelibs/U2Gui/images/dark/show_trans.png
- + src/corelibs/U2Gui/images/dark/ssp_logo.png
- + src/corelibs/U2Gui/images/dark/sum.png
- + src/corelibs/U2Gui/images/dark/sw.png
- + src/corelibs/U2Gui/images/dark/swap.png
- + src/corelibs/U2Gui/images/dark/sync-msa-off.png
- + src/corelibs/U2Gui/images/dark/sync-msa-on.png
- + src/corelibs/U2Gui/images/dark/sync_lock.png
- + src/corelibs/U2Gui/images/dark/sync_scales.png
- + src/corelibs/U2Gui/images/dark/text_ab.png
- + src/corelibs/U2Gui/images/dark/tree.png
- + src/corelibs/U2Gui/images/dark/tree_layout.png
- + src/corelibs/U2Gui/images/dark/tt_switch.png
- + src/corelibs/U2Gui/images/dark/unload_document.png
- + src/corelibs/U2Gui/images/dark/wrap_sequence.png
- + src/corelibs/U2Gui/images/dark/zoom_fit.png
- + src/corelibs/U2Gui/images/dark/zoom_in_tree.png
- + src/corelibs/U2Gui/images/dark/zoom_out_tree.png
- + src/corelibs/U2Gui/images/dark/zoom_view.png
- + src/corelibs/U2Gui/images/database_copy.png
- − src/corelibs/U2Gui/images/info.png
- src/corelibs/U2Gui/images/info_notification.png
- − src/corelibs/U2Gui/images/layers.png
- src/corelibs/U2Gui/images/add_column.png → src/corelibs/U2Gui/images/light/add_column.png
- src/corelibs/U2Gui/images/add_sequence.png → src/corelibs/U2Gui/images/light/add_sequence.png
- src/corelibs/U2Gui/images/add_tree.png → src/corelibs/U2Gui/images/light/add_tree.png
- src/corelibs/U2Gui/images/align.png → src/corelibs/U2Gui/images/light/align.png
- src/corelibs/U2Gui/images/align_tree_labels.png → src/corelibs/U2Gui/images/light/align_tree_labels.png
- src/corelibs/U2Gui/images/amb_backward.png → src/corelibs/U2Gui/images/light/amb_backward.png
- src/corelibs/U2Gui/images/amb_forward.png → src/corelibs/U2Gui/images/light/amb_forward.png
- src/corelibs/U2Gui/images/backward.png → src/corelibs/U2Gui/images/light/arrow-move-left.png
- src/corelibs/U2Gui/images/forward.png → src/corelibs/U2Gui/images/light/arrow-move-right.png
- src/corelibs/U2Gui/images/arrow_down.png → src/corelibs/U2Gui/images/light/arrow_down.png
- src/corelibs/U2Gui/images/arrow_right.png → src/corelibs/U2Gui/images/light/arrow_right.png
- src/corelibs/U2Gui/images/arrow_rotate_clockwise.png → src/corelibs/U2Gui/images/light/arrow_rotate_clockwise.png
- src/corelibs/U2Gui/images/biostruct3d.png → src/corelibs/U2Gui/images/light/biostruct3d.png
- src/corelibs/U2Gui/images/cam2.png → src/corelibs/U2Gui/images/light/cam2.png
- src/corelibs/U2Gui/images/circular_seq.png → src/corelibs/U2Gui/images/light/circular_seq.png
- src/corelibs/U2Gui/images/close_small.png → src/corelibs/U2Gui/images/light/close_small.png
- src/corelibs/U2Gui/images/codon_table.png → src/corelibs/U2Gui/images/light/codon_table.png
- src/corelibs/U2Gui/images/collapse.png → src/corelibs/U2Gui/images/light/collapse.png
- src/corelibs/U2Gui/images/collapse_tree.png → src/corelibs/U2Gui/images/light/collapse_tree.png
- src/corelibs/U2Gui/images/collapse_update.png → src/corelibs/U2Gui/images/light/collapse_update.png
- src/corelibs/U2Gui/images/consensus.png → src/corelibs/U2Gui/images/light/consensus.png
- src/corelibs/U2Gui/images/copy_sequence.png → src/corelibs/U2Gui/images/light/copy.png
- src/corelibs/U2Gui/images/copy_annotation_sequence.png → src/corelibs/U2Gui/images/light/copy_annotation_sequence.png
- src/corelibs/U2Gui/images/copy_annotation_translation.png → src/corelibs/U2Gui/images/light/copy_annotation_translation.png
- src/corelibs/U2Gui/images/copy_complement_annotation_sequence.png → src/corelibs/U2Gui/images/light/copy_complement_annotation_sequence.png
- src/corelibs/U2Gui/images/copy_complement_annotation_translation.png → src/corelibs/U2Gui/images/light/copy_complement_annotation_translation.png
- src/corelibs/U2Gui/images/copy_complement_sequence.png → src/corelibs/U2Gui/images/light/copy_complement_sequence.png
- src/corelibs/U2Gui/images/copy_complement_translation.png → src/corelibs/U2Gui/images/light/copy_complement_translation.png
- src/corelibs/U2Gui/images/copy_qualifier.png → src/corelibs/U2Gui/images/light/copy_qualifier.png
- + src/corelibs/U2Gui/images/light/copy_sequence.png
- src/corelibs/U2Gui/images/copy_translation.png → src/corelibs/U2Gui/images/light/copy_translation.png
- src/corelibs/U2Gui/images/create_annotation_icon.png → src/corelibs/U2Gui/images/light/create_annotation_icon.png
- + src/corelibs/U2Gui/images/light/database_copy.png
- src/corelibs/U2Gui/images/database_with_arrow.png → src/corelibs/U2Gui/images/light/database_with_arrow.png
- src/corelibs/U2Gui/images/details_view.png → src/corelibs/U2Gui/images/light/details_view.png
- src/corelibs/U2Gui/images/dna.png → src/corelibs/U2Gui/images/light/dna.png
- src/corelibs/U2Gui/images/edit.png → src/corelibs/U2Gui/images/light/edit.png
- src/corelibs/U2Gui/images/expand_tree.png → src/corelibs/U2Gui/images/light/expand_tree.png
- src/corelibs/U2Gui/images/extract_assembly_region.png → src/corelibs/U2Gui/images/light/extract_assembly_region.png
- src/corelibs/U2Gui/images/find_dialog.png → src/corelibs/U2Gui/images/light/find_dialog.png
- src/corelibs/U2Gui/images/font.png → src/corelibs/U2Gui/images/light/font.png
- src/corelibs/U2Gui/images/font_default.png → src/corelibs/U2Gui/images/light/font_default.png
- src/corelibs/U2Gui/images/gear.svg → src/corelibs/U2Gui/images/light/gear.svg
- src/corelibs/U2Gui/images/goto.png → src/corelibs/U2Gui/images/light/goto.png
- src/corelibs/U2Gui/images/graphs.png → src/corelibs/U2Gui/images/light/graphs.png
- src/corelibs/U2Gui/images/hide_all_views.png → src/corelibs/U2Gui/images/light/hide_all_views.png
- src/corelibs/U2Gui/images/highlight.png → src/corelibs/U2Gui/images/light/highlight.png
- src/corelibs/U2Gui/images/inbox-minus.png → src/corelibs/U2Gui/images/light/inbox-minus.png
- src/corelibs/U2Gui/images/load_selected_documents.png → src/corelibs/U2Gui/images/light/load_selected_documents.png
- src/corelibs/U2Gui/images/lock_scales.png → src/corelibs/U2Gui/images/light/lock_scales.png
- src/corelibs/U2Gui/images/mismatch-backward.png → src/corelibs/U2Gui/images/light/mismatch-backward.png
- src/corelibs/U2Gui/images/mismatch-forward.png → src/corelibs/U2Gui/images/light/mismatch-forward.png
- src/corelibs/U2Gui/images/msa_save.png → src/corelibs/U2Gui/images/light/msa_save.png
- src/corelibs/U2Gui/images/msa_save_as.png → src/corelibs/U2Gui/images/light/msa_save_as.png
- src/corelibs/U2Gui/images/msaed_remove_all_gaps.png → src/corelibs/U2Gui/images/light/msaed_remove_all_gaps.png
- src/corelibs/U2Gui/images/msaed_remove_columns_with_gaps.png → src/corelibs/U2Gui/images/light/msaed_remove_columns_with_gaps.png
- src/corelibs/U2Gui/images/multiline_view.png → src/corelibs/U2Gui/images/light/multiline_view.png
- src/corelibs/U2Gui/images/navi_right.png → src/corelibs/U2Gui/images/light/navi_right.png
- src/corelibs/U2Gui/images/notch.png → src/corelibs/U2Gui/images/light/notch.png
- src/corelibs/U2Gui/images/overview.png → src/corelibs/U2Gui/images/light/overview.png
- src/corelibs/U2Gui/images/paste.png → src/corelibs/U2Gui/images/light/paste.png
- src/corelibs/U2Gui/images/phylip.png → src/corelibs/U2Gui/images/light/phylip.png
- src/corelibs/U2Gui/images/predefined_annotation_groups.png → src/corelibs/U2Gui/images/light/predefined_annotation_groups.png
- src/corelibs/U2Gui/images/printer.png → src/corelibs/U2Gui/images/light/printer.png
- src/corelibs/U2Gui/images/progress.gif → src/corelibs/U2Gui/images/light/progress.gif
- src/corelibs/U2Gui/images/refresh.png → src/corelibs/U2Gui/images/light/refresh.png
- src/corelibs/U2Gui/images/remove_column.png → src/corelibs/U2Gui/images/light/remove_column.png
- src/corelibs/U2Gui/images/reroot.png → src/corelibs/U2Gui/images/light/reroot.png
- src/corelibs/U2Gui/images/ro_biostruct3d.png → src/corelibs/U2Gui/images/light/ro_biostruct3d.png
- src/corelibs/U2Gui/images/ro_dna.png → src/corelibs/U2Gui/images/light/ro_dna.png
- src/corelibs/U2Gui/images/ro_tree.png → src/corelibs/U2Gui/images/light/ro_tree.png
- src/corelibs/U2Gui/images/ruler_coverage.png → src/corelibs/U2Gui/images/light/ruler_coverage.png
- src/corelibs/U2Gui/images/sam.png → src/corelibs/U2Gui/images/light/sam.png
- src/corelibs/U2Gui/images/select_region.png → src/corelibs/U2Gui/images/light/select_region.png
- src/corelibs/U2Gui/images/set_reference.png → src/corelibs/U2Gui/images/light/set_reference.png
- src/corelibs/U2Gui/images/settings2.png → src/corelibs/U2Gui/images/light/settings2.png
- src/corelibs/U2Gui/images/show_all_views.png → src/corelibs/U2Gui/images/light/show_all_views.png
- src/corelibs/U2Gui/images/show_compl.png → src/corelibs/U2Gui/images/light/show_compl.png
- src/corelibs/U2Gui/images/show_trans.png → src/corelibs/U2Gui/images/light/show_trans.png
- src/corelibs/U2Gui/images/ssp_logo.png → src/corelibs/U2Gui/images/light/ssp_logo.png
- src/corelibs/U2Gui/images/sum.png → src/corelibs/U2Gui/images/light/sum.png
- src/corelibs/U2Gui/images/sw.png → src/corelibs/U2Gui/images/light/sw.png
- src/corelibs/U2Gui/images/swap.png → src/corelibs/U2Gui/images/light/swap.png
- src/corelibs/U2Gui/images/sync-msa-off.png → src/corelibs/U2Gui/images/light/sync-msa-off.png
- src/corelibs/U2Gui/images/sync-msa-on.png → src/corelibs/U2Gui/images/light/sync-msa-on.png
- src/corelibs/U2Gui/images/sync_lock.png → src/corelibs/U2Gui/images/light/sync_lock.png
- src/corelibs/U2Gui/images/sync_scales.png → src/corelibs/U2Gui/images/light/sync_scales.png
- src/corelibs/U2Gui/images/text_ab.png → src/corelibs/U2Gui/images/light/text_ab.png
- src/corelibs/U2Gui/images/tree.png → src/corelibs/U2Gui/images/light/tree.png
- src/corelibs/U2Gui/images/tree_layout.png → src/corelibs/U2Gui/images/light/tree_layout.png
- src/corelibs/U2Gui/images/tt_switch.png → src/corelibs/U2Gui/images/light/tt_switch.png
- src/corelibs/U2Gui/images/unload_document.png → src/corelibs/U2Gui/images/light/unload_document.png
- src/corelibs/U2Gui/images/wrap_sequence.png → src/corelibs/U2Gui/images/light/wrap_sequence.png
- src/corelibs/U2Gui/images/zoom_fit.png → src/corelibs/U2Gui/images/light/zoom_fit.png
- src/corelibs/U2Gui/images/zoom_in_tree.png → src/corelibs/U2Gui/images/light/zoom_in_tree.png
- src/corelibs/U2Gui/images/zoom_out_tree.png → src/corelibs/U2Gui/images/light/zoom_out_tree.png
- src/corelibs/U2Gui/images/zoom_view.png → src/corelibs/U2Gui/images/light/zoom_view.png
- src/corelibs/U2Gui/images/lock.png
- − src/corelibs/U2Gui/images/msa_find_next.png
- − src/corelibs/U2Gui/images/msa_find_prev.png
- − src/corelibs/U2Gui/images/page_refresh.png
- − src/corelibs/U2Gui/images/question.png
- − src/corelibs/U2Gui/images/remote_machine_monitor.png
- − src/corelibs/U2Gui/images/remote_machine_ping_no.png
- − src/corelibs/U2Gui/images/remote_machine_ping_waiting_response.png
- − src/corelibs/U2Gui/images/remote_machine_ping_yes.png
- − src/corelibs/U2Gui/images/remove_gobject.png
- − src/corelibs/U2Gui/images/ruler2.png
- − src/corelibs/U2Gui/images/save_as.png
- − src/corelibs/U2Gui/images/settings.png
- − src/corelibs/U2Gui/images/sort_ascending.png
- − src/corelibs/U2Gui/images/table.png
- − src/corelibs/U2Gui/images/table_add.png
- − src/corelibs/U2Gui/images/todo.png
- − src/corelibs/U2Gui/images/uindexview_select_field.png
- − src/corelibs/U2Gui/images/zoom_1_1.png
- − src/corelibs/U2Gui/images/zoom_rows.png
- src/corelibs/U2Core/src/tasks/AddDocumentTask.cpp → src/corelibs/U2Gui/src/AddDocumentTask.cpp
- src/corelibs/U2Core/src/tasks/AddDocumentTask.h → src/corelibs/U2Gui/src/AddDocumentTask.h
- src/corelibs/U2Gui/src/AppSettingsGUI.h
- src/corelibs/U2Gui/src/ComboBoxWithCheckBoxes.cpp
- src/corelibs/U2Gui/src/ComboBoxWithCheckBoxes.h
- src/corelibs/U2Gui/src/MainWindow.cpp
- src/corelibs/U2Gui/src/MainWindow.h
- src/corelibs/U2Core/src/tasks/ModifySequenceObjectTask.cpp → src/corelibs/U2Gui/src/ModifySequenceObjectTask.cpp
- src/corelibs/U2Core/src/tasks/ModifySequenceObjectTask.h → src/corelibs/U2Gui/src/ModifySequenceObjectTask.h
- src/corelibs/U2Gui/src/Notification.cpp
- src/corelibs/U2Gui/src/Notification.h
- src/corelibs/U2Gui/src/NotificationWidget.cpp
- src/corelibs/U2Gui/src/NotificationWidget.h
- src/corelibs/U2Gui/src/NotificationsTypes.h
- src/corelibs/U2Gui/src/ObjectViewModel.cpp
- src/corelibs/U2Gui/src/ObjectViewModel.h
- src/corelibs/U2Gui/src/ObjectViewTasks.cpp
- src/corelibs/U2Gui/src/ObjectViewTasks.h
- src/corelibs/U2Gui/src/OpenViewTask.cpp
- src/corelibs/U2Gui/src/OpenViewTask.h
- src/corelibs/U2Gui/src/PasteController.cpp
- src/corelibs/U2Gui/src/PasteController.h
- src/corelibs/U2Gui/src/PluginViewer.h
- src/corelibs/U2Gui/src/ProjectParsing.cpp
- src/corelibs/U2Gui/src/ProjectParsing.h
- src/corelibs/U2Gui/src/ProjectView.h
- src/corelibs/U2Gui/src/ReloadDocumentsTask.cpp
- src/corelibs/U2Gui/src/ReloadDocumentsTask.h
- src/corelibs/U2Core/src/tasks/RemoveDocumentTask.cpp → src/corelibs/U2Gui/src/RemoveDocumentTask.cpp
- src/corelibs/U2Core/src/tasks/RemoveDocumentTask.h → src/corelibs/U2Gui/src/RemoveDocumentTask.h
- + src/corelibs/U2Gui/src/SaveMultipleDocumentTask.cpp
- + src/corelibs/U2Gui/src/SaveMultipleDocumentTask.h
- src/corelibs/U2Gui/src/ToolsMenu.cpp
- src/corelibs/U2Gui/src/ToolsMenu.h
- src/corelibs/U2Gui/src/U2SavableWidget.cpp
- src/corelibs/U2Gui/src/U2SavableWidget.h
- src/corelibs/U2Gui/src/U2WidgetStateStorage.cpp
- src/corelibs/U2Gui/src/U2WidgetStateStorage.h
- src/corelibs/U2Gui/src/UnloadDocumentTask.cpp
- src/corelibs/U2Gui/src/UnloadDocumentTask.h
- src/corelibs/U2Gui/src/WelcomePageAction.cpp
- src/corelibs/U2Gui/src/WelcomePageAction.h
- src/corelibs/U2Gui/src/options_panel/GroupHeaderImageWidget.cpp
- src/corelibs/U2Gui/src/options_panel/GroupHeaderImageWidget.h
- src/corelibs/U2Gui/src/options_panel/GroupOptionsWidget.cpp
- src/corelibs/U2Gui/src/options_panel/GroupOptionsWidget.h
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactory.cpp
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactory.h
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactoryRegistry.cpp
- src/corelibs/U2Gui/src/options_panel/OPWidgetFactoryRegistry.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanel.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanel.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanelGroup.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanelGroup.h
- src/corelibs/U2Gui/src/options_panel/OptionsPanelWidget.cpp
- src/corelibs/U2Gui/src/options_panel/OptionsPanelWidget.h
- src/corelibs/U2Gui/src/options_panel/PrimerLineEdit.cpp
- src/corelibs/U2Gui/src/options_panel/PrimerLineEdit.h
- src/corelibs/U2Gui/src/options_panel/ShowHideSubgroupWidget.cpp
- src/corelibs/U2Gui/src/options_panel/ShowHideSubgroupWidget.h
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogController.h
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogImpl.cpp
- src/corelibs/U2Gui/src/util/AddNewDocumentDialogImpl.h
- src/corelibs/U2Gui/src/util/AuthenticationDialog.cpp
- src/corelibs/U2Gui/src/util/AuthenticationDialog.h
- src/corelibs/U2Gui/src/util/AuthenticationWidget.cpp
- src/corelibs/U2Gui/src/util/AuthenticationWidget.h
- src/corelibs/U2Gui/src/util/BreakpointConditionEditDialog.cpp
- src/corelibs/U2Gui/src/util/BreakpointConditionEditDialog.h
- src/corelibs/U2Gui/src/util/CreateAnnotationDialog.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationDialog.h
- src/corelibs/U2Gui/src/util/CreateAnnotationFullWidget.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationFullWidget.h
- src/corelibs/U2Gui/src/util/CreateAnnotationFullWidget.ui
- src/corelibs/U2Gui/src/util/CreateAnnotationNormalWidget.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationNormalWidget.h
- src/corelibs/U2Gui/src/util/CreateAnnotationNormalWidget.ui
- src/corelibs/U2Gui/src/util/CreateAnnotationOptionsPanelWidget.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationOptionsPanelWidget.h
- src/corelibs/U2Gui/src/util/CreateAnnotationWidget.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationWidget.h
- src/corelibs/U2Gui/src/util/CreateAnnotationWidgetController.cpp
- src/corelibs/U2Gui/src/util/CreateAnnotationWidgetController.h
- src/corelibs/U2Gui/src/util/CreateDocumentFromTextDialogController.cpp
- src/corelibs/U2Gui/src/util/CreateDocumentFromTextDialogController.h
- src/corelibs/U2Gui/src/util/CreateObjectRelationDialogController.cpp
- src/corelibs/U2Gui/src/util/CreateObjectRelationDialogController.h
- src/corelibs/U2Gui/src/util/CreateSequenceFromTextAndOpenViewTask.cpp
- src/corelibs/U2Gui/src/util/CreateSequenceFromTextAndOpenViewTask.h
- src/corelibs/U2Gui/src/util/CredentialsAskerGui.cpp
- src/corelibs/U2Gui/src/util/CredentialsAskerGui.h
- src/corelibs/U2Gui/src/util/DialogUtils.cpp
- src/corelibs/U2Gui/src/util/DialogUtils.h
- src/corelibs/U2Gui/src/util/DocumentFormatComboboxController.cpp
- src/corelibs/U2Gui/src/util/DocumentFormatComboboxController.h
- src/corelibs/U2Gui/src/util/DownloadRemoteFileDialog.cpp
- src/corelibs/U2Gui/src/util/DownloadRemoteFileDialog.h
- src/corelibs/U2Gui/src/util/EditQualifierDialog.cpp
- src/corelibs/U2Gui/src/util/EditQualifierDialog.h
- src/corelibs/U2Gui/src/util/EditSequenceDialogController.cpp
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- src/corelibs/U2Gui/src/util/TreeWidgetUtils.cpp
- src/corelibs/U2Gui/src/util/TreeWidgetUtils.h
- src/corelibs/U2Gui/src/util/U2FileDialog.cpp
- src/corelibs/U2Gui/src/util/U2FileDialog.h
- + src/corelibs/U2Gui/src/util/U2FileDialogPolicy.cpp
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- src/corelibs/U2Gui/src/util/shared_db/EditConnectionDialog.cpp
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- src/corelibs/U2Gui/src/util/shared_db/ItemToImportEditDialog.cpp
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- src/corelibs/U2Lang/src/library/script/ActorContext.h
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- src/corelibs/U2Lang/src/library/script/ScriptLibrary.h
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- src/corelibs/U2Lang/src/model/actor/ActorPrototype.h
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- src/corelibs/U2Lang/src/model/actor/ActorValidator.h
- src/corelibs/U2Lang/src/model/url_attribute/Dataset.cpp
- src/corelibs/U2Lang/src/model/url_attribute/Dataset.h
- src/corelibs/U2Lang/src/model/url_attribute/DbFolderScanner.cpp
- src/corelibs/U2Lang/src/model/url_attribute/DbFolderScanner.h
- src/corelibs/U2Lang/src/model/url_attribute/SharedDbUrlUtils.cpp
- src/corelibs/U2Lang/src/model/url_attribute/SharedDbUrlUtils.h
- src/corelibs/U2Lang/src/model/url_attribute/URLAttribute.cpp
- src/corelibs/U2Lang/src/model/url_attribute/URLAttribute.h
- src/corelibs/U2Lang/src/model/url_attribute/URLContainer.cpp
- src/corelibs/U2Lang/src/model/url_attribute/URLContainer.h
- src/corelibs/U2Lang/src/model/wizard/ElementSelectorWidget.cpp
- src/corelibs/U2Lang/src/model/wizard/ElementSelectorWidget.h
- src/corelibs/U2Lang/src/model/wizard/IdMapping.cpp
- src/corelibs/U2Lang/src/model/wizard/IdMapping.h
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- src/corelibs/U2Lang/src/model/wizard/PortMapping.h
- src/corelibs/U2Lang/src/model/wizard/SelectorValue.cpp
- src/corelibs/U2Lang/src/model/wizard/SelectorValue.h
- src/corelibs/U2Lang/src/model/wizard/SlotMapping.cpp
- src/corelibs/U2Lang/src/model/wizard/SlotMapping.h
- src/corelibs/U2Lang/src/model/wizard/Variable.cpp
- src/corelibs/U2Lang/src/model/wizard/Variable.h
- src/corelibs/U2Lang/src/model/wizard/Wizard.cpp
- src/corelibs/U2Lang/src/model/wizard/Wizard.h
- src/corelibs/U2Lang/src/model/wizard/WizardPage.cpp
- src/corelibs/U2Lang/src/model/wizard/WizardPage.h
- src/corelibs/U2Lang/src/model/wizard/WizardWidget.cpp
- src/corelibs/U2Lang/src/model/wizard/WizardWidget.h
- src/corelibs/U2Lang/src/model/wizard/WizardWidgetVisitor.h
- src/corelibs/U2Lang/src/run/WorkflowMonitor.cpp
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- src/corelibs/U2Lang/src/support/AttributeInfo.cpp
- src/corelibs/U2Lang/src/support/AttributeInfo.h
- src/corelibs/U2Lang/src/support/BaseBreakpointHitCounter.cpp
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- src/corelibs/U2Lang/src/support/BreakpointMultipleHitCounter.h
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- src/corelibs/U2Lang/src/support/ElapsedTimeUpdater.cpp
- src/corelibs/U2Lang/src/support/ElapsedTimeUpdater.h
- src/corelibs/U2Lang/src/support/IntegralBusUtils.cpp
- src/corelibs/U2Lang/src/support/IntegralBusUtils.h
- src/corelibs/U2Lang/src/support/MapDatatypeEditor.cpp
- src/corelibs/U2Lang/src/support/MapDatatypeEditor.h
- src/corelibs/U2Lang/src/support/MarkerUtils.cpp
- src/corelibs/U2Lang/src/support/MarkerUtils.h
- src/corelibs/U2Lang/src/support/NoFailTaskWrapper.cpp
- src/corelibs/U2Lang/src/support/NoFailTaskWrapper.h
- src/corelibs/U2Lang/src/support/SchemaSerializer.cpp
- src/corelibs/U2Lang/src/support/SchemaSerializer.h
- src/corelibs/U2Lang/src/support/ScriptWorkerSerializer.cpp
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- src/corelibs/U2View/src/ov_assembly/AssemblyCoverageGraph.h
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- src/corelibs/U2View/src/ov_assembly/ExportConsensusDialog.cpp
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- src/corelibs/U2View/src/ov_assembly/ZoomableAssemblyOverview.h
- src/corelibs/U2View/src/ov_mca/MaConsensusMismatchController.cpp
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- src/corelibs/U2View/src/ov_mca/McaConsensusAreaRenderer.cpp
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- src/corelibs/U2View/src/ov_mca/McaEditor.cpp
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- src/corelibs/U2View/src/ov_mca/SequenceWithChromatogramAreaRenderer.cpp
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- src/corelibs/U2View/src/ov_mca/general_tab/McaGeneralTab.cpp
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- src/corelibs/U2View/src/ov_mca/general_tab/McaGeneralTabFactory.h
- src/corelibs/U2View/src/ov_mca/overview/MaSangerOverview.cpp
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- src/corelibs/U2View/src/ov_mca/reads_tab/McaAlternativeMutationsWidget.cpp
- src/corelibs/U2View/src/ov_mca/reads_tab/McaAlternativeMutationsWidget.h
- src/corelibs/U2View/src/ov_mca/reads_tab/McaReadsTabFactory.cpp
- src/corelibs/U2View/src/ov_mca/reads_tab/McaReadsTabFactory.h
- src/corelibs/U2View/src/ov_msa/AlignmentLogo.cpp
- src/corelibs/U2View/src/ov_msa/AlignmentLogo.h
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- src/corelibs/U2View/src/ov_msa/BaseWidthController.h
- src/corelibs/U2View/src/ov_msa/ColorSchemaDialogController.cpp
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- src/corelibs/U2View/src/ov_msa/ColorSchemaSettingsController.cpp
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- src/corelibs/U2View/src/ov_msa/DrawHelper.h
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- src/corelibs/U2View/src/ov_msa/MaAmbiguousCharactersController.cpp
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- src/corelibs/U2View/src/ov_msa/MaCollapseModel.cpp
- src/corelibs/U2View/src/ov_msa/MaCollapseModel.h
- src/corelibs/U2View/src/ov_msa/MaConsensusAreaRenderer.cpp
- src/corelibs/U2View/src/ov_msa/MaConsensusAreaRenderer.h
- src/corelibs/U2View/src/ov_msa/MaEditor.cpp
- src/corelibs/U2View/src/ov_msa/MaEditor.h
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- src/corelibs/U2View/src/ov_msa/MaEditorConsensusAreaSettings.cpp
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- src/corelibs/U2View/src/ov_msa/MaEditorContext.cpp
- src/corelibs/U2View/src/ov_msa/MaEditorContext.h
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- src/corelibs/U2View/src/ov_msa/MaEditorSelection.cpp
- src/corelibs/U2View/src/ov_msa/MaEditorSelection.h
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- src/corelibs/U2View/src/ov_msa/MaEditorState.h
- src/corelibs/U2View/src/ov_msa/MaEditorStatusBar.cpp
- src/corelibs/U2View/src/ov_msa/MaEditorStatusBar.h
- src/corelibs/U2View/src/ov_msa/MaEditorTasks.cpp
- src/corelibs/U2View/src/ov_msa/MaEditorTasks.h
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- src/corelibs/U2View/src/ov_msa/MaEditorUtils.h
- src/corelibs/U2View/src/ov_msa/MaEditorWgt.cpp
- src/corelibs/U2View/src/ov_msa/MaEditorWgt.h
- src/corelibs/U2View/src/ov_msa/MsaEditor.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditor.h
- src/corelibs/U2View/src/ov_msa/MsaEditorConsensusArea.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorConsensusArea.h
- src/corelibs/U2View/src/ov_msa/MsaEditorConsensusCache.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorConsensusCache.h
- src/corelibs/U2View/src/ov_msa/MsaEditorMultilineWgt.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorNameList.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorNameList.h
- src/corelibs/U2View/src/ov_msa/MsaEditorOffsetsView.cpp
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- src/corelibs/U2View/src/ov_msa/MsaEditorOverviewArea.h
- src/corelibs/U2View/src/ov_msa/MsaEditorSequenceArea.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorSequenceArea.h
- src/corelibs/U2View/src/ov_msa/MsaEditorSimilarityColumn.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorSimilarityColumn.h
- src/corelibs/U2View/src/ov_msa/MsaEditorStatusBar.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorStatusBar.h
- src/corelibs/U2View/src/ov_msa/MsaEditorUserModStepController.cpp
- src/corelibs/U2View/src/ov_msa/MsaEditorUserModStepController.h
- src/corelibs/U2View/src/ov_msa/MsaEditorWgt.cpp
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- src/corelibs/U2View/src/ov_msa/MsaOpSavableTab.cpp
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- src/corelibs/U2View/src/ov_msa/MsaRowHeightController.cpp
- src/corelibs/U2View/src/ov_msa/MsaRowHeightController.h
- src/corelibs/U2View/src/ov_msa/MsaSelectSubalignmentDialog.cpp
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- src/corelibs/U2View/src/ov_msa/RowHeightController.cpp
- src/corelibs/U2View/src/ov_msa/RowHeightController.h
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- src/corelibs/U2View/src/ov_msa/ScrollController.h
- src/corelibs/U2View/src/ov_msa/SequenceAreaRenderer.cpp
- src/corelibs/U2View/src/ov_msa/SequenceAreaRenderer.h
- src/corelibs/U2View/src/ov_msa/SequenceSelectorWidget.ui
- src/corelibs/U2View/src/ov_msa/SequenceSelectorWidgetController.cpp
- src/corelibs/U2View/src/ov_msa/SequenceSelectorWidgetController.h
- src/corelibs/U2View/src/ov_msa/align_to_alignment/AlignSequencesToAlignmentSupport.cpp
- src/corelibs/U2View/src/ov_msa/align_to_alignment/AlignSequencesToAlignmentSupport.h
- src/corelibs/U2View/src/ov_msa/align_to_alignment/AlignSequencesToAlignmentTask.cpp
- src/corelibs/U2View/src/ov_msa/align_to_alignment/AlignSequencesToAlignmentTask.h
- src/corelibs/U2View/src/ov_msa/align_to_alignment/RealignSequencesInAlignmentTask.cpp
- src/corelibs/U2View/src/ov_msa/align_to_alignment/RealignSequencesInAlignmentTask.h
- src/corelibs/U2View/src/ov_msa/clipboard/SubalignmentToClipboardTask.cpp
- src/corelibs/U2View/src/ov_msa/clipboard/SubalignmentToClipboardTask.h
- src/corelibs/U2View/src/ov_msa/exclude_list/MsaExcludeList.cpp
- src/corelibs/U2View/src/ov_msa/exclude_list/MsaExcludeList.h
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusTabFactory.h
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusWidget.cpp
- src/corelibs/U2View/src/ov_msa/export_consensus/MaExportConsensusWidget.h
- src/corelibs/U2View/src/ov_msa/export_image/MsaImageExportTask.cpp
- src/corelibs/U2View/src/ov_msa/export_image/MsaImageExportTask.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaTask.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaTask.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidget.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidget.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetFactory.h
- src/corelibs/U2View/src/ov_msa/find_pattern/FindPatternMsaWidgetSavableTab.cpp
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- src/corelibs/U2View/src/ov_msa/general_tab/GeneralTabOptionsPanelWidget.ui
- src/corelibs/U2View/src/ov_msa/general_tab/MaConsensusModeWidget.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MaConsensusModeWidget.h
- src/corelibs/U2View/src/ov_msa/general_tab/MaConsensusModeWidget.ui
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTab.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTab.h
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/general_tab/MsaGeneralTabFactory.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingSavableTab.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingSavableTab.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTab.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTab.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTabFactory.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaHighlightingTabFactory.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemeComboBoxController.h
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemesMenuBuilder.cpp
- src/corelibs/U2View/src/ov_msa/highlighting/MsaSchemesMenuBuilder.h
- src/corelibs/U2View/src/ov_msa/move_to_object/MoveToObjectMaController.cpp
- src/corelibs/U2View/src/ov_msa/move_to_object/MoveToObjectMaController.h
- src/corelibs/U2View/src/ov_msa/overview/MaEditorOverviewArea.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaEditorOverviewArea.h
- src/corelibs/U2View/src/ov_msa/overview/MaGraphCalculationTask.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaGraphCalculationTask.h
- src/corelibs/U2View/src/ov_msa/overview/MaGraphOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaGraphOverview.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverview.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewContextMenu.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewContextMenu.h
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewImageExportTask.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaOverviewImageExportTask.h
- src/corelibs/U2View/src/ov_msa/overview/MaSimpleOverview.cpp
- src/corelibs/U2View/src/ov_msa/overview/MaSimpleOverview.h
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlign.cpp
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlign.h
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlignFactory.cpp
- src/corelibs/U2View/src/ov_msa/pairwise_alignment/PairAlignFactory.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorMultiTreeViewer.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorMultiTreeViewer.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeManager.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeManager.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeTabArea.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeTabArea.h
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeViewer.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree/MsaEditorTreeViewer.h
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidget.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidget.h
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/phy_tree_tab/TreeOptionsWidgetFactory.h
- src/corelibs/U2View/src/ov_msa/ref_seq_widget/RefSeqCommonWidget.cpp
- src/corelibs/U2View/src/ov_msa/ref_seq_widget/RefSeqCommonWidget.h
- src/corelibs/U2View/src/ov_msa/sort/MsaEditorSortSequencesWidget.cpp
- src/corelibs/U2View/src/ov_msa/sort/MsaEditorSortSequencesWidget.h
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidget.cpp
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidget.h
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidgetFactory.cpp
- src/corelibs/U2View/src/ov_msa/statistics/SeqStatisticsWidgetFactory.h
- src/corelibs/U2View/src/ov_msa/statistics/SimilarityStatisticsSettings.h
- src/corelibs/U2View/src/ov_phyltree/TreeSettings.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewer.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewer.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerFactory.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerFactory.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerState.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerState.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerTasks.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerTasks.h
- src/corelibs/U2View/src/ov_phyltree/TreeViewerUtils.cpp
- src/corelibs/U2View/src/ov_phyltree/TreeViewerUtils.h
- src/corelibs/U2View/src/ov_phyltree/item/TvBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvCircularBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvCircularBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvNodeItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvNodeItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvRectangularBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvRectangularBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvTextItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvTextItem.h
- src/corelibs/U2View/src/ov_phyltree/item/TvUnrootedBranchItem.cpp
- src/corelibs/U2View/src/ov_phyltree/item/TvUnrootedBranchItem.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvCircularLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvCircularLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvRectangularLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvRectangularLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_phyltree/layout/TvUnrootedLayoutAlgorithm.cpp
- src/corelibs/U2View/src/ov_phyltree/layout/TvUnrootedLayoutAlgorithm.h
- src/corelibs/U2View/src/ov_sequence/ADVAnnotationCreation.cpp
- src/corelibs/U2View/src/ov_sequence/ADVAnnotationCreation.h
- src/corelibs/U2View/src/ov_sequence/ADVClipboard.cpp
- src/corelibs/U2View/src/ov_sequence/ADVClipboard.h
- src/corelibs/U2View/src/ov_sequence/ADVConstants.h
- src/corelibs/U2View/src/ov_sequence/ADVGraphModel.cpp
- src/corelibs/U2View/src/ov_sequence/ADVGraphModel.h
- src/corelibs/U2View/src/ov_sequence/ADVSequenceObjectContext.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSequenceObjectContext.h
- src/corelibs/U2View/src/ov_sequence/ADVSequenceWidget.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSequenceWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSplitWidget.h
- src/corelibs/U2View/src/ov_sequence/ADVSyncViewManager.cpp
- src/corelibs/U2View/src/ov_sequence/ADVSyncViewManager.h
- src/corelibs/U2View/src/ov_sequence/ADVUtils.cpp
- src/corelibs/U2View/src/ov_sequence/ADVUtils.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAView.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAView.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewFactory.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewFactory.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewState.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewState.h
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewTasks.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotatedDNAViewTasks.h
- src/corelibs/U2View/src/ov_sequence/AnnotationsTreeView.cpp
- src/corelibs/U2View/src/ov_sequence/AnnotationsTreeView.h
- src/corelibs/U2View/src/ov_sequence/AutoAnnotationUtils.cpp
- src/corelibs/U2View/src/ov_sequence/AutoAnnotationUtils.h
- src/corelibs/U2View/src/ov_sequence/CreateRulerDialogController.cpp
- src/corelibs/U2View/src/ov_sequence/CreateRulerDialogController.h
- src/corelibs/U2View/src/ov_sequence/DetView.cpp
- src/corelibs/U2View/src/ov_sequence/DetView.h
- src/corelibs/U2View/src/ov_sequence/DetViewSequenceEditor.cpp
- src/corelibs/U2View/src/ov_sequence/DetViewSequenceEditor.h
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphView.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphView.h
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphViewWithFactory.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceGraphViewWithFactory.h
- src/corelibs/U2View/src/ov_sequence/GSequenceLineView.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceLineView.h
- src/corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.cpp
- src/corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h
- src/corelibs/U2View/src/ov_sequence/GraphLabelModel.cpp
- src/corelibs/U2View/src/ov_sequence/GraphLabelModel.h
- src/corelibs/U2View/src/ov_sequence/GraphMenu.cpp
- src/corelibs/U2View/src/ov_sequence/GraphMenu.h
- src/corelibs/U2View/src/ov_sequence/GraphSettingsDialog.cpp
- src/corelibs/U2View/src/ov_sequence/GraphSettingsDialog.h
- src/corelibs/U2View/src/ov_sequence/Overview.cpp
- src/corelibs/U2View/src/ov_sequence/Overview.h
- src/corelibs/U2View/src/ov_sequence/PanView.cpp
- src/corelibs/U2View/src/ov_sequence/PanView.h
- src/corelibs/U2View/src/ov_sequence/PanViewRows.cpp
- src/corelibs/U2View/src/ov_sequence/PanViewRows.h
- src/corelibs/U2View/src/ov_sequence/SaveGraphCutoffsDialogController.cpp
- src/corelibs/U2View/src/ov_sequence/SaveGraphCutoffsDialogController.h
- src/corelibs/U2View/src/ov_sequence/SearchQualifierDialog.cpp
- src/corelibs/U2View/src/ov_sequence/SearchQualifierDialog.h
- src/corelibs/U2View/src/ov_sequence/SequenceObjectContext.cpp
- src/corelibs/U2View/src/ov_sequence/SequenceObjectContext.h
- src/corelibs/U2View/src/ov_sequence/WindowStepSelectorWidget.cpp
- src/corelibs/U2View/src/ov_sequence/WindowStepSelectorWidget.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightSettings.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightSettings.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTree.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTree.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTreeItem.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightTreeItem.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidget.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidget.h
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidgetFactory.cpp
- src/corelibs/U2View/src/ov_sequence/annot_highlight/AnnotHighlightWidgetFactory.h
- src/corelibs/U2View/src/ov_sequence/codon_table/CodonTable.cpp
- src/corelibs/U2View/src/ov_sequence/codon_table/CodonTable.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternTask.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternTask.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidget.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidget.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetFactory.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetFactory.h
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetSavableTab.cpp
- src/corelibs/U2View/src/ov_sequence/find_pattern/FindPatternWidgetSavableTab.h
- src/corelibs/U2View/src/ov_sequence/image_export/ExportImagePainter.h
- src/corelibs/U2View/src/ov_sequence/image_export/SequenceExportSettingsWidget.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SequenceExportSettingsWidget.h
- src/corelibs/U2View/src/ov_sequence/image_export/SequencePainter.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SequencePainter.h
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportController.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportController.h
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportTask.cpp
- src/corelibs/U2View/src/ov_sequence/image_export/SingleSequenceImageExportTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/CharOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/CharOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/CodonOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/CodonOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/DNAStatisticsTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/DNAStatisticsTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/DinuclOccurTask.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/DinuclOccurTask.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfo.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfo.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfoFactory.cpp
- src/corelibs/U2View/src/ov_sequence/sequence_info/SequenceInfoFactory.h
- src/corelibs/U2View/src/ov_sequence/sequence_info/StatisticsCache.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewMultiLineRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewMultiLineRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewSingleLineRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/DetViewSingleLineRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/PanViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/PanViewRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.h
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewRenderer.cpp
- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewRenderer.h
- src/corelibs/U2View/src/ov_text/SimpleTextObjectView.cpp
- src/corelibs/U2View/src/ov_text/SimpleTextObjectView.h
- src/corelibs/U2View/src/ov_text/SimpleTextObjectViewTasks.cpp
- src/corelibs/U2View/src/ov_text/SimpleTextObjectViewTasks.h
- src/corelibs/U2View/src/phyltree/BaseSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/BaseSettingsDialog.h
- src/corelibs/U2View/src/phyltree/CreatePhyTreeDialogController.cpp
- src/corelibs/U2View/src/phyltree/CreatePhyTreeDialogController.h
- src/corelibs/U2View/src/phyltree/CreatePhyTreeWidget.cpp
- src/corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h
- src/corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.cpp
- src/corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h
- src/corelibs/U2View/src/phyltree/TextSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/TextSettingsDialog.h
- src/corelibs/U2View/src/phyltree/TreeSettingsDialog.cpp
- src/corelibs/U2View/src/phyltree/TreeSettingsDialog.h
- src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/BuildIndexDialog.h
- src/corelibs/U2View/src/util_dna_assembly/ConvertAssemblyToSamDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/ConvertAssemblyToSamDialog.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyDialog.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyGUIExtension.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyGUIExtension.h
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyUtils.cpp
- src/corelibs/U2View/src/util_dna_assembly/DnaAssemblyUtils.h
- src/corelibs/U2View/src/util_dna_assembly/GenomeAssemblyDialog.cpp
- src/corelibs/U2View/src/util_dna_assembly/GenomeAssemblyDialog.h
- + src/corelibs/U2View/src/util_mca_align/McaColors.cpp
- + src/corelibs/U2View/src/util_mca_align/McaColors.h
- src/corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.cpp
- src/corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.cpp
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructDialog.h
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.cpp
- src/corelibs/U2View/src/util_sec_struct_predict/SecStructPredictUtils.h
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.cpp
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h
- src/corelibs/U2View/src/util_smith_waterman/SmithWatermanDialogImpl.h
- src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.cpp
- src/corelibs/U2View/src/util_smith_waterman/SubstMatrixDialog.h
- src/corelibs/U2View/transl/russian.ts
- src/corelibs/U2View/transl/turkish.ts
- − src/include/U2Core/AddDocumentTask.h
- − src/include/U2Core/ModifySequenceObjectTask.h
- − src/include/U2Core/RemoveDocumentTask.h
- − src/include/U2Core/Theme.h
- + src/include/U2Core/U2AssemblyDbiUtils.h
- + src/include/U2Designer/PrompterBase.h
- + src/include/U2Gui/AddDocumentTask.h
- + src/include/U2Gui/ModifySequenceObjectTask.h
- + src/include/U2Gui/RemoveDocumentTask.h
- + src/include/U2Gui/SaveMultipleDocumentTask.h
- + src/include/U2Gui/Theme.h
- + src/include/U2Gui/U2FileDialogPolicy.h
- + src/include/U2Lang/ActorDocument.h
- + src/include/U2View/McaColors.h
- − src/libs_3rdparty/QSpec/QSpec.pri
- − src/libs_3rdparty/QSpec/QSpec.pro
- src/libs_3rdparty/QSpec/src/GTGlobals.cpp
- src/libs_3rdparty/QSpec/src/GTGlobals.h
- src/libs_3rdparty/QSpec/src/base_dialogs/ColorDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/ColorDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/DefaultDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/DefaultDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/FontDialogFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/FontDialogFiller.h
- src/libs_3rdparty/QSpec/src/base_dialogs/MessageBoxFiller.cpp
- src/libs_3rdparty/QSpec/src/base_dialogs/MessageBoxFiller.h
- src/libs_3rdparty/QSpec/src/core/CustomScenario.cpp
- src/libs_3rdparty/QSpec/src/core/CustomScenario.h
- src/libs_3rdparty/QSpec/src/core/GUITestOpStatus.h
- src/libs_3rdparty/QSpec/src/core/MainThreadRunnable.cpp
- src/libs_3rdparty/QSpec/src/core/MainThreadRunnable.h
- src/libs_3rdparty/QSpec/src/core/MainThreadTimer.cpp
- src/libs_3rdparty/QSpec/src/core/MainThreadTimer.h
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriver.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriver.h
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverLinux.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverMac.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTKeyboardDriverWindows.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriver.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriver.h
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverLinux.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverMac.cpp
- src/libs_3rdparty/QSpec/src/drivers/GTMouseDriverWindows.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTAction.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTAction.h
- src/libs_3rdparty/QSpec/src/primitives/GTCheckBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTCheckBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTComboBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTComboBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTDoubleSpinBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTGroupBox.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTGroupBox.h
- src/libs_3rdparty/QSpec/src/primitives/GTLabel.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTLabel.h
- src/libs_3rdparty/QSpec/src/primitives/GTLineEdit.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTLineEdit.h
- src/libs_3rdparty/QSpec/src/primitives/GTListWidget.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTListWidget.h
- src/libs_3rdparty/QSpec/src/primitives/GTMainWindow.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTMainWindow.h
- src/libs_3rdparty/QSpec/src/primitives/GTMenu.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTMenu.h
- src/libs_3rdparty/QSpec/src/primitives/GTMenuBar.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTMenuBar.h
- src/libs_3rdparty/QSpec/src/primitives/GTPlainTextEdit.cpp
- src/libs_3rdparty/QSpec/src/primitives/GTPlainTextEdit.h
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- src/libs_3rdparty/QSpec/src/primitives/GTRadioButton.h
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- src/plugins/GUITestBase/src/tests/common_scenarios/annotations/edit/GTTestsAnnotationsEdit.cpp
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- src/plugins/GUITestBase/src/tests/common_scenarios/annotations/qualifiers/GTTestsAnnotationsQualifiers.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/annotations/qualifiers/GTTestsAnnotationsQualifiers.h
- src/plugins/GUITestBase/src/tests/common_scenarios/annotations_import/GTTestsAnnotationsImport.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/annotations_import/GTTestsAnnotationsImport.h
- src/plugins/GUITestBase/src/tests/common_scenarios/circular_view/GTTestsCvGeneral.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/circular_view/GTTestsCvGeneral.h
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- src/plugins/GUITestBase/src/tests/common_scenarios/create_shortcut/GTTestsCreateShortcut.h
- + src/plugins/GUITestBase/src/tests/common_scenarios/dark_theme/GTTestsDarkTheme.cpp
- + src/plugins/GUITestBase/src/tests/common_scenarios/dark_theme/GTTestsDarkTheme.h
- src/plugins/GUITestBase/src/tests/common_scenarios/document_from_text/GTTestsDocumentFromText.cpp
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- src/plugins/GUITestBase/src/tests/common_scenarios/dp_view/GTTestsDpView.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/dp_view/GTTestsDpView.h
- src/plugins/GUITestBase/src/tests/common_scenarios/external_tools/mfold/GTTestsMfold.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/external_tools/mfold/GTTestsMfold.h
- src/plugins/GUITestBase/src/tests/common_scenarios/fasttree/GTTestsFastTree.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/fasttree/GTTestsFastTree.h
- src/plugins/GUITestBase/src/tests/common_scenarios/genecut/GTTestsGeneCut.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/genecut/GTTestsGeneCut.h
- src/plugins/GUITestBase/src/tests/common_scenarios/iqtree/GTTestsIQTree.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/iqtree/GTTestsIQTree.h
- src/plugins/GUITestBase/src/tests/common_scenarios/mca_editor/GTTestsMcaEditor.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/mca_editor/GTTestsMcaEditor.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/GTTestsMsaEditor.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/GTTestsMsaEditor.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/align/GTTestsAlignSequenceToMsa.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/align/GTTestsAlignSequenceToMsa.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/colors/GTTestsMSAEditorColors.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/colors/GTTestsMSAEditorColors.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/consensus/GTTestsMSAEditorConsensus.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/consensus/GTTestsMSAEditorConsensus.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/edit/GTTestsMSAEditorEdit.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/edit/GTTestsMSAEditorEdit.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/exclude_list/GTTestsMsaExcludeList.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/exclude_list/GTTestsMsaExcludeList.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/GTTestsMSAMultiline.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/GTTestsMSAMultiline.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/colors/GTTestsColorsMSAMultiline.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/colors/GTTestsColorsMSAMultiline.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/options/GTTestsOptionPanelMSAMultiline.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/options/GTTestsOptionPanelMSAMultiline.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/replace_character/GTTestsMSAEditorReplaceCharacter.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/replace_character/GTTestsMSAEditorReplaceCharacter.h
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/tree/GTTestsMSAEditorTree.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/tree/GTTestsMSAEditorTree.h
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/GTTestsOptionPanel.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/GTTestsOptionPanel.h
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/msa/GTTestsOptionPanelMSA.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/msa/GTTestsOptionPanelMSA.h
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/sequence_view/GTTestsOptionPanelSequenceView.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/options_panel/sequence_view/GTTestsOptionPanelSequenceView.h
- src/plugins/GUITestBase/src/tests/common_scenarios/pcr/GTTestsInSilicoPcr.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/pcr/GTTestsInSilicoPcr.h
- src/plugins/GUITestBase/src/tests/common_scenarios/pcr/GTTestsPrimerLibrary.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/pcr/GTTestsPrimerLibrary.h
- src/plugins/GUITestBase/src/tests/common_scenarios/phyml/GTTestsCommonScenariosPhyml.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/phyml/GTTestsCommonScenariosPhyml.h
- src/plugins/GUITestBase/src/tests/common_scenarios/primer3/GTTestsCommonScenariosPrimer3.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/primer3/GTTestsCommonScenariosPrimer3.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/GTTestsProject.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/GTTestsProject.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/anonymous_project/GTTestsProjectAnonymousProject.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/anonymous_project/GTTestsProjectAnonymousProject.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/bookmarks/GTTestsBookmarks.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/bookmarks/GTTestsBookmarks.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/document_modifying/GTTestsProjectDocumentModifying.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/document_modifying/GTTestsProjectDocumentModifying.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/multiple_docs/GTTestsProjectMultipleDocs.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/multiple_docs/GTTestsProjectMultipleDocs.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/project_filtering/GTTestsProjectFiltering.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/project_filtering/GTTestsProjectFiltering.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/relations/GTTestsProjectRelations.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/relations/GTTestsProjectRelations.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/remote_request/GTTestsProjectRemoteRequest.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/remote_request/GTTestsProjectRemoteRequest.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/sequence_exporting/GTTestsProjectSequenceExporting.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/sequence_exporting/GTTestsProjectSequenceExporting.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/sequence_exporting/from_project_view/GTTestsFromProjectView.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/sequence_exporting/from_project_view/GTTestsFromProjectView.h
- src/plugins/GUITestBase/src/tests/common_scenarios/project/user_locking/GTTestsProjectUserLocking.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/project/user_locking/GTTestsProjectUserLocking.h
- src/plugins/GUITestBase/src/tests/common_scenarios/query_designer/GTTestsQueryDesigner.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/query_designer/GTTestsQueryDesigner.h
- src/plugins/GUITestBase/src/tests/common_scenarios/repeat_finder/GTTestsRepeatFinder.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/repeat_finder/GTTestsRepeatFinder.h
- src/plugins/GUITestBase/src/tests/common_scenarios/sanger/GTTestsSanger.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/sanger/GTTestsSanger.h
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_edit/GTTestsSequenceEdit.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_edit/GTTestsSequenceEdit.h
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_edit/GTTestsSequenceEditMode.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_edit/GTTestsSequenceEditMode.h
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_selection/GTTestsSequenceSelection.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_selection/GTTestsSequenceSelection.h
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_view/GTTestsSequenceView.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/sequence_view/GTTestsSequenceView.h
- src/plugins/GUITestBase/src/tests/common_scenarios/smith_waterman_dialog/GTTestsSWDialog.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/smith_waterman_dialog/GTTestsSWDialog.h
- src/plugins/GUITestBase/src/tests/common_scenarios/start_page/GTTestsStartPage.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/start_page/GTTestsStartPage.h
- src/plugins/GUITestBase/src/tests/common_scenarios/toggle_view/GTTestsToggleView.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/toggle_view/GTTestsToggleView.h
- src/plugins/GUITestBase/src/tests/common_scenarios/tree_viewer/GTTestsCommonScenariousTreeviewer.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/tree_viewer/GTTestsCommonScenariousTreeviewer.h
- src/plugins/GUITestBase/src/tests/common_scenarios/undo_redo/GTTestsUndoRedo.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/undo_redo/GTTestsUndoRedo.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/GTTestsWorkflowDesigner.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/GTTestsWorkflowDesigner.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/dashboard/GTTestsWorkflowDashboard.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/dashboard/GTTestsWorkflowDashboard.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/elements/GTTestsTrimmomaticElement.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/elements/GTTestsTrimmomaticElement.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/estimating/GTTestsWorkflowEstimating.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/estimating/GTTestsWorkflowEstimating.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/name_filter/GTTestsWorkflowNameFilter.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/name_filter/GTTestsWorkflowNameFilter.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/parameters_validation/GTTestsWorkflowParameterValidation.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/parameters_validation/GTTestsWorkflowParameterValidation.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/samples/GTTestsWorkflowSamples.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/samples/GTTestsWorkflowSamples.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/scripting/GTTestsWorkflowScripting.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/scripting/GTTestsWorkflowScripting.h
- src/plugins/GUITestBase/src/tests/common_scenarios/workspace/GTTestsWorkspace.cpp
- src/plugins/GUITestBase/src/tests/common_scenarios/workspace/GTTestsWorkspace.h
- src/plugins/GUITestBase/src/tests/crazy_user/GTAbstractGUIAction.cpp
- src/plugins/GUITestBase/src/tests/crazy_user/GTAbstractGUIAction.h
- src/plugins/GUITestBase/src/tests/crazy_user/GTRandomGUIActionFactory.cpp
- src/plugins/GUITestBase/src/tests/crazy_user/GTRandomGUIActionFactory.h
- src/plugins/GUITestBase/src/tests/crazy_user/GUICrazyUserTest.cpp
- src/plugins/GUITestBase/src/tests/crazy_user/GUICrazyUserTest.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_1001_2000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_1001_2000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_1_1000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_1_1000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_2001_3000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_2001_3000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_3001_4000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_3001_4000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_4001_5000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_4001_5000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_5001_6000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_5001_6000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_6001_7000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_6001_7000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_7001_8000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_7001_8000.h
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_8001_9000.cpp
- src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_8001_9000.h
- + src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_GitHub_1000_2000.cpp
- + src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_GitHub_1000_2000.h
- src/plugins/GUITestBase/transl/russian.ts
- src/plugins/GUITestBase/transl/turkish.ts
- − src/plugins/annotator/annotator.pri
- − src/plugins/annotator/annotator.pro
- src/plugins/annotator/annotator.qrc
- + src/plugins/annotator/images/dark/plasmid_features.png
- + src/plugins/annotator/images/dark/regions.png
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- src/plugins/annotator/src/AnnotatorPlugin.cpp
- src/plugins/annotator/src/AnnotatorPlugin.h
- src/plugins/annotator/src/AnnotatorTests.cpp
- src/plugins/annotator/src/AnnotatorTests.h
- src/plugins/annotator/src/CollocationWorker.cpp
- src/plugins/annotator/src/CollocationWorker.h
- src/plugins/annotator/src/CollocationsDialogController.cpp
- src/plugins/annotator/src/CollocationsDialogController.h
- src/plugins/annotator/src/CollocationsSearchAlgorithm.cpp
- src/plugins/annotator/src/CollocationsSearchAlgorithm.h
- src/plugins/annotator/src/CustomAutoAnnotationDialog.cpp
- src/plugins/annotator/src/CustomAutoAnnotationDialog.h
- src/plugins/annotator/src/CustomPatternAnnotationTask.cpp
- src/plugins/annotator/src/CustomPatternAnnotationTask.h
- src/plugins/annotator/src/GeneByGeneReportTask.cpp
- src/plugins/annotator/src/GeneByGeneReportTask.h
- src/plugins/annotator/src/GeneByGeneReportWorker.cpp
- src/plugins/annotator/src/GeneByGeneReportWorker.h
- src/plugins/annotator/transl/russian.ts
- src/plugins/annotator/transl/turkish.ts
- − src/plugins/api_tests/api_tests.pri
- − src/plugins/api_tests/api_tests.pro
- src/plugins/api_tests/src/ApiTestsPlugin.cpp
- src/plugins/api_tests/src/ApiTestsPlugin.h
- src/plugins/api_tests/src/UnitTestSuite.cpp
- src/plugins/api_tests/src/UnitTestSuite.h
- src/plugins/api_tests/src/core/datatype/annotations/AnnotationGroupUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/annotations/AnnotationGroupUnitTests.h
- src/plugins/api_tests/src/core/datatype/annotations/AnnotationUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/annotations/AnnotationUnitTests.h
- + src/plugins/api_tests/src/core/datatype/features/FeaturesUnitTest.cpp
- + src/plugins/api_tests/src/core/datatype/features/FeaturesUnitTest.h
- src/plugins/api_tests/src/core/datatype/msa/MsaConsensusAlgorithmUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/msa/MsaConsensusAlgorithmUnitTests.h
- src/plugins/api_tests/src/core/datatype/msa/MsaRowUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/msa/MsaRowUnitTests.h
- src/plugins/api_tests/src/core/datatype/msa/MsaRowUtilsUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/msa/MsaRowUtilsUnitTests.h
- src/plugins/api_tests/src/core/datatype/msa/MsaUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/msa/MsaUnitTests.h
- + src/plugins/api_tests/src/core/datatype/primers/PrimersDimerFinderUnitTest.cpp
- + src/plugins/api_tests/src/core/datatype/primers/PrimersDimerFinderUnitTest.h
- src/plugins/api_tests/src/core/datatype/udr/RawDataUdrSchemaUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/udr/RawDataUdrSchemaUnitTests.h
- src/plugins/api_tests/src/core/datatype/udr/UdrSchemaUnitTests.cpp
- src/plugins/api_tests/src/core/datatype/udr/UdrSchemaUnitTests.h
- src/plugins/api_tests/src/core/dbi/DbiTest.cpp
- src/plugins/api_tests/src/core/dbi/DbiTest.h
- src/plugins/api_tests/src/core/dbi/assembly/AssemblyDbiTestUtil.cpp
- src/plugins/api_tests/src/core/dbi/assembly/AssemblyDbiTestUtil.h
- src/plugins/api_tests/src/core/dbi/assembly/AssemblyDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/assembly/AssemblyDbiUnitTests.h
- src/plugins/api_tests/src/core/dbi/attribute/AttributeDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/attribute/AttributeDbiUnitTests.h
- src/plugins/api_tests/src/core/dbi/features/FeatureDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/features/FeatureDbiUnitTests.h
- src/plugins/api_tests/src/core/dbi/msa/MsaDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/msa/MsaDbiUnitTests.h
- src/plugins/api_tests/src/core/dbi/sequence/SequenceDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/sequence/SequenceDbiUnitTests.h
- src/plugins/api_tests/src/core/dbi/udr/UdrDbiUnitTests.cpp
- src/plugins/api_tests/src/core/dbi/udr/UdrDbiUnitTests.h
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/CInterfaceManualTests.cpp
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/CInterfaceManualTests.h
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/CInterfaceSasTests.cpp
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/CInterfaceSasTests.h
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/SchemeSimilarityUtils.cpp
- src/plugins/api_tests/src/core/external_script/base_scheme_interface/SchemeSimilarityUtils.h
- src/plugins/api_tests/src/core/format/fastq/FastqUnitTests.cpp
- src/plugins/api_tests/src/core/format/fastq/FastqUnitTests.h
- src/plugins/api_tests/src/core/format/genbank/LocationParserUnitTests.cpp
- src/plugins/api_tests/src/core/format/genbank/LocationParserUnitTests.h
- src/plugins/api_tests/src/core/format/sqlite_mod_dbi/ModDbiSQLiteSpecificUnitTests.cpp
- src/plugins/api_tests/src/core/format/sqlite_mod_dbi/ModDbiSQLiteSpecificUnitTests.h
- src/plugins/api_tests/src/core/format/sqlite_msa_dbi/MsaDbiSQLiteSpecificUnitTests.cpp
- src/plugins/api_tests/src/core/format/sqlite_msa_dbi/MsaDbiSQLiteSpecificUnitTests.h
- src/plugins/api_tests/src/core/format/sqlite_object_dbi/SQLiteObjectDbiUnitTests.cpp
- src/plugins/api_tests/src/core/format/sqlite_object_dbi/SQLiteObjectDbiUnitTests.h
- src/plugins/api_tests/src/core/format/sqlite_sequence_dbi/SequenceDbiSQLiteSpecificUnitTests.cpp
- src/plugins/api_tests/src/core/format/sqlite_sequence_dbi/SequenceDbiSQLiteSpecificUnitTests.h
- src/plugins/api_tests/src/core/gobjects/BioStruct3DObjectUnitTests.cpp
- src/plugins/api_tests/src/core/gobjects/BioStruct3DObjectUnitTests.h
- src/plugins/api_tests/src/core/gobjects/ChromatogramObjectUnitTests.cpp
- src/plugins/api_tests/src/core/gobjects/ChromatogramObjectUnitTests.h
- src/plugins/api_tests/src/core/gobjects/FeaturesTableObjectUnitTest.cpp
- src/plugins/api_tests/src/core/gobjects/FeaturesTableObjectUnitTest.h
- src/plugins/api_tests/src/core/gobjects/MsaObjectUnitTests.cpp
- src/plugins/api_tests/src/core/gobjects/MsaObjectUnitTests.h
- src/plugins/api_tests/src/core/gobjects/PhyTreeObjectUnitTests.cpp
- src/plugins/api_tests/src/core/gobjects/PhyTreeObjectUnitTests.h
- src/plugins/api_tests/src/core/gobjects/TextObjectUnitTests.cpp
- src/plugins/api_tests/src/core/gobjects/TextObjectUnitTests.h
- src/plugins/api_tests/src/core/util/BAMUtilsUnitTests.cpp
- src/plugins/api_tests/src/core/util/BAMUtilsUnitTests.h
- src/plugins/api_tests/src/core/util/DatatypeSerializeUtilsUnitTest.cpp
- src/plugins/api_tests/src/core/util/DatatypeSerializeUtilsUnitTest.h
- src/plugins/api_tests/src/core/util/DynTableTests.cpp
- src/plugins/api_tests/src/core/util/DynTableTests.h
- src/plugins/api_tests/src/core/util/MsaDbiUtilsUnitTests.cpp
- src/plugins/api_tests/src/core/util/MsaDbiUtilsUnitTests.h
- src/plugins/api_tests/src/core/util/MsaImporterExporterUnitTests.cpp
- src/plugins/api_tests/src/core/util/MsaImporterExporterUnitTests.h
- src/plugins/api_tests/src/core/util/MsaUtilsUnitTests.cpp
- src/plugins/api_tests/src/core/util/MsaUtilsUnitTests.h
- src/plugins/api_tests/src/unittest.h
- − src/plugins/biostruct3d_view/biostruct3d_view.pri
- − src/plugins/biostruct3d_view/biostruct3d_view.pro
- src/plugins/biostruct3d_view/biostruct3d_view.qrc
- − src/plugins/biostruct3d_view/images/lock.png
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- src/plugins/biostruct3d_view/src/AnaglyphRenderer.cpp
- src/plugins/biostruct3d_view/src/AnaglyphRenderer.h
- src/plugins/biostruct3d_view/src/BallAndStickGLRenderer.cpp
- src/plugins/biostruct3d_view/src/BallAndStickGLRenderer.h
- src/plugins/biostruct3d_view/src/BioStruct3DColorScheme.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DColorScheme.h
- src/plugins/biostruct3d_view/src/BioStruct3DGLImageExportTask.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DGLImageExportTask.h
- src/plugins/biostruct3d_view/src/BioStruct3DGLRender.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DGLRender.h
- src/plugins/biostruct3d_view/src/BioStruct3DGLWidget.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DGLWidget.h
- src/plugins/biostruct3d_view/src/BioStruct3DSplitter.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DSplitter.h
- src/plugins/biostruct3d_view/src/BioStruct3DSubsetEditor.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DSubsetEditor.h
- src/plugins/biostruct3d_view/src/BioStruct3DViewPlugin.cpp
- src/plugins/biostruct3d_view/src/BioStruct3DViewPlugin.h
- src/plugins/biostruct3d_view/src/GLFrameManager.cpp
- src/plugins/biostruct3d_view/src/GLFrameManager.h
- src/plugins/biostruct3d_view/src/GraphicUtils.cpp
- src/plugins/biostruct3d_view/src/GraphicUtils.h
- src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.cpp
- src/plugins/biostruct3d_view/src/MolecularSurfaceRenderer.h
- src/plugins/biostruct3d_view/src/SelectModelsDialog.cpp
- src/plugins/biostruct3d_view/src/SelectModelsDialog.h
- src/plugins/biostruct3d_view/src/SettingsDialog.cpp
- src/plugins/biostruct3d_view/src/SettingsDialog.h
- src/plugins/biostruct3d_view/src/StructuralAlignmentDialog.cpp
- src/plugins/biostruct3d_view/src/StructuralAlignmentDialog.h
- src/plugins/biostruct3d_view/src/TubeGLRenderer.cpp
- src/plugins/biostruct3d_view/src/TubeGLRenderer.h
- src/plugins/biostruct3d_view/src/VanDerWaalsGLRenderer.cpp
- src/plugins/biostruct3d_view/src/VanDerWaalsGLRenderer.h
- src/plugins/biostruct3d_view/src/WormsGLRenderer.cpp
- src/plugins/biostruct3d_view/src/WormsGLRenderer.h
- src/plugins/biostruct3d_view/transl/russian.ts
- src/plugins/biostruct3d_view/transl/turkish.ts
- − src/plugins/chroma_view/chroma_view.pri
- − src/plugins/chroma_view/chroma_view.pro
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- + src/plugins/chroma_view/images/dark/traces.png
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- src/plugins/chroma_view/src/ChromaViewPlugin.cpp
- src/plugins/chroma_view/src/ChromaViewPlugin.h
- src/plugins/chroma_view/src/ChromatogramView.cpp
- src/plugins/chroma_view/src/ChromatogramView.h
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- − src/plugins/circular_view/circular_view.pri
- − src/plugins/circular_view/circular_view.pro
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- src/plugins/circular_view/src/CircularItems.h
- src/plugins/circular_view/src/CircularView.cpp
- src/plugins/circular_view/src/CircularView.h
- src/plugins/circular_view/src/CircularViewImageExportTask.cpp
- src/plugins/circular_view/src/CircularViewImageExportTask.h
- src/plugins/circular_view/src/CircularViewPlugin.cpp
- src/plugins/circular_view/src/CircularViewPlugin.h
- src/plugins/circular_view/src/CircularViewSettingsWidget.cpp
- src/plugins/circular_view/src/CircularViewSettingsWidget.h
- src/plugins/circular_view/src/CircularViewSettingsWidgetFactory.cpp
- src/plugins/circular_view/src/CircularViewSettingsWidgetFactory.h
- src/plugins/circular_view/src/CircularViewSplitter.cpp
- src/plugins/circular_view/src/CircularViewSplitter.h
- src/plugins/circular_view/src/RestrictionMapWidget.cpp
- src/plugins/circular_view/src/RestrictionMapWidget.h
- src/plugins/circular_view/src/SetSequenceOriginDialog.cpp
- src/plugins/circular_view/src/SetSequenceOriginDialog.h
- src/plugins/circular_view/src/ShiftSequenceStartTask.cpp
- src/plugins/circular_view/src/ShiftSequenceStartTask.h
- src/plugins/circular_view/transl/russian.ts
- src/plugins/circular_view/transl/turkish.ts
- − src/plugins/dbi_bam/dbi_bam.pri
- − src/plugins/dbi_bam/dbi_bam.pro
- src/plugins/dbi_bam/src/Alignment.cpp
- src/plugins/dbi_bam/src/Alignment.h
- src/plugins/dbi_bam/src/BAMDbiPlugin.cpp
- src/plugins/dbi_bam/src/BAMDbiPlugin.h
- src/plugins/dbi_bam/src/BAMFormat.cpp
- src/plugins/dbi_bam/src/BAMFormat.h
- src/plugins/dbi_bam/src/BaiReader.cpp
- src/plugins/dbi_bam/src/BaiReader.h
- src/plugins/dbi_bam/src/BaiWriter.cpp
- src/plugins/dbi_bam/src/BaiWriter.h
- src/plugins/dbi_bam/src/BgzfReader.cpp
- src/plugins/dbi_bam/src/BgzfReader.h
- src/plugins/dbi_bam/src/BgzfWriter.cpp
- src/plugins/dbi_bam/src/BgzfWriter.h
- src/plugins/dbi_bam/src/CancelledException.cpp
- src/plugins/dbi_bam/src/CancelledException.h
- src/plugins/dbi_bam/src/CigarValidator.cpp
- src/plugins/dbi_bam/src/CigarValidator.h
- src/plugins/dbi_bam/src/ConvertToSQLiteDialog.cpp
- src/plugins/dbi_bam/src/ConvertToSQLiteDialog.h
- src/plugins/dbi_bam/src/ConvertToSQLiteTask.cpp
- src/plugins/dbi_bam/src/ConvertToSQLiteTask.h
- src/plugins/dbi_bam/src/Dbi.cpp
- src/plugins/dbi_bam/src/Dbi.h
- src/plugins/dbi_bam/src/Exception.cpp
- src/plugins/dbi_bam/src/Exception.h
- src/plugins/dbi_bam/src/Header.cpp
- src/plugins/dbi_bam/src/Header.h
- src/plugins/dbi_bam/src/IOException.cpp
- src/plugins/dbi_bam/src/IOException.h
- src/plugins/dbi_bam/src/Index.cpp
- src/plugins/dbi_bam/src/Index.h
- src/plugins/dbi_bam/src/InvalidFormatException.cpp
- src/plugins/dbi_bam/src/InvalidFormatException.h
- src/plugins/dbi_bam/src/LoadBamInfoTask.cpp
- src/plugins/dbi_bam/src/LoadBamInfoTask.h
- src/plugins/dbi_bam/src/PrepareToImportTask.cpp
- src/plugins/dbi_bam/src/PrepareToImportTask.h
- src/plugins/dbi_bam/src/Reader.cpp
- src/plugins/dbi_bam/src/Reader.h
- src/plugins/dbi_bam/src/SamReader.cpp
- src/plugins/dbi_bam/src/SamReader.h
- src/plugins/dbi_bam/src/SamtoolsBasedDbi.cpp
- src/plugins/dbi_bam/src/SamtoolsBasedDbi.h
- src/plugins/dbi_bam/src/VirtualOffset.cpp
- src/plugins/dbi_bam/src/VirtualOffset.h
- src/plugins/dbi_bam/transl/russian.ts
- src/plugins/dbi_bam/transl/turkish.ts
- − src/plugins/dna_export/dna_export.pri
- − src/plugins/dna_export/dna_export.pro
- src/plugins/dna_export/src/CSVColumnConfiguration.h
- src/plugins/dna_export/src/CSVColumnConfigurationDialog.cpp
- src/plugins/dna_export/src/CSVColumnConfigurationDialog.h
- src/plugins/dna_export/src/DNAExportPlugin.cpp
- src/plugins/dna_export/src/DNAExportPlugin.h
- src/plugins/dna_export/src/DNAExportPluginTests.cpp
- src/plugins/dna_export/src/DNAExportPluginTests.h
- src/plugins/dna_export/src/DNASequenceGenerator.cpp
- src/plugins/dna_export/src/DNASequenceGenerator.h
- src/plugins/dna_export/src/DNASequenceGeneratorDialog.cpp
- src/plugins/dna_export/src/DNASequenceGeneratorDialog.h
- src/plugins/dna_export/src/ExportAlignmentViewItems.cpp
- src/plugins/dna_export/src/ExportAlignmentViewItems.h
- src/plugins/dna_export/src/ExportBlastResultDialog.cpp
- src/plugins/dna_export/src/ExportBlastResultDialog.h
- src/plugins/dna_export/src/ExportChromatogramDialog.cpp
- src/plugins/dna_export/src/ExportChromatogramDialog.h
- src/plugins/dna_export/src/ExportMSA2MSADialog.cpp
- src/plugins/dna_export/src/ExportMSA2MSADialog.h
- src/plugins/dna_export/src/ExportMSA2SequencesDialog.cpp
- src/plugins/dna_export/src/ExportMSA2SequencesDialog.h
- src/plugins/dna_export/src/ExportProjectViewItems.cpp
- src/plugins/dna_export/src/ExportProjectViewItems.h
- src/plugins/dna_export/src/ExportQualityScoresTask.cpp
- src/plugins/dna_export/src/ExportQualityScoresTask.h
- src/plugins/dna_export/src/ExportQualityScoresWorker.cpp
- src/plugins/dna_export/src/ExportQualityScoresWorker.h
- src/plugins/dna_export/src/ExportSelectedSeqRegionsTask.cpp
- src/plugins/dna_export/src/ExportSelectedSeqRegionsTask.h
- src/plugins/dna_export/src/ExportSequenceTask.cpp
- src/plugins/dna_export/src/ExportSequenceTask.h
- src/plugins/dna_export/src/ExportSequenceViewItems.cpp
- src/plugins/dna_export/src/ExportSequenceViewItems.h
- src/plugins/dna_export/src/ExportSequences2MSADialog.cpp
- src/plugins/dna_export/src/ExportSequences2MSADialog.h
- src/plugins/dna_export/src/ExportSequencesDialog.cpp
- src/plugins/dna_export/src/ExportSequencesDialog.h
- src/plugins/dna_export/src/ExportUtils.cpp
- src/plugins/dna_export/src/ExportUtils.h
- src/plugins/dna_export/src/GenerateDNAWorker.cpp
- src/plugins/dna_export/src/GenerateDNAWorker.h
- src/plugins/dna_export/src/GetSequenceByIdDialog.cpp
- src/plugins/dna_export/src/GetSequenceByIdDialog.h
- src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.cpp
- src/plugins/dna_export/src/ImportAnnotationsFromCSVDialog.h
- src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.cpp
- src/plugins/dna_export/src/ImportAnnotationsFromCSVTask.h
- src/plugins/dna_export/src/ImportQualityScoresTask.cpp
- src/plugins/dna_export/src/ImportQualityScoresTask.h
- src/plugins/dna_export/src/ImportQualityScoresWorker.cpp
- src/plugins/dna_export/src/ImportQualityScoresWorker.h
- src/plugins/dna_export/src/McaEditorContext.cpp
- src/plugins/dna_export/src/McaEditorContext.h
- src/plugins/dna_export/src/dialogs/ExportMca2MsaDialog.cpp
- src/plugins/dna_export/src/dialogs/ExportMca2MsaDialog.h
- src/plugins/dna_export/src/dialogs/SaveSelectedSequenceFromMSADialogController.cpp
- src/plugins/dna_export/src/dialogs/SaveSelectedSequenceFromMSADialogController.h
- src/plugins/dna_export/src/tasks/ConvertMca2MsaTask.cpp
- src/plugins/dna_export/src/tasks/ConvertMca2MsaTask.h
- src/plugins/dna_export/src/tasks/ExportMca2MsaTask.cpp
- src/plugins/dna_export/src/tasks/ExportMca2MsaTask.h
- src/plugins/dna_export/transl/russian.ts
- src/plugins/dna_export/transl/turkish.ts
- − src/plugins/dna_flexibility/dna_flexibility.pri
- − src/plugins/dna_flexibility/dna_flexibility.pro
- src/plugins/dna_flexibility/dna_flexibility.qrc
- + src/plugins/dna_flexibility/images/dark/flexibility.png
- src/plugins/dna_flexibility/images/flexibility.png → src/plugins/dna_flexibility/images/light/flexibility.png
- src/plugins/dna_flexibility/src/DNAFlexDialog.cpp
- src/plugins/dna_flexibility/src/DNAFlexDialog.h
- src/plugins/dna_flexibility/src/DNAFlexGraph.cpp
- src/plugins/dna_flexibility/src/DNAFlexGraph.h
- src/plugins/dna_flexibility/src/DNAFlexGraphAlgorithm.cpp
- src/plugins/dna_flexibility/src/DNAFlexGraphAlgorithm.h
- src/plugins/dna_flexibility/src/DNAFlexPlugin.cpp
- src/plugins/dna_flexibility/src/DNAFlexPlugin.h
- src/plugins/dna_flexibility/src/DNAFlexTask.cpp
- src/plugins/dna_flexibility/src/DNAFlexTask.h
- src/plugins/dna_flexibility/src/FindHighFlexRegions.cpp
- src/plugins/dna_flexibility/src/FindHighFlexRegions.h
- src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.cpp
- src/plugins/dna_flexibility/src/FindHighFlexRegionsAlgorithm.h
- src/plugins/dna_flexibility/src/HighFlexResult.h
- src/plugins/dna_flexibility/src/HighFlexSettings.cpp
- src/plugins/dna_flexibility/src/HighFlexSettings.h
- src/plugins/dna_flexibility/transl/russian.ts
- src/plugins/dna_flexibility/transl/turkish.ts
- − src/plugins/dna_graphpack/dna_graphpack.pri
- − src/plugins/dna_graphpack/dna_graphpack.pro
- − src/plugins/dna_graphpack/dna_graphpack.qrc
- − src/plugins/dna_graphpack/images/graphs.png
- src/plugins/dna_graphpack/src/BaseContentGraph.cpp
- src/plugins/dna_graphpack/src/BaseContentGraph.h
- src/plugins/dna_graphpack/src/CumulativeSkew.cpp
- src/plugins/dna_graphpack/src/CumulativeSkew.h
- src/plugins/dna_graphpack/src/DNAGraphPackPlugin.cpp
- src/plugins/dna_graphpack/src/DNAGraphPackPlugin.h
- src/plugins/dna_graphpack/src/DeviationGraph.cpp
- src/plugins/dna_graphpack/src/DeviationGraph.h
- src/plugins/dna_graphpack/src/EntropyAlgorithm.cpp
- src/plugins/dna_graphpack/src/EntropyAlgorithm.h
- src/plugins/dna_graphpack/src/GCFramePlot.cpp
- src/plugins/dna_graphpack/src/GCFramePlot.h
- src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.cpp
- src/plugins/dna_graphpack/src/KarlinSignatureDifferenceGraph.h
- src/plugins/dna_graphpack/transl/turkish.ts
- − src/plugins/dna_stat/dna_stat.pri
- − src/plugins/dna_stat/dna_stat.pro
- src/plugins/dna_stat/src/DNAStatMSAProfileDialog.cpp
- src/plugins/dna_stat/src/DNAStatMSAProfileDialog.h
- src/plugins/dna_stat/src/DNAStatPlugin.cpp
- src/plugins/dna_stat/src/DNAStatPlugin.h
- src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.cpp
- src/plugins/dna_stat/src/DistanceMatrixMSAProfileDialog.h
- src/plugins/dna_stat/transl/russian.ts
- src/plugins/dna_stat/transl/turkish.ts
- − src/plugins/dotplot/dotplot.pri
- − src/plugins/dotplot/dotplot.pro
- src/plugins/dotplot/dotplot.qrc
- + src/plugins/dotplot/images/dark/dotplot.png
- src/plugins/dotplot/images/dotplot.png → src/plugins/dotplot/images/light/dotplot.png
- − src/plugins/dotplot/images/lock.png
- src/plugins/dotplot/src/DotPlotClasses.cpp
- src/plugins/dotplot/src/DotPlotClasses.h
- src/plugins/dotplot/src/DotPlotDialog.cpp
- src/plugins/dotplot/src/DotPlotDialog.h
- src/plugins/dotplot/src/DotPlotFilesDialog.cpp
- src/plugins/dotplot/src/DotPlotFilesDialog.h
- src/plugins/dotplot/src/DotPlotFilterDialog.cpp
- src/plugins/dotplot/src/DotPlotFilterDialog.h
- src/plugins/dotplot/src/DotPlotImageExportTask.cpp
- src/plugins/dotplot/src/DotPlotImageExportTask.h
- src/plugins/dotplot/src/DotPlotPlugin.cpp
- src/plugins/dotplot/src/DotPlotPlugin.h
- src/plugins/dotplot/src/DotPlotSplitter.cpp
- src/plugins/dotplot/src/DotPlotSplitter.h
- src/plugins/dotplot/src/DotPlotTasks.cpp
- src/plugins/dotplot/src/DotPlotTasks.h
- src/plugins/dotplot/src/DotPlotWidget.cpp
- src/plugins/dotplot/src/DotPlotWidget.h
- src/plugins/dotplot/transl/russian.ts
- src/plugins/dotplot/transl/turkish.ts
- − src/plugins/enzymes/enzymes.pri
- − src/plugins/enzymes/enzymes.pro
- src/plugins/enzymes/enzymes.qrc
- + src/plugins/enzymes/images/dark/enzymes.png
- src/plugins/enzymes/images/enzymes.png → src/plugins/enzymes/images/light/enzymes.png
- src/plugins/enzymes/src/CloningUtilTasks.cpp
- src/plugins/enzymes/src/CloningUtilTasks.h
- src/plugins/enzymes/src/ConstructMoleculeDialog.cpp
- src/plugins/enzymes/src/ConstructMoleculeDialog.h
- src/plugins/enzymes/src/CreateFragmentDialog.cpp
- src/plugins/enzymes/src/CreateFragmentDialog.h
- src/plugins/enzymes/src/DNAFragment.cpp
- src/plugins/enzymes/src/DNAFragment.h
- src/plugins/enzymes/src/DigestSequenceDialog.cpp
- src/plugins/enzymes/src/DigestSequenceDialog.h
- src/plugins/enzymes/src/EditFragmentDialog.cpp
- src/plugins/enzymes/src/EditFragmentDialog.h
- src/plugins/enzymes/src/EnzymesIO.cpp
- src/plugins/enzymes/src/EnzymesIO.h
- src/plugins/enzymes/src/EnzymesPlugin.cpp
- src/plugins/enzymes/src/EnzymesPlugin.h
- src/plugins/enzymes/src/EnzymesQuery.cpp
- src/plugins/enzymes/src/EnzymesQuery.h
- src/plugins/enzymes/src/EnzymesTests.cpp
- src/plugins/enzymes/src/EnzymesTests.h
- src/plugins/enzymes/src/FindEnzymesAlgorithm.h
- src/plugins/enzymes/src/FindEnzymesTask.cpp
- src/plugins/enzymes/src/FindEnzymesTask.h
- src/plugins/enzymes/src/enzymes_dialog/EnzymeTreeItem.cpp
- src/plugins/enzymes/src/enzymes_dialog/EnzymeTreeItem.h
- src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.cpp
- src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.h
- src/plugins/enzymes/src/enzymes_dialog/EnzymesSelectorWidget.ui
- src/plugins/enzymes/src/enzymes_dialog/FindEnzymesDialogSequenceView.cpp
- src/plugins/enzymes/src/enzymes_dialog/RegionSelectorWithExclude.cpp
- src/plugins/enzymes/src/enzymes_dialog/RegionSelectorWithExclude.h
- src/plugins/enzymes/src/insert/InsertEnzymeDialog.cpp
- src/plugins/enzymes/src/insert/InsertEnzymeDialog.h
- src/plugins/enzymes/src/insert/InsertEnzymeWidget.cpp
- src/plugins/enzymes/src/insert/InsertEnzymeWidget.h
- src/plugins/enzymes/transl/russian.ts
- src/plugins/enzymes/transl/turkish.ts
- − src/plugins/external_tool_support/external_tool_support.pri
- − src/plugins/external_tool_support/external_tool_support.pro
- src/plugins/external_tool_support/external_tool_support.qrc
- − src/plugins/external_tool_support/images/add.png
- + src/plugins/external_tool_support/images/dark/clustalo.png
- + src/plugins/external_tool_support/images/dark/clustalo_gray.png
- + src/plugins/external_tool_support/images/dark/clustalo_warn.png
- + src/plugins/external_tool_support/images/dark/clustalw.png
- + src/plugins/external_tool_support/images/dark/clustalw_gray.png
- + src/plugins/external_tool_support/images/dark/clustalw_warn.png
- + src/plugins/external_tool_support/images/dark/cmdline.png
- + src/plugins/external_tool_support/images/dark/cmdline_gray.png
- + src/plugins/external_tool_support/images/dark/cmdline_warn.png
- + src/plugins/external_tool_support/images/dark/down.png
- + src/plugins/external_tool_support/images/dark/hmmer.png
- + src/plugins/external_tool_support/images/dark/mfold.png
- + src/plugins/external_tool_support/images/dark/mfold_warn.png
- + src/plugins/external_tool_support/images/dark/mrbayes.png
- + src/plugins/external_tool_support/images/dark/mrbayes_gray.png
- + src/plugins/external_tool_support/images/dark/mrbayes_warn.png
- + src/plugins/external_tool_support/images/dark/ncbi.png
- + src/plugins/external_tool_support/images/dark/ncbi_gray.png
- + src/plugins/external_tool_support/images/dark/ncbi_warn.png
- + src/plugins/external_tool_support/images/dark/perl.png
- + src/plugins/external_tool_support/images/dark/perl_gray.png
- + src/plugins/external_tool_support/images/dark/perl_warn.png
- + src/plugins/external_tool_support/images/dark/python_cutadapt_warn.png
- + src/plugins/external_tool_support/images/dark/python_warn.png
- + src/plugins/external_tool_support/images/dark/up.png
- − src/plugins/external_tool_support/images/editdelete.png
- − src/plugins/external_tool_support/images/kalign.png
- src/plugins/external_tool_support/images/clustalo.png → src/plugins/external_tool_support/images/light/clustalo.png
- src/plugins/external_tool_support/images/clustalo_gray.png → src/plugins/external_tool_support/images/light/clustalo_gray.png
- src/plugins/external_tool_support/images/clustalo_warn.png → src/plugins/external_tool_support/images/light/clustalo_warn.png
- src/plugins/external_tool_support/images/clustalx.png → src/plugins/external_tool_support/images/light/clustalw.png
- src/plugins/external_tool_support/images/clustalx_gray.png → src/plugins/external_tool_support/images/light/clustalw_gray.png
- src/plugins/external_tool_support/images/clustalx_warn.png → src/plugins/external_tool_support/images/light/clustalw_warn.png
- src/plugins/external_tool_support/images/cmdline.png → src/plugins/external_tool_support/images/light/cmdline.png
- src/plugins/external_tool_support/images/cmdline_gray.png → src/plugins/external_tool_support/images/light/cmdline_gray.png
- src/plugins/external_tool_support/images/cmdline_warn.png → src/plugins/external_tool_support/images/light/cmdline_warn.png
- src/plugins/external_tool_support/images/down.png → src/plugins/external_tool_support/images/light/down.png
- src/plugins/external_tool_support/images/hmmer.png → src/plugins/external_tool_support/images/light/hmmer.png
- src/plugins/external_tool_support/images/mfold.png → src/plugins/external_tool_support/images/light/mfold.png
- src/plugins/external_tool_support/images/mfold_warn.png → src/plugins/external_tool_support/images/light/mfold_warn.png
- src/plugins/external_tool_support/images/mrbayes.png → src/plugins/external_tool_support/images/light/mrbayes.png
- src/plugins/external_tool_support/images/mrbayes_gray.png → src/plugins/external_tool_support/images/light/mrbayes_gray.png
- src/plugins/external_tool_support/images/mrbayes_warn.png → src/plugins/external_tool_support/images/light/mrbayes_warn.png
- src/plugins/external_tool_support/images/ncbi.png → src/plugins/external_tool_support/images/light/ncbi.png
- src/plugins/external_tool_support/images/ncbi_gray.png → src/plugins/external_tool_support/images/light/ncbi_gray.png
- src/plugins/external_tool_support/images/ncbi_warn.png → src/plugins/external_tool_support/images/light/ncbi_warn.png
- src/plugins/external_tool_support/images/perl.png → src/plugins/external_tool_support/images/light/perl.png
- src/plugins/external_tool_support/images/perl_gray.png → src/plugins/external_tool_support/images/light/perl_gray.png
- src/plugins/external_tool_support/images/perl_warn.png → src/plugins/external_tool_support/images/light/perl_warn.png
- src/plugins/external_tool_support/images/python_cutadapt_warn.png → src/plugins/external_tool_support/images/light/python_cutadapt_warn.png
- src/plugins/external_tool_support/images/python_warn.png → src/plugins/external_tool_support/images/light/python_warn.png
- src/plugins/external_tool_support/images/up.png → src/plugins/external_tool_support/images/light/up.png
- src/plugins/external_tool_support/src/ETSProjectViewItemsController.cpp
- src/plugins/external_tool_support/src/ETSProjectViewItemsController.h
- src/plugins/external_tool_support/src/ExternalToolManager.cpp
- src/plugins/external_tool_support/src/ExternalToolManager.h
- src/plugins/external_tool_support/src/ExternalToolSupportL10N.h
- src/plugins/external_tool_support/src/ExternalToolSupportPlugin.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportPlugin.h
- src/plugins/external_tool_support/src/ExternalToolSupportSettings.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportSettings.h
- src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.cpp
- src/plugins/external_tool_support/src/ExternalToolSupportSettingsController.h
- src/plugins/external_tool_support/src/RnaSeqCommon.cpp
- src/plugins/external_tool_support/src/RnaSeqCommon.h
- src/plugins/external_tool_support/src/RunnerTool.cpp
- src/plugins/external_tool_support/src/RunnerTool.h
- src/plugins/external_tool_support/src/TaskLocalStorage.cpp
- src/plugins/external_tool_support/src/TaskLocalStorage.h
- src/plugins/external_tool_support/src/bedtools/BedToolsWorkersLibrary.cpp
- src/plugins/external_tool_support/src/bedtools/BedToolsWorkersLibrary.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsIntersectTask.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsIntersectTask.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupport.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupport.h
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupportTask.cpp
- src/plugins/external_tool_support/src/bedtools/BedtoolsSupportTask.h
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigTask.cpp
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigTask.h
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigWorker.cpp
- src/plugins/external_tool_support/src/bigWigTools/BedGraphToBigWigWorker.h
- src/plugins/external_tool_support/src/bigWigTools/BigWigSupport.cpp
- src/plugins/external_tool_support/src/bigWigTools/BigWigSupport.h
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastDialog.cpp
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastDialog.h
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastWorker.cpp
- src/plugins/external_tool_support/src/blast/AlignToReferenceBlastWorker.h
- src/plugins/external_tool_support/src/blast/BlastCommonTask.cpp
- src/plugins/external_tool_support/src/blast/BlastCommonTask.h
- src/plugins/external_tool_support/src/blast/BlastDBCmdDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastDBCmdDialog.h
- src/plugins/external_tool_support/src/blast/BlastDBCmdTask.cpp
- src/plugins/external_tool_support/src/blast/BlastDBCmdTask.h
- src/plugins/external_tool_support/src/blast/BlastDBSelectorWidgetController.cpp
- src/plugins/external_tool_support/src/blast/BlastDBSelectorWidgetController.h
- src/plugins/external_tool_support/src/blast/BlastNTask.cpp
- src/plugins/external_tool_support/src/blast/BlastNTask.h
- src/plugins/external_tool_support/src/blast/BlastPTask.cpp
- src/plugins/external_tool_support/src/blast/BlastPTask.h
- src/plugins/external_tool_support/src/blast/BlastRunCommonDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastRunCommonDialog.h
- src/plugins/external_tool_support/src/blast/BlastRunDialog.cpp
- src/plugins/external_tool_support/src/blast/BlastRunDialog.h
- src/plugins/external_tool_support/src/blast/BlastSupport.cpp
- src/plugins/external_tool_support/src/blast/BlastSupport.h
- src/plugins/external_tool_support/src/blast/BlastTaskSettings.cpp
- src/plugins/external_tool_support/src/blast/BlastTaskSettings.h
- src/plugins/external_tool_support/src/blast/BlastWorker.cpp
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- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorker.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorker.h
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorkerFactory.cpp
- src/plugins/external_tool_support/src/trimmomatic/TrimmomaticWorkerFactory.h
- src/plugins/external_tool_support/src/trimmomatic/steps/AvgQualStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/AvgQualStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/CropStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/CropStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/HeadCropStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/HeadCropStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/IlluminaClipStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/IlluminaClipStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/LeadingStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/LeadingStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/MaxInfoStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/MaxInfoStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/MinLenStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/MinLenStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/SlidingWindowStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/SlidingWindowStep.h
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred33Step.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred33Step.h
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred64Step.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/ToPhred64Step.h
- src/plugins/external_tool_support/src/trimmomatic/steps/TrailingStep.cpp
- src/plugins/external_tool_support/src/trimmomatic/steps/TrailingStep.h
- src/plugins/external_tool_support/src/trimmomatic/util/LengthSettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/LengthSettingsWidget.h
- src/plugins/external_tool_support/src/trimmomatic/util/LineEditHighlighter.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/LineEditHighlighter.h
- src/plugins/external_tool_support/src/trimmomatic/util/NoSettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/NoSettingsWidget.h
- src/plugins/external_tool_support/src/trimmomatic/util/QualitySettingsWidget.cpp
- src/plugins/external_tool_support/src/trimmomatic/util/QualitySettingsWidget.h
- src/plugins/external_tool_support/src/utils/AlignMsaAction.cpp
- src/plugins/external_tool_support/src/utils/AlignMsaAction.h
- src/plugins/external_tool_support/src/utils/BaseShortReadsAlignerWorker.cpp
- src/plugins/external_tool_support/src/utils/BaseShortReadsAlignerWorker.h
- src/plugins/external_tool_support/src/utils/ExportTasks.cpp
- src/plugins/external_tool_support/src/utils/ExportTasks.h
- src/plugins/external_tool_support/src/utils/ExternalToolSearchTask.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolSearchTask.h
- src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolSupportAction.h
- src/plugins/external_tool_support/src/utils/ExternalToolUtils.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolUtils.h
- src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.cpp
- src/plugins/external_tool_support/src/utils/ExternalToolValidateTask.h
- src/plugins/external_tool_support/src/utils/OutputCollector.cpp
- src/plugins/external_tool_support/src/utils/OutputCollector.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupport.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupport.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupportTask.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusSupportTask.h
- src/plugins/external_tool_support/src/vcftools/VcfConsensusWorker.cpp
- src/plugins/external_tool_support/src/vcftools/VcfConsensusWorker.h
- src/plugins/external_tool_support/src/vcfutils/VcfutilsSupport.cpp
- src/plugins/external_tool_support/src/vcfutils/VcfutilsSupport.h
- src/plugins/external_tool_support/transl/russian.ts
- src/plugins/external_tool_support/transl/turkish.ts
- − src/plugins/genecut/genecut.pri
- − src/plugins/genecut/genecut.pro
- src/plugins/genecut/genecut.qrc
- − src/plugins/genecut/icon/genecut.png
- + src/plugins/genecut/images/genecut.png
- src/plugins/genecut/src/GenecutOPWidget.cpp
- src/plugins/genecut/src/GenecutOPWidgetFactory.cpp
- src/plugins/genecut/src/GenecutPlugin.h
- src/plugins/genecut/transl/russian.ts
- − src/plugins/genome_aligner/genome_aligner.pri
- − src/plugins/genome_aligner/genome_aligner.pro
- src/plugins/genome_aligner/src/BuildSArraySettingsWidget.cpp
- src/plugins/genome_aligner/src/BuildSArraySettingsWidget.h
- src/plugins/genome_aligner/src/DataBunch.cpp
- src/plugins/genome_aligner/src/DataBunch.h
- src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerCMDLineTask.h
- src/plugins/genome_aligner/src/GenomeAlignerFindTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerFindTask.h
- src/plugins/genome_aligner/src/GenomeAlignerIO.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIO.h
- src/plugins/genome_aligner/src/GenomeAlignerIndex.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndex.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexPart.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexPart.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexTask.h
- src/plugins/genome_aligner/src/GenomeAlignerIndexWorker.cpp
- src/plugins/genome_aligner/src/GenomeAlignerIndexWorker.h
- src/plugins/genome_aligner/src/GenomeAlignerPlugin.cpp
- src/plugins/genome_aligner/src/GenomeAlignerPlugin.h
- src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSearchQuery.h
- src/plugins/genome_aligner/src/GenomeAlignerSettingsController.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSettingsController.h
- src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.cpp
- src/plugins/genome_aligner/src/GenomeAlignerSettingsWidget.h
- src/plugins/genome_aligner/src/GenomeAlignerTask.cpp
- src/plugins/genome_aligner/src/GenomeAlignerTask.h
- src/plugins/genome_aligner/src/GenomeAlignerWorker.cpp
- src/plugins/genome_aligner/src/GenomeAlignerWorker.h
- src/plugins/genome_aligner/src/GenomeAlignerWriteTask.cpp
- src/plugins/genome_aligner/src/ReadShortReadsSubTask.cpp
- src/plugins/genome_aligner/src/ReadShortReadsSubTask.h
- src/plugins/genome_aligner/src/WriteAlignedReadsSubTask.cpp
- src/plugins/genome_aligner/src/WriteAlignedReadsSubTask.h
- src/plugins/genome_aligner/transl/russian.ts
- src/plugins/genome_aligner/transl/turkish.ts
- − src/plugins/linkdata_support/images/linkdata_16.png
- − src/plugins/linkdata_support/linkdata_support.pri
- − src/plugins/linkdata_support/linkdata_support.pro
- src/plugins/linkdata_support/linkdata_support.qrc
- src/plugins/linkdata_support/src/LinkDataScriptLibrary.cpp
- src/plugins/linkdata_support/src/LinkDataScriptLibrary.h
- src/plugins/linkdata_support/src/LinkDataSupportPlugin.cpp
- src/plugins/linkdata_support/src/LinkDataSupportPlugin.h
- src/plugins/linkdata_support/transl/russian.ts
- src/plugins/linkdata_support/transl/turkish.ts
- + src/plugins/orf_marker/images/dark/orf_marker.png
- src/plugins/orf_marker/images/orf_marker.png → src/plugins/orf_marker/images/light/orf_marker.png
- − src/plugins/orf_marker/orf_marker.pri
- − src/plugins/orf_marker/orf_marker.pro
- src/plugins/orf_marker/orf_marker.qrc
- src/plugins/orf_marker/src/ORFDialog.cpp
- src/plugins/orf_marker/src/ORFDialog.h
- src/plugins/orf_marker/src/ORFMarkerPlugin.cpp
- src/plugins/orf_marker/src/ORFMarkerPlugin.h
- src/plugins/orf_marker/src/ORFMarkerTask.cpp
- src/plugins/orf_marker/src/ORFMarkerTask.h
- src/plugins/orf_marker/src/ORFMarkerTests.cpp
- src/plugins/orf_marker/src/ORFMarkerTests.h
- src/plugins/orf_marker/src/ORFQuery.cpp
- src/plugins/orf_marker/src/ORFQuery.h
- src/plugins/orf_marker/src/ORFWorker.cpp
- src/plugins/orf_marker/src/ORFWorker.h
- src/plugins/orf_marker/transl/russian.ts
- src/plugins/orf_marker/transl/turkish.ts
- − src/plugins/pcr/pcr.pri
- − src/plugins/pcr/pcr.pro
- src/plugins/pcr/src/EditPrimerDialog.cpp
- src/plugins/pcr/src/EditPrimerDialog.h
- src/plugins/pcr/src/ExtractProductTask.cpp
- src/plugins/pcr/src/ExtractProductTask.h
- src/plugins/pcr/src/FindPrimerPairsWorker.cpp
- src/plugins/pcr/src/FindPrimerPairsWorker.h
- src/plugins/pcr/src/InSilicoPcrOPWidgetFactory.cpp
- src/plugins/pcr/src/InSilicoPcrOPWidgetFactory.h
- src/plugins/pcr/src/InSilicoPcrOptionPanelWidget.cpp
- src/plugins/pcr/src/InSilicoPcrOptionPanelWidget.h
- src/plugins/pcr/src/InSilicoPcrProductsTable.cpp
- src/plugins/pcr/src/InSilicoPcrProductsTable.h
- src/plugins/pcr/src/InSilicoPcrTask.cpp
- src/plugins/pcr/src/InSilicoPcrTask.h
- src/plugins/pcr/src/InSilicoPcrWorker.cpp
- src/plugins/pcr/src/InSilicoPcrWorker.h
- src/plugins/pcr/src/InSilicoPcrWorkflowTask.cpp
- src/plugins/pcr/src/InSilicoPcrWorkflowTask.h
- src/plugins/pcr/src/PcrOptionsPanelSavableTab.cpp
- src/plugins/pcr/src/PcrOptionsPanelSavableTab.h
- src/plugins/pcr/src/PcrPlugin.cpp
- src/plugins/pcr/src/PcrPlugin.h
- src/plugins/pcr/src/PrimerGroupBox.cpp
- src/plugins/pcr/src/PrimerGroupBox.h
- src/plugins/pcr/src/PrimerGroupBox.ui
- src/plugins/pcr/src/PrimerLibrary.cpp
- src/plugins/pcr/src/PrimerLibrary.h
- src/plugins/pcr/src/PrimerLibraryMdiWindow.cpp
- src/plugins/pcr/src/PrimerLibraryMdiWindow.h
- src/plugins/pcr/src/PrimerLibrarySelector.cpp
- src/plugins/pcr/src/PrimerLibrarySelector.h
- src/plugins/pcr/src/PrimerLibraryTable.cpp
- src/plugins/pcr/src/PrimerLibraryTable.h
- src/plugins/pcr/src/PrimerLibraryTableController.cpp
- src/plugins/pcr/src/PrimerLibraryTableController.h
- src/plugins/pcr/src/PrimerLibraryWidget.cpp
- src/plugins/pcr/src/PrimerLibraryWidget.h
- src/plugins/pcr/src/PrimersDetailsDialog.cpp
- src/plugins/pcr/src/PrimersDetailsDialog.h
- src/plugins/pcr/src/PrimersGrouperWorker.cpp
- src/plugins/pcr/src/PrimersGrouperWorker.h
- src/plugins/pcr/src/export/ExportPrimersDialog.cpp
- src/plugins/pcr/src/export/ExportPrimersDialog.h
- src/plugins/pcr/src/export/ExportPrimersToDatabaseTask.cpp
- src/plugins/pcr/src/export/ExportPrimersToDatabaseTask.h
- src/plugins/pcr/src/export/ExportPrimersToLocalFileTask.cpp
- src/plugins/pcr/src/export/ExportPrimersToLocalFileTask.h
- src/plugins/pcr/src/import/ImportPrimerFromObjectTask.cpp
- src/plugins/pcr/src/import/ImportPrimerFromObjectTask.h
- src/plugins/pcr/src/import/ImportPrimersDialog.cpp
- src/plugins/pcr/src/import/ImportPrimersDialog.h
- src/plugins/pcr/src/import/ImportPrimersFromFileTask.cpp
- src/plugins/pcr/src/import/ImportPrimersFromFileTask.h
- src/plugins/pcr/src/import/ImportPrimersFromFolderTask.cpp
- src/plugins/pcr/src/import/ImportPrimersFromFolderTask.h
- src/plugins/pcr/src/import/ImportPrimersMultiTask.cpp
- src/plugins/pcr/src/import/ImportPrimersMultiTask.h
- src/plugins/pcr/transl/russian.ts
- src/plugins/pcr/transl/turkish.ts
- + src/plugins/perf_monitor/images/dark/mon.png
- src/plugins/perf_monitor/images/mon.png → src/plugins/perf_monitor/images/light/mon.png
- − src/plugins/perf_monitor/perf_monitor.pri
- − src/plugins/perf_monitor/perf_monitor.pro
- src/plugins/perf_monitor/perf_monitor.qrc
- src/plugins/perf_monitor/src/PerfMonitorPlugin.cpp
- src/plugins/perf_monitor/src/PerfMonitorPlugin.h
- src/plugins/perf_monitor/src/PerfMonitorView.cpp
- src/plugins/perf_monitor/src/PerfMonitorView.h
- src/plugins/perf_monitor/transl/russian.ts
- src/plugins/perf_monitor/transl/turkish.ts
- + src/plugins/query_designer/images/dark/eye.png
- + src/plugins/query_designer/images/dark/fileopen.png
- + src/plugins/query_designer/images/dark/filesave.png
- + src/plugins/query_designer/images/dark/green_circle.png
- + src/plugins/query_designer/images/dark/run.png
- + src/plugins/query_designer/images/dark/strands.png
- src/plugins/query_designer/images/eye.png → src/plugins/query_designer/images/light/eye.png
- src/plugins/query_designer/images/fileopen.png → src/plugins/query_designer/images/light/fileopen.png
- src/plugins/query_designer/images/filesave.png → src/plugins/query_designer/images/light/filesave.png
- src/plugins/query_designer/images/green_circle.png → src/plugins/query_designer/images/light/green_circle.png
- src/plugins/query_designer/images/run.png → src/plugins/query_designer/images/light/run.png
- src/plugins/query_designer/images/strands.png → src/plugins/query_designer/images/light/strands.png
- − src/plugins/query_designer/query_designer.pri
- − src/plugins/query_designer/query_designer.pro
- src/plugins/query_designer/query_designer.qrc
- src/plugins/query_designer/src/QDDocument.cpp
- src/plugins/query_designer/src/QDDocument.h
- src/plugins/query_designer/src/QDDocumentFormat.cpp
- src/plugins/query_designer/src/QDDocumentFormat.h
- src/plugins/query_designer/src/QDGroupsEditor.cpp
- src/plugins/query_designer/src/QDGroupsEditor.h
- src/plugins/query_designer/src/QDRunDialog.cpp
- src/plugins/query_designer/src/QDRunDialog.h
- src/plugins/query_designer/src/QDSamples.cpp
- src/plugins/query_designer/src/QDSamples.h
- src/plugins/query_designer/src/QDSceneIOTasks.cpp
- src/plugins/query_designer/src/QDSceneIOTasks.h
- src/plugins/query_designer/src/QDTests.cpp
- src/plugins/query_designer/src/QDTests.h
- src/plugins/query_designer/src/QDWorker.cpp
- src/plugins/query_designer/src/QDWorker.h
- src/plugins/query_designer/src/QueryDesignerPlugin.cpp
- src/plugins/query_designer/src/QueryDesignerPlugin.h
- src/plugins/query_designer/src/QueryEditor.cpp
- src/plugins/query_designer/src/QueryEditor.h
- src/plugins/query_designer/src/QueryPalette.cpp
- src/plugins/query_designer/src/QueryPalette.h
- src/plugins/query_designer/src/QueryProcCfgDelegate.h
- src/plugins/query_designer/src/QueryProcCfgModel.h
- src/plugins/query_designer/src/QueryViewAdapter.cpp
- src/plugins/query_designer/src/QueryViewAdapter.h
- src/plugins/query_designer/src/QueryViewController.cpp
- src/plugins/query_designer/src/QueryViewController.h
- src/plugins/query_designer/src/QueryViewItems.cpp
- src/plugins/query_designer/src/QueryViewItems.h
- src/plugins/query_designer/src/library/QDFindActor.cpp
- src/plugins/query_designer/src/library/QDFindActor.h
- src/plugins/query_designer/src/library/QDFindPolyRegionsActor.cpp
- src/plugins/query_designer/src/library/QDFindPolyRegionsActor.h
- src/plugins/query_designer/src/library/QDGcContentActor.cpp
- src/plugins/query_designer/src/library/QDGcContentActor.h
- src/plugins/query_designer/transl/russian.ts
- src/plugins/query_designer/transl/turkish.ts
- + src/plugins/remote_blast/images/dark/remote_db_request.png
- − src/plugins/remote_blast/images/down_arrow.png
- src/plugins/remote_blast/images/remote_db_request.png → src/plugins/remote_blast/images/light/remote_db_request.png
- − src/plugins/remote_blast/images/up_arrow.png
- − src/plugins/remote_blast/remote_blast.pri
- − src/plugins/remote_blast/remote_blast.pro
- src/plugins/remote_blast/remote_blast.qrc
- src/plugins/remote_blast/src/BlastQuery.cpp
- src/plugins/remote_blast/src/BlastQuery.h
- src/plugins/remote_blast/src/DBRequestFactory.h
- src/plugins/remote_blast/src/HttpRequest.h
- src/plugins/remote_blast/src/HttpRequestBLAST.cpp
- src/plugins/remote_blast/src/RemoteBLASTConsts.cpp
- src/plugins/remote_blast/src/RemoteBLASTConsts.h
- src/plugins/remote_blast/src/RemoteBLASTPlugin.cpp
- src/plugins/remote_blast/src/RemoteBLASTPlugin.h
- src/plugins/remote_blast/src/RemoteBLASTPluginTests.cpp
- src/plugins/remote_blast/src/RemoteBLASTPluginTests.h
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairToAnnotationsTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairToAnnotationsTask.h
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairsToAnnotationsTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTPrimerPairsToAnnotationsTask.h
- src/plugins/remote_blast/src/RemoteBLASTTask.cpp
- src/plugins/remote_blast/src/RemoteBLASTTask.h
- src/plugins/remote_blast/src/RemoteBLASTWorker.cpp
- src/plugins/remote_blast/src/RemoteBLASTWorker.h
- src/plugins/remote_blast/src/SendSelectionDialog.cpp
- src/plugins/remote_blast/src/SendSelectionDialog.h
- src/plugins/remote_blast/transl/russian.ts
- src/plugins/remote_blast/transl/turkish.ts
- + src/plugins/repeat_finder/images/dark/repeats.png
- + src/plugins/repeat_finder/images/dark/repeats_tandem.png
- src/plugins/repeat_finder/images/repeats.png → src/plugins/repeat_finder/images/light/repeats.png
- src/plugins/repeat_finder/images/repeats_tandem.png → src/plugins/repeat_finder/images/light/repeats_tandem.png
- − src/plugins/repeat_finder/repeat_finder.pri
- − src/plugins/repeat_finder/repeat_finder.pro
- src/plugins/repeat_finder/repeat_finder.qrc
- src/plugins/repeat_finder/src/FindRepeatsDialog.cpp
- src/plugins/repeat_finder/src/FindRepeatsDialog.h
- src/plugins/repeat_finder/src/FindRepeatsTask.cpp
- src/plugins/repeat_finder/src/FindRepeatsTask.h
- src/plugins/repeat_finder/src/FindTandemsDialog.cpp
- src/plugins/repeat_finder/src/FindTandemsDialog.h
- src/plugins/repeat_finder/src/RFBase.cpp
- src/plugins/repeat_finder/src/RFBase.h
- src/plugins/repeat_finder/src/RFConstants.h
- src/plugins/repeat_finder/src/RFDiagonal.cpp
- src/plugins/repeat_finder/src/RFDiagonal.h
- src/plugins/repeat_finder/src/RFSArray.cpp
- src/plugins/repeat_finder/src/RFSArray.h
- src/plugins/repeat_finder/src/RFSArrayWK.cpp
- src/plugins/repeat_finder/src/RFSArrayWK.h
- src/plugins/repeat_finder/src/RFTaskFactory.cpp
- src/plugins/repeat_finder/src/RFTaskFactory.h
- src/plugins/repeat_finder/src/RF_BitMask.h
- src/plugins/repeat_finder/src/RF_SArray_TandemFinder.cpp
- src/plugins/repeat_finder/src/RF_SArray_TandemFinder.h
- src/plugins/repeat_finder/src/RF_SuffixArray.cpp
- src/plugins/repeat_finder/src/RF_SuffixArray.h
- src/plugins/repeat_finder/src/RepeatFinderPlugin.cpp
- src/plugins/repeat_finder/src/RepeatFinderPlugin.h
- src/plugins/repeat_finder/src/RepeatFinderTests.cpp
- src/plugins/repeat_finder/src/RepeatFinderTests.h
- src/plugins/repeat_finder/src/RepeatQuery.cpp
- src/plugins/repeat_finder/src/RepeatQuery.h
- src/plugins/repeat_finder/src/RepeatWorker.cpp
- src/plugins/repeat_finder/src/RepeatWorker.h
- src/plugins/repeat_finder/src/TandemQuery.cpp
- src/plugins/repeat_finder/src/TandemQuery.h
- src/plugins/repeat_finder/transl/russian.ts
- src/plugins/repeat_finder/transl/turkish.ts
- − src/plugins/smith_waterman/smith_waterman.pri
- − src/plugins/smith_waterman/smith_waterman.pro
- src/plugins/smith_waterman/src/PairAlignSequences.cpp
- src/plugins/smith_waterman/src/PairAlignSequences.h
- src/plugins/smith_waterman/src/PairwiseAlignmentSmithWatermanGUIExtension.cpp
- src/plugins/smith_waterman/src/PairwiseAlignmentSmithWatermanGUIExtension.h
- src/plugins/smith_waterman/src/SWAlgorithmPlugin.cpp
- src/plugins/smith_waterman/src/SWAlgorithmPlugin.h
- src/plugins/smith_waterman/src/SWAlgorithmTask.cpp
- src/plugins/smith_waterman/src/SWAlgorithmTask.h
- src/plugins/smith_waterman/src/SWQuery.cpp
- src/plugins/smith_waterman/src/SWQuery.h
- src/plugins/smith_waterman/src/SWTaskFactory.cpp
- src/plugins/smith_waterman/src/SWTaskFactory.h
- src/plugins/smith_waterman/src/SWWorker.cpp
- src/plugins/smith_waterman/src/SWWorker.h
- src/plugins/smith_waterman/src/SmithWatermanAlgorithm.cpp
- src/plugins/smith_waterman/src/SmithWatermanAlgorithm.h
- src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.cpp
- src/plugins/smith_waterman/src/SmithWatermanAlgorithmSSE2.h
- src/plugins/smith_waterman/src/SmithWatermanTests.cpp
- src/plugins/smith_waterman/src/SmithWatermanTests.h
- src/plugins/smith_waterman/transl/russian.ts
- src/plugins/smith_waterman/transl/turkish.ts
- src/plugins/test_runner/src/ExcludeReasonDialog.cpp
- src/plugins/test_runner/src/ExcludeReasonDialog.h
- src/plugins/test_runner/src/GTestScriptWrapper.cpp
- src/plugins/test_runner/src/GTestScriptWrapper.h
- src/plugins/test_runner/src/TestRunnerPlugin.cpp
- src/plugins/test_runner/src/TestRunnerPlugin.h
- src/plugins/test_runner/src/TestViewController.cpp
- src/plugins/test_runner/src/TestViewController.h
- src/plugins/test_runner/src/TestViewReporter.cpp
- src/plugins/test_runner/src/TestViewReporter.h
- − src/plugins/test_runner/test_runner.pri
- − src/plugins/test_runner/test_runner.pro
- src/plugins/test_runner/transl/russian.ts
- src/plugins/test_runner/transl/turkish.ts
- + src/plugins/weight_matrix/images/dark/weight_matrix.png
- src/plugins/weight_matrix/images/weight_matrix.png → src/plugins/weight_matrix/images/light/weight_matrix.png
- src/plugins/weight_matrix/src/PMatrixFormat.cpp
- src/plugins/weight_matrix/src/PMatrixFormat.h
- src/plugins/weight_matrix/src/PWMBuildDialogController.cpp
- src/plugins/weight_matrix/src/PWMBuildDialogController.h
- src/plugins/weight_matrix/src/PWMJASPARDialogController.cpp
- src/plugins/weight_matrix/src/PWMJASPARDialogController.h
- src/plugins/weight_matrix/src/PWMSearchDialogController.cpp
- src/plugins/weight_matrix/src/PWMSearchDialogController.h
- src/plugins/weight_matrix/src/SetParametersDialogController.cpp
- src/plugins/weight_matrix/src/SetParametersDialogController.h
- src/plugins/weight_matrix/src/ViewMatrixDialogController.cpp
- src/plugins/weight_matrix/src/ViewMatrixDialogController.h
- src/plugins/weight_matrix/src/WMQuery.cpp
- src/plugins/weight_matrix/src/WMQuery.h
- src/plugins/weight_matrix/src/WeightMatrixAlgorithm.cpp
- src/plugins/weight_matrix/src/WeightMatrixAlgorithm.h
- src/plugins/weight_matrix/src/WeightMatrixBuildWorker.cpp
- src/plugins/weight_matrix/src/WeightMatrixIO.cpp
- src/plugins/weight_matrix/src/WeightMatrixIO.h
- src/plugins/weight_matrix/src/WeightMatrixIOWorkers.cpp
- src/plugins/weight_matrix/src/WeightMatrixIOWorkers.h
- src/plugins/weight_matrix/src/WeightMatrixPlugin.cpp
- src/plugins/weight_matrix/src/WeightMatrixPlugin.h
- src/plugins/weight_matrix/src/WeightMatrixSearchTask.cpp
- src/plugins/weight_matrix/src/WeightMatrixSearchTask.h
- src/plugins/weight_matrix/src/WeightMatrixSearchWorker.cpp
- src/plugins/weight_matrix/src/WeightMatrixWorkers.h
- src/plugins/weight_matrix/transl/russian.ts
- src/plugins/weight_matrix/transl/turkish.ts
- − src/plugins/weight_matrix/weight_matrix.pri
- − src/plugins/weight_matrix/weight_matrix.pro
- src/plugins/weight_matrix/weight_matrix.qrc
- − src/plugins/workflow_designer/images/checked_tag.png
- − src/plugins/workflow_designer/images/clipboard.png
- + src/plugins/workflow_designer/images/dark/breakpoint.png
- + src/plugins/workflow_designer/images/dark/dashboard.png
- + src/plugins/workflow_designer/images/dark/external_cmd_tool.png
- + src/plugins/workflow_designer/images/dark/external_cmd_tool_add.png
- + src/plugins/workflow_designer/images/dark/fileopen.png
- + src/plugins/workflow_designer/images/dark/galaxy.png
- + src/plugins/workflow_designer/images/dark/green_circle.png
- + src/plugins/workflow_designer/images/dark/highlight_item.png
- + src/plugins/workflow_designer/images/dark/leftarrow.png
- + src/plugins/workflow_designer/images/dark/pause.png
- + src/plugins/workflow_designer/images/dark/rot_cur.png
- + src/plugins/workflow_designer/images/dark/run.png
- + src/plugins/workflow_designer/images/dark/script.png
- + src/plugins/workflow_designer/images/dark/script_edit.png
- + src/plugins/workflow_designer/images/dark/stopTask.png
- + src/plugins/workflow_designer/images/dark/wd.png
- + src/plugins/workflow_designer/images/dark/wizard.png
- − src/plugins/workflow_designer/images/delete_all_breakpoints.png
- − src/plugins/workflow_designer/images/delete_selected_breakpoints.png
- − src/plugins/workflow_designer/images/editpaste.png
- − src/plugins/workflow_designer/images/editredo.png
- − src/plugins/workflow_designer/images/editundo.png
- − src/plugins/workflow_designer/images/export.png
- src/plugins/workflow_designer/images/breakpoint.png → src/plugins/workflow_designer/images/light/breakpoint.png
- src/plugins/workflow_designer/images/dashboard.png → src/plugins/workflow_designer/images/light/dashboard.png
- src/plugins/workflow_designer/images/external_cmd_tool.png → src/plugins/workflow_designer/images/light/external_cmd_tool.png
- src/plugins/workflow_designer/images/external_cmd_tool_add.png → src/plugins/workflow_designer/images/light/external_cmd_tool_add.png
- src/plugins/workflow_designer/images/fileopen.png → src/plugins/workflow_designer/images/light/fileopen.png
- src/plugins/workflow_designer/images/galaxy.png → src/plugins/workflow_designer/images/light/galaxy.png
- src/plugins/workflow_designer/images/green_circle.png → src/plugins/workflow_designer/images/light/green_circle.png
- src/plugins/workflow_designer/images/highlight_item.png → src/plugins/workflow_designer/images/light/highlight_item.png
- src/plugins/workflow_designer/images/leftarrow.png → src/plugins/workflow_designer/images/light/leftarrow.png
- src/plugins/workflow_designer/images/pause.png → src/plugins/workflow_designer/images/light/pause.png
- src/plugins/workflow_designer/images/rot_cur.png → src/plugins/workflow_designer/images/light/rot_cur.png
- src/plugins/workflow_designer/images/run.png → src/plugins/workflow_designer/images/light/run.png
- src/plugins/workflow_designer/images/script.png → src/plugins/workflow_designer/images/light/script.png
- src/plugins/workflow_designer/images/script_edit.png → src/plugins/workflow_designer/images/light/script_edit.png
- src/plugins/workflow_designer/images/stopTask.png → src/plugins/workflow_designer/images/light/stopTask.png
- src/plugins/workflow_designer/images/wd.png → src/plugins/workflow_designer/images/light/wd.png
- src/plugins/workflow_designer/images/wizard.png → src/plugins/workflow_designer/images/light/wizard.png
- − src/plugins/workflow_designer/images/mag_circle.png
- src/plugins/workflow_designer/images/next_step.png
- − src/plugins/workflow_designer/images/rot_arrow.png
- − src/plugins/workflow_designer/images/rot_cur2.png
- − src/plugins/workflow_designer/images/sendtoback.png
- − src/plugins/workflow_designer/images/settings.png
- − src/plugins/workflow_designer/images/tag.png
- src/plugins/workflow_designer/src/ActorCfgFilterProxyModel.cpp
- src/plugins/workflow_designer/src/ActorCfgFilterProxyModel.h
- src/plugins/workflow_designer/src/ActorCfgModel.cpp
- src/plugins/workflow_designer/src/ActorCfgModel.h
- src/plugins/workflow_designer/src/BreakpointManagerView.cpp
- src/plugins/workflow_designer/src/BreakpointManagerView.h
- src/plugins/workflow_designer/src/ChooseItemDialog.cpp
- src/plugins/workflow_designer/src/ChooseItemDialog.h
- src/plugins/workflow_designer/src/CreateScriptWorker.cpp
- src/plugins/workflow_designer/src/CreateScriptWorker.h
- src/plugins/workflow_designer/src/DashboardsManagerDialog.cpp
- src/plugins/workflow_designer/src/DashboardsManagerDialog.h
- src/plugins/workflow_designer/src/GalaxyConfigConfigurationDialogImpl.cpp
- src/plugins/workflow_designer/src/GalaxyConfigConfigurationDialogImpl.h
- src/plugins/workflow_designer/src/InvestigationDataModel.cpp
- src/plugins/workflow_designer/src/InvestigationDataModel.h
- src/plugins/workflow_designer/src/ItemViewStyle.cpp
- src/plugins/workflow_designer/src/ItemViewStyle.h
- src/plugins/workflow_designer/src/SampleActionsManager.cpp
- src/plugins/workflow_designer/src/SampleActionsManager.h
- src/plugins/workflow_designer/src/SceneSerializer.cpp
- src/plugins/workflow_designer/src/SceneSerializer.h
- src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.cpp
- src/plugins/workflow_designer/src/SchemaAliasesConfigurationDialogImpl.h
- src/plugins/workflow_designer/src/StartupDialog.cpp
- src/plugins/workflow_designer/src/StartupDialog.h
- src/plugins/workflow_designer/src/TableViewTabKey.cpp
- src/plugins/workflow_designer/src/TableViewTabKey.h
- src/plugins/workflow_designer/src/WorkflowDesignerPlugin.cpp
- src/plugins/workflow_designer/src/WorkflowDesignerPlugin.h
- src/plugins/workflow_designer/src/WorkflowDocument.cpp
- src/plugins/workflow_designer/src/WorkflowDocument.h
- src/plugins/workflow_designer/src/WorkflowEditor.cpp
- src/plugins/workflow_designer/src/WorkflowEditor.h
- src/plugins/workflow_designer/src/WorkflowEditorDelegates.cpp
- src/plugins/workflow_designer/src/WorkflowEditorDelegates.h
- src/plugins/workflow_designer/src/WorkflowInvestigationWidgetsController.cpp
- src/plugins/workflow_designer/src/WorkflowInvestigationWidgetsController.h
- src/plugins/workflow_designer/src/WorkflowMetaDialog.cpp
- src/plugins/workflow_designer/src/WorkflowMetaDialog.h
- src/plugins/workflow_designer/src/WorkflowPalette.cpp
- src/plugins/workflow_designer/src/WorkflowPalette.h
- src/plugins/workflow_designer/src/WorkflowSamples.cpp
- src/plugins/workflow_designer/src/WorkflowSamples.h
- src/plugins/workflow_designer/src/WorkflowSceneIOTasks.cpp
- src/plugins/workflow_designer/src/WorkflowSceneIOTasks.h
- src/plugins/workflow_designer/src/WorkflowSettingsController.cpp
- src/plugins/workflow_designer/src/WorkflowSettingsController.h
- src/plugins/workflow_designer/src/WorkflowTabView.cpp
- src/plugins/workflow_designer/src/WorkflowTabView.h
- src/plugins/workflow_designer/src/WorkflowViewController.cpp
- src/plugins/workflow_designer/src/WorkflowViewController.h
- src/plugins/workflow_designer/src/WorkflowViewItems.cpp
- src/plugins/workflow_designer/src/WorkflowViewItems.h
- src/plugins/workflow_designer/src/cmdline/GalaxyConfigTask.cpp
- src/plugins/workflow_designer/src/cmdline/GalaxyConfigTask.h
- src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.cpp
- src/plugins/workflow_designer/src/cmdline/WorkflowCMDLineTasks.h
- src/plugins/workflow_designer/src/debug_messages_translation/AnnotationsMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/AnnotationsMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/AssemblyMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/AssemblyMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/BaseMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/BaseMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/MultipleAlignmentMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/MultipleAlignmentMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/SequenceMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/SequenceMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/VariationTrackMessageTranslator.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/VariationTrackMessageTranslator.h
- src/plugins/workflow_designer/src/debug_messages_translation/WorkflowDebugMessageParserImpl.cpp
- src/plugins/workflow_designer/src/debug_messages_translation/WorkflowDebugMessageParserImpl.h
- src/plugins/workflow_designer/src/library/AminoTranslationWorker.cpp
- src/plugins/workflow_designer/src/library/AminoTranslationWorker.h
- src/plugins/workflow_designer/src/library/AssemblyToSequenceWorker.cpp
- src/plugins/workflow_designer/src/library/AssemblyToSequenceWorker.h
- src/plugins/workflow_designer/src/library/BaseDocWriter.cpp
- src/plugins/workflow_designer/src/library/BaseDocWriter.h
- src/plugins/workflow_designer/src/library/CDSearchWorker.cpp
- src/plugins/workflow_designer/src/library/CDSearchWorker.h
- src/plugins/workflow_designer/src/library/CfgExternalToolModel.cpp
- src/plugins/workflow_designer/src/library/CfgExternalToolModel.h
- src/plugins/workflow_designer/src/library/CmdlineBasedWorkerValidator.cpp
- src/plugins/workflow_designer/src/library/CmdlineBasedWorkerValidator.h
- src/plugins/workflow_designer/src/library/ConvertFilesFormatWorker.cpp
- src/plugins/workflow_designer/src/library/ConvertFilesFormatWorker.h
- src/plugins/workflow_designer/src/library/ConvertSnpeffVariationsToAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/ConvertSnpeffVariationsToAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/CoreLib.cpp
- src/plugins/workflow_designer/src/library/CoreLib.h
- src/plugins/workflow_designer/src/library/CustomExternalToolLogParser.h
- src/plugins/workflow_designer/src/library/CustomExternalToolRunTaskHelper.h
- src/plugins/workflow_designer/src/library/DocActors.cpp
- src/plugins/workflow_designer/src/library/DocActors.h
- src/plugins/workflow_designer/src/library/DocWorkers.cpp
- src/plugins/workflow_designer/src/library/DocWorkers.h
- src/plugins/workflow_designer/src/library/ExternalProcessWorker.cpp
- src/plugins/workflow_designer/src/library/ExternalProcessWorker.h
- src/plugins/workflow_designer/src/library/ExtractAssemblyCoverageWorker.cpp
- src/plugins/workflow_designer/src/library/ExtractAssemblyCoverageWorker.h
- src/plugins/workflow_designer/src/library/ExtractConsensusWorker.cpp
- src/plugins/workflow_designer/src/library/ExtractConsensusWorker.h
- src/plugins/workflow_designer/src/library/ExtractMSAConsensusWorker.cpp
- src/plugins/workflow_designer/src/library/ExtractMSAConsensusWorker.h
- src/plugins/workflow_designer/src/library/FASTQWorkersLibrary.cpp
- src/plugins/workflow_designer/src/library/FASTQWorkersLibrary.h
- src/plugins/workflow_designer/src/library/FilterAnnotationsByQualifierWorker.cpp
- src/plugins/workflow_designer/src/library/FilterAnnotationsByQualifierWorker.h
- src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/FilterAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/FilterBamWorker.cpp
- src/plugins/workflow_designer/src/library/FilterBamWorker.h
- src/plugins/workflow_designer/src/library/FindWorker.cpp
- src/plugins/workflow_designer/src/library/FindWorker.h
- src/plugins/workflow_designer/src/library/GenericReadActor.cpp
- src/plugins/workflow_designer/src/library/GenericReadActor.h
- src/plugins/workflow_designer/src/library/GenericReadWorker.cpp
- src/plugins/workflow_designer/src/library/GenericReadWorker.h
- src/plugins/workflow_designer/src/library/GetFileListWorker.cpp
- src/plugins/workflow_designer/src/library/GetFileListWorker.h
- src/plugins/workflow_designer/src/library/GetReadListWorker.cpp
- src/plugins/workflow_designer/src/library/GetReadListWorker.h
- src/plugins/workflow_designer/src/library/GroupWorker.cpp
- src/plugins/workflow_designer/src/library/GroupWorker.h
- src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/ImportAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/IncludedProtoFactoryImpl.cpp
- src/plugins/workflow_designer/src/library/IncludedProtoFactoryImpl.h
- src/plugins/workflow_designer/src/library/MSA2SequenceWorker.cpp
- src/plugins/workflow_designer/src/library/MSA2SequenceWorker.h
- src/plugins/workflow_designer/src/library/MarkSequenceWorker.cpp
- src/plugins/workflow_designer/src/library/MarkSequenceWorker.h
- src/plugins/workflow_designer/src/library/MergeBamWorker.cpp
- src/plugins/workflow_designer/src/library/MergeBamWorker.h
- src/plugins/workflow_designer/src/library/MultiplexerWorker.cpp
- src/plugins/workflow_designer/src/library/MultiplexerWorker.h
- src/plugins/workflow_designer/src/library/PassFilterWorker.cpp
- src/plugins/workflow_designer/src/library/PassFilterWorker.h
- src/plugins/workflow_designer/src/library/ReadAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/ReadAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/ReadAssemblyWorker.cpp
- src/plugins/workflow_designer/src/library/ReadAssemblyWorker.h
- src/plugins/workflow_designer/src/library/ReadVariationWorker.cpp
- src/plugins/workflow_designer/src/library/ReadVariationWorker.h
- src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.cpp
- src/plugins/workflow_designer/src/library/RemoteDBFetcherWorker.h
- src/plugins/workflow_designer/src/library/RenameChromosomeInVariationWorker.cpp
- src/plugins/workflow_designer/src/library/RenameChromosomeInVariationWorker.h
- src/plugins/workflow_designer/src/library/ReverseComplementWorker.cpp
- src/plugins/workflow_designer/src/library/ReverseComplementWorker.h
- src/plugins/workflow_designer/src/library/RmdupBamWorker.cpp
- src/plugins/workflow_designer/src/library/RmdupBamWorker.h
- src/plugins/workflow_designer/src/library/SchemaWorker.cpp
- src/plugins/workflow_designer/src/library/SchemaWorker.h
- src/plugins/workflow_designer/src/library/ScriptWorker.cpp
- src/plugins/workflow_designer/src/library/ScriptWorker.h
- src/plugins/workflow_designer/src/library/SequenceQualityTrimWorker.cpp
- src/plugins/workflow_designer/src/library/SequenceQualityTrimWorker.h
- src/plugins/workflow_designer/src/library/SequenceSplitWorker.cpp
- src/plugins/workflow_designer/src/library/SequenceSplitWorker.h
- src/plugins/workflow_designer/src/library/SequencesToMSAWorker.cpp
- src/plugins/workflow_designer/src/library/SequencesToMSAWorker.h
- src/plugins/workflow_designer/src/library/SortBamWorker.cpp
- src/plugins/workflow_designer/src/library/SortBamWorker.h
- src/plugins/workflow_designer/src/library/StatisticWorkers.cpp
- src/plugins/workflow_designer/src/library/StatisticWorkers.h
- src/plugins/workflow_designer/src/library/Text2SequenceWorker.cpp
- src/plugins/workflow_designer/src/library/Text2SequenceWorker.h
- src/plugins/workflow_designer/src/library/WriteAnnotationsWorker.cpp
- src/plugins/workflow_designer/src/library/WriteAnnotationsWorker.h
- src/plugins/workflow_designer/src/library/WriteAssemblyWorkers.cpp
- src/plugins/workflow_designer/src/library/WriteAssemblyWorkers.h
- src/plugins/workflow_designer/src/library/WriteVariationWorker.cpp
- src/plugins/workflow_designer/src/library/WriteVariationWorker.h
- src/plugins/workflow_designer/src/library/create_cmdline_based_worker/CreateCmdlineBasedWorkerWizard.cpp
- src/plugins/workflow_designer/src/library/create_cmdline_based_worker/CreateCmdlineBasedWorkerWizard.h
- src/plugins/workflow_designer/src/tasks/ReadAssemblyTask.cpp
- src/plugins/workflow_designer/src/tasks/ReadAssemblyTask.h
- src/plugins/workflow_designer/src/tasks/RenameChromosomeInVariationTask.cpp
- src/plugins/workflow_designer/src/tasks/RenameChromosomeInVariationTask.h
- src/plugins/workflow_designer/src/tasks/SequenceQualityTrimTask.cpp
- src/plugins/workflow_designer/src/tasks/SequenceQualityTrimTask.h
- src/plugins/workflow_designer/src/util/CustomWorkerUtils.cpp
- src/plugins/workflow_designer/src/util/CustomWorkerUtils.h
- src/plugins/workflow_designer/src/util/DatasetValidator.cpp
- src/plugins/workflow_designer/src/util/DatasetValidator.h
- src/plugins/workflow_designer/src/util/DatasetsCountValidator.cpp
- src/plugins/workflow_designer/src/util/DatasetsCountValidator.h
- src/plugins/workflow_designer/src/util/GrouperActionUtils.cpp
- src/plugins/workflow_designer/src/util/GrouperActionUtils.h
- src/plugins/workflow_designer/src/util/RequiredSlotsValidator.cpp
- src/plugins/workflow_designer/src/util/RequiredSlotsValidator.h
- src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.cpp
- src/plugins/workflow_designer/src/util/SaveSchemaImageUtils.h
- src/plugins/workflow_designer/src/util/WorkerNameValidator.cpp
- src/plugins/workflow_designer/src/util/WorkerNameValidator.h
- src/plugins/workflow_designer/src/util/WriteAnnotationsValidator.cpp
- src/plugins/workflow_designer/src/util/WriteAnnotationsValidator.h
- src/plugins/workflow_designer/src/util/WriteSequenceValidator.cpp
- src/plugins/workflow_designer/src/util/WriteSequenceValidator.h
- src/plugins/workflow_designer/transl/russian.ts
- src/plugins/workflow_designer/transl/turkish.ts
- − src/plugins/workflow_designer/workflow_designer.pri
- − src/plugins/workflow_designer/workflow_designer.pro
- src/plugins/workflow_designer/workflow_designer.qrc
- − src/plugins/workflow_dump/workflow_dump.pri
- − src/plugins/workflow_dump/workflow_dump.pro
- − src/plugins_3rdparty/ball/ball.pri
- − src/plugins_3rdparty/ball/ball.pro
- src/plugins_3rdparty/ball/src/BallPlugin.cpp
- src/plugins_3rdparty/ball/src/BallPlugin.h
- src/plugins_3rdparty/ball/src/SAS.cpp
- src/plugins_3rdparty/ball/src/SAS.h
- src/plugins_3rdparty/ball/src/SES.cpp
- src/plugins_3rdparty/ball/src/SES.h
- src/plugins_3rdparty/ball/transl/turkish.ts
- − src/plugins_3rdparty/gor4/gor4.pri
- − src/plugins_3rdparty/gor4/gor4.pro
- src/plugins_3rdparty/gor4/src/GorIVAlgTask.cpp
- src/plugins_3rdparty/gor4/src/GorIVAlgTask.h
- src/plugins_3rdparty/gor4/src/GorIVPlugin.cpp
- src/plugins_3rdparty/gor4/src/GorIVPlugin.h
- src/plugins_3rdparty/gor4/transl/turkish.ts
- − src/plugins_3rdparty/hmm2/hmm2.pri
- − src/plugins_3rdparty/hmm2/hmm2.pro
- src/plugins_3rdparty/hmm2/hmm2.qrc
- + src/plugins_3rdparty/hmm2/images/dark/hmmer2.png
- − src/plugins_3rdparty/hmm2/images/hmmer_32.png
- − src/plugins_3rdparty/hmm2/images/hmmer_64.png
- src/plugins_3rdparty/hmm2/images/hmmer_16.png → src/plugins_3rdparty/hmm2/images/light/hmmer2.png
- src/plugins_3rdparty/hmm2/src/HMMIO.cpp
- src/plugins_3rdparty/hmm2/src/HMMIO.h
- src/plugins_3rdparty/hmm2/src/HMMIOWorker.cpp
- src/plugins_3rdparty/hmm2/src/HMMIOWorker.h
- src/plugins_3rdparty/hmm2/src/TaskLocalStorage.cpp
- src/plugins_3rdparty/hmm2/src/TaskLocalStorage.h
- src/plugins_3rdparty/hmm2/src/uHMMPlugin.cpp
- src/plugins_3rdparty/hmm2/src/uHMMPlugin.h
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildDialogController.cpp
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildDialogController.h
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildWorker.cpp
- src/plugins_3rdparty/hmm2/src/u_build/HMMBuildWorker.h
- src/plugins_3rdparty/hmm2/src/u_calibrate/HMMCalibrateDialogController.cpp
- src/plugins_3rdparty/hmm2/src/u_calibrate/HMMCalibrateDialogController.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchDialogController.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchQDActor.cpp
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchQDActor.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchTask.cpp
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchTask.h
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchWorker.cpp
- src/plugins_3rdparty/hmm2/src/u_search/HMMSearchWorker.h
- src/plugins_3rdparty/hmm2/src/u_tests/uhmmerTests.cpp
- src/plugins_3rdparty/hmm2/transl/russian.ts
- src/plugins_3rdparty/hmm2/transl/turkish.ts
- − src/plugins_3rdparty/phylip/phylip.pri
- − src/plugins_3rdparty/phylip/phylip.pro
- src/plugins_3rdparty/phylip/src/DistanceMatrix.cpp
- src/plugins_3rdparty/phylip/src/DistanceMatrix.h
- src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.cpp
- src/plugins_3rdparty/phylip/src/NeighborJoinAdapter.h
- src/plugins_3rdparty/phylip/src/NeighborJoinWidget.cpp
- src/plugins_3rdparty/phylip/src/NeighborJoinWidget.h
- src/plugins_3rdparty/phylip/src/PhylipCmdlineTask.cpp
- src/plugins_3rdparty/phylip/src/PhylipCmdlineTask.h
- src/plugins_3rdparty/phylip/src/PhylipPlugin.cpp
- src/plugins_3rdparty/phylip/src/PhylipPlugin.h
- src/plugins_3rdparty/phylip/src/PhylipPluginTests.cpp
- src/plugins_3rdparty/phylip/src/PhylipPluginTests.h
- src/plugins_3rdparty/phylip/src/PhylipTask.cpp
- src/plugins_3rdparty/phylip/src/PhylipTask.h
- src/plugins_3rdparty/phylip/src/SeqBootAdapter.cpp
- src/plugins_3rdparty/phylip/src/SeqBootAdapter.h
- src/plugins_3rdparty/phylip/transl/russian.ts
- src/plugins_3rdparty/phylip/transl/turkish.ts
- + src/plugins_3rdparty/primer3/images/dark/primer3.png
- src/plugins_3rdparty/primer3/images/primer3.png → src/plugins_3rdparty/primer3/images/light/primer3.png
- − src/plugins_3rdparty/primer3/primer3.pri
- − src/plugins_3rdparty/primer3/primer3.pro
- src/plugins_3rdparty/primer3/primer3.qrc
- src/plugins_3rdparty/primer3/src/Primer3Dialog.cpp
- src/plugins_3rdparty/primer3/src/Primer3Dialog.h
- src/plugins_3rdparty/primer3/src/Primer3Plugin.cpp
- src/plugins_3rdparty/primer3/src/Primer3Plugin.h
- src/plugins_3rdparty/primer3/src/Primer3Query.cpp
- src/plugins_3rdparty/primer3/src/Primer3Query.h
- src/plugins_3rdparty/primer3/src/Primer3Tests.cpp
- src/plugins_3rdparty/primer3/src/Primer3Tests.h
- src/plugins_3rdparty/primer3/src/primer3_core/read_boulder.c
- src/plugins_3rdparty/primer3/src/task/CheckComplementTask.cpp
- src/plugins_3rdparty/primer3/src/task/CheckComplementTask.h
- src/plugins_3rdparty/primer3/src/task/FindExonRegionsTask.cpp
- src/plugins_3rdparty/primer3/src/task/FindExonRegionsTask.h
- src/plugins_3rdparty/primer3/src/task/Primer3Task.cpp
- src/plugins_3rdparty/primer3/src/task/Primer3Task.h
- src/plugins_3rdparty/primer3/src/task/Primer3TaskSettings.cpp
- src/plugins_3rdparty/primer3/src/task/Primer3TaskSettings.h
- src/plugins_3rdparty/primer3/src/task/PrimerPair.cpp
- src/plugins_3rdparty/primer3/src/task/PrimerPair.h
- src/plugins_3rdparty/primer3/src/task/PrimerSingle.cpp
- src/plugins_3rdparty/primer3/src/task/PrimerSingle.h
- src/plugins_3rdparty/primer3/src/task/ProcessPrimer3ResultsToAnnotationsTask.cpp
- src/plugins_3rdparty/primer3/src/task/ProcessPrimer3ResultsToAnnotationsTask.h
- src/plugins_3rdparty/primer3/transl/russian.ts
- src/plugins_3rdparty/primer3/transl/turkish.ts
- − src/plugins_3rdparty/psipred/psipred.pri
- − src/plugins_3rdparty/psipred/psipred.pro
- src/plugins_3rdparty/psipred/src/PsipredAlgTask.cpp
- src/plugins_3rdparty/psipred/src/PsipredAlgTask.h
- src/plugins_3rdparty/psipred/src/PsipredPlugin.cpp
- src/plugins_3rdparty/psipred/src/PsipredPlugin.h
- src/plugins_3rdparty/psipred/transl/turkish.ts
- − src/plugins_3rdparty/ptools/ptools.pri
- − src/plugins_3rdparty/ptools/ptools.pro
- src/plugins_3rdparty/ptools/src/PToolsAligner.cpp
- src/plugins_3rdparty/ptools/src/PToolsAligner.h
- src/plugins_3rdparty/ptools/src/PToolsPlugin.cpp
- src/plugins_3rdparty/ptools/src/PToolsPlugin.h
- src/plugins_3rdparty/ptools/src/PToolsTests.cpp
- src/plugins_3rdparty/ptools/src/PToolsTests.h
- src/plugins_3rdparty/ptools/transl/russian.ts
- src/plugins_3rdparty/ptools/transl/turkish.ts
- + src/plugins_3rdparty/sitecon/images/dark/sitecon.png
- src/plugins_3rdparty/sitecon/images/sitecon.png → src/plugins_3rdparty/sitecon/images/light/sitecon.png
- − src/plugins_3rdparty/sitecon/sitecon.pri
- − src/plugins_3rdparty/sitecon/sitecon.pro
- src/plugins_3rdparty/sitecon/sitecon.qrc
- src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.cpp
- src/plugins_3rdparty/sitecon/src/DIPropertiesSitecon.h
- src/plugins_3rdparty/sitecon/src/DIPropertiesTests.cpp
- src/plugins_3rdparty/sitecon/src/DIPropertiesTests.h
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.cpp
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.h
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.cpp
- src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.h
- src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.cpp
- src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.h
- src/plugins_3rdparty/sitecon/src/SiteconBuildWorker.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIO.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIO.h
- src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.cpp
- src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.h
- src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp
- src/plugins_3rdparty/sitecon/src/SiteconPlugin.h
- src/plugins_3rdparty/sitecon/src/SiteconQuery.cpp
- src/plugins_3rdparty/sitecon/src/SiteconQuery.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.cpp
- src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchTask.cpp
- src/plugins_3rdparty/sitecon/src/SiteconSearchTask.h
- src/plugins_3rdparty/sitecon/src/SiteconSearchWorker.cpp
- src/plugins_3rdparty/sitecon/src/SiteconWorkers.h
- src/plugins_3rdparty/sitecon/transl/russian.ts
- src/plugins_3rdparty/sitecon/transl/turkish.ts
- src/plugins_3rdparty/umuscle/images/muscle_16.png → src/plugins_3rdparty/umuscle/images/muscle.png
- src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp
- src/plugins_3rdparty/umuscle/src/MuscleAdapter.h
- src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.cpp
- src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.h
- src/plugins_3rdparty/umuscle/src/MuscleParallel.cpp
- src/plugins_3rdparty/umuscle/src/MuscleParallel.h
- src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp
- src/plugins_3rdparty/umuscle/src/MusclePlugin.h
- src/plugins_3rdparty/umuscle/src/MuscleTask.cpp
- src/plugins_3rdparty/umuscle/src/MuscleTask.h
- src/plugins_3rdparty/umuscle/src/MuscleUtils.cpp
- src/plugins_3rdparty/umuscle/src/MuscleUtils.h
- src/plugins_3rdparty/umuscle/src/MuscleWorkPool.cpp
- src/plugins_3rdparty/umuscle/src/MuscleWorkPool.h
- src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp
- src/plugins_3rdparty/umuscle/src/MuscleWorker.h
- src/plugins_3rdparty/umuscle/src/ProfileToProfileWorker.cpp
- src/plugins_3rdparty/umuscle/src/ProfileToProfileWorker.h
- src/plugins_3rdparty/umuscle/src/TaskLocalStorage.cpp
- src/plugins_3rdparty/umuscle/src/TaskLocalStorage.h
- src/plugins_3rdparty/umuscle/src/refinehorizP.cpp
- src/plugins_3rdparty/umuscle/src/refinevertP.cpp
- src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.cpp
- src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.h
- src/plugins_3rdparty/umuscle/transl/russian.ts
- src/plugins_3rdparty/umuscle/transl/turkish.ts
- − src/plugins_3rdparty/umuscle/umuscle.pri
- − src/plugins_3rdparty/umuscle/umuscle.pro
- src/plugins_3rdparty/umuscle/umuscle.qrc
- src/plugins_3rdparty/variants/src/AssemblySamtoolsMpileup.cpp
- src/plugins_3rdparty/variants/src/AssemblySamtoolsMpileup.h
- src/plugins_3rdparty/variants/src/SamtoolMpileupWorker.cpp
- src/plugins_3rdparty/variants/src/SamtoolMpileupWorker.h
- src/plugins_3rdparty/variants/src/SamtoolsPlugin.cpp
- src/plugins_3rdparty/variants/src/SamtoolsPlugin.h
- src/plugins_3rdparty/variants/transl/turkish.ts
- − src/plugins_3rdparty/variants/variants.pri
- − src/plugins_3rdparty/variants/variants.pro
- − src/plugins_checker/plugins_checker.pri
- − src/plugins_checker/plugins_checker.pro
- src/plugins_checker/src/Main.cpp
- − src/qmake_msvc_proj_x64.cmd
- − src/ugene_globals.pri
- − src/ugene_lib_common.pri
- − src/ugene_plugin_common.pri
- − src/ugene_plugin_descriptor.pri
- − src/ugene_version.pri
- src/ugenecl/src/DumpHelpTask.cpp
- src/ugenecl/src/DumpHelpTask.h
- src/ugenecl/src/DumpLicenseTask.cpp
- src/ugenecl/src/DumpLicenseTask.h
- src/ugenecl/src/DumpVersionTask.cpp
- src/ugenecl/src/DumpVersionTask.h
- src/ugenecl/src/Main.cpp
- src/ugenecl/src/TaskStatusBar.cpp
- src/ugenecl/src/TaskStatusBar.h
- src/ugenecl/src/TestStarter.cpp
- src/ugenecl/src/TestStarter.h
- − src/ugenecl/ugenecl.pri
- − src/ugenecl/ugenecl.pro
- src/ugenem/src/SendReportDialog.cpp
- src/ugenem/src/SendReportDialog.h
- src/ugenem/src/Utils.cpp
- src/ugenem/src/Utils.h
- src/ugenem/src/main.cpp
- − src/ugenem/ugenem.pro
- + src/ugeneui/dark/darkstyle.qrc
- + src/ugeneui/dark/darkstyle/darkstyle.qss
- + src/ugeneui/dark/darkstyle/icon_branch_closed.png
- + src/ugeneui/dark/darkstyle/icon_branch_end.png
- + src/ugeneui/dark/darkstyle/icon_branch_more.png
- + src/ugeneui/dark/darkstyle/icon_branch_open.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_checked.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_checked_disabled.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_checked_pressed.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_indeterminate.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_indeterminate_disabled.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_indeterminate_pressed.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_unchecked.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_unchecked_disabled.png
- + src/ugeneui/dark/darkstyle/icon_checkbox_unchecked_pressed.png
- + src/ugeneui/dark/darkstyle/icon_close.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_checked.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_checked_disabled.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_checked_pressed.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_unchecked.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_unchecked_disabled.png
- + src/ugeneui/dark/darkstyle/icon_radiobutton_unchecked_pressed.png
- + src/ugeneui/dark/darkstyle/icon_restore.png
- + src/ugeneui/dark/darkstyle/icon_tooltip_extend_horizontal.png
- + src/ugeneui/dark/darkstyle/icon_tooltip_extend_vertical.png
- + src/ugeneui/dark/darkstyle/icon_undock.png
- + src/ugeneui/dark/darkstyle/icon_vline.png
- src/ugeneui/html/version_news_en.html
- src/ugeneui/html/version_news_ru.html
- − src/ugeneui/images/add_existing_document.png
- − src/ugeneui/images/add_new_document.png
- − src/ugeneui/images/bin_empty.png
- + src/ugeneui/images/color_theme_pic.png
- + src/ugeneui/images/dark/cloud_connected.svg
- + src/ugeneui/images/dark/cloud_connecting.svg
- + src/ugeneui/images/dark/cloud_disabled.svg
- + src/ugeneui/images/dark/cloud_storage.svg
- + src/ugeneui/images/dark/color_theme_pic.png
- + src/ugeneui/images/dark/document.svg
- + src/ugeneui/images/dark/file_download.svg
- + src/ugeneui/images/dark/file_rename.svg
- + src/ugeneui/images/dark/file_share.svg
- + src/ugeneui/images/dark/file_upload.svg
- + src/ugeneui/images/dark/folder.svg
- + src/ugeneui/images/dark/folder_shared.svg
- + src/ugeneui/images/dark/group.svg
- + src/ugeneui/images/dark/login.svg
- + src/ugeneui/images/dark/logout.svg
- + src/ugeneui/images/dark/new_folder.svg
- + src/ugeneui/images/dark/preferences.png
- + src/ugeneui/images/dark/trash.svg
- + src/ugeneui/images/dark/ugene_splash.png
- + src/ugeneui/images/dark/web_link.svg
- − src/ugeneui/images/down.png
- src/ugeneui/images/cloud_connected.svg → src/ugeneui/images/light/cloud_connected.svg
- src/ugeneui/images/cloud_connecting.svg → src/ugeneui/images/light/cloud_connecting.svg
- src/ugeneui/images/cloud_disabled.svg → src/ugeneui/images/light/cloud_disabled.svg
- src/ugeneui/images/cloud_storage.svg → src/ugeneui/images/light/cloud_storage.svg
- + src/ugeneui/images/light/color_theme_pic.png
- src/ugeneui/images/document.svg → src/ugeneui/images/light/document.svg
- src/ugeneui/images/file_download.svg → src/ugeneui/images/light/file_download.svg
- src/ugeneui/images/file_rename.svg → src/ugeneui/images/light/file_rename.svg
- src/ugeneui/images/file_share.svg → src/ugeneui/images/light/file_share.svg
- src/ugeneui/images/file_upload.svg → src/ugeneui/images/light/file_upload.svg
- src/ugeneui/images/folder.svg → src/ugeneui/images/light/folder.svg
- src/ugeneui/images/folder_shared.svg → src/ugeneui/images/light/folder_shared.svg
- src/ugeneui/images/group.svg → src/ugeneui/images/light/group.svg
- src/ugeneui/images/login.svg → src/ugeneui/images/light/login.svg
- src/ugeneui/images/logout.svg → src/ugeneui/images/light/logout.svg
- src/ugeneui/images/new_folder.svg → src/ugeneui/images/light/new_folder.svg
- src/ugeneui/images/preferences.png → src/ugeneui/images/light/preferences.png
- src/ugeneui/images/trash.svg → src/ugeneui/images/light/trash.svg
- src/ugeneui/images/ugene_splash.png → src/ugeneui/images/light/ugene_splash.png
- src/ugeneui/images/web_link.svg → src/ugeneui/images/light/web_link.svg
- − src/ugeneui/images/net_settings.png
- + src/ugeneui/images/originals/ugene_512.png
- − src/ugeneui/images/paste.png
- − src/ugeneui/images/project_filter.png
- − src/ugeneui/images/project_save.png
- src/corelibs/U2Gui/images/save.png → src/ugeneui/images/save.png
- − src/ugeneui/images/script_registry.png
- − src/ugeneui/images/service.png
- src/ugeneui/images/ugene_16.png → src/ugeneui/images/ugene.png
- − src/ugeneui/images/ugene_32.xpm
- + src/ugeneui/images/ugene_512.png
- − src/ugeneui/images/up.png
- + src/ugeneui/images/welcome_page/dark/line.png
- + src/ugeneui/images/welcome_page/dark/social_icon_patreon.png
- src/ugeneui/images/welcome_page/line.png → src/ugeneui/images/welcome_page/light/line.png
- src/ugeneui/images/welcome_page/social_icon_patreon.png → src/ugeneui/images/welcome_page/light/social_icon_patreon.png
- src/ugeneui/src/Main.cpp
- src/ugeneui/src/app_settings/AppSettingsDialogController.cpp
- src/ugeneui/src/app_settings/AppSettingsDialogController.h
- src/ugeneui/src/app_settings/AppSettingsDialogTree.h
- src/ugeneui/src/app_settings/AppSettingsGUIImpl.cpp
- src/ugeneui/src/app_settings/AppSettingsGUIImpl.h
- src/ugeneui/src/app_settings/ResetSettingsMac.h
- src/ugeneui/src/app_settings/directories_settings/DirectoriesSettingsGUIController.cpp
- src/ugeneui/src/app_settings/directories_settings/DirectoriesSettingsGUIController.h
- src/ugeneui/src/app_settings/format_settings/FormatSettingsGUIController.cpp
- src/ugeneui/src/app_settings/format_settings/FormatSettingsGUIController.h
- src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.cpp
- src/ugeneui/src/app_settings/logview_settings/LogSettingsGUIController.h
- src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.cpp
- src/ugeneui/src/app_settings/network_settings/NetworkSettingsGUIController.h
- src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.cpp
- src/ugeneui/src/app_settings/resource_settings/ResourceSettingsGUIController.h
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h
- src/ugeneui/src/app_settings/user_apps_settings/UserApplicationsSettingsWidget.ui
- src/ugeneui/src/main_window/AboutDialogController.cpp
- src/ugeneui/src/main_window/AboutDialogController.h
- src/ugeneui/src/main_window/CheckUpdatesTask.cpp
- src/ugeneui/src/main_window/CheckUpdatesTask.h
- src/ugeneui/src/main_window/CreateDesktopShortcutTask.cpp
- src/ugeneui/src/main_window/CreateDesktopShortcutTask.h
- src/ugeneui/src/main_window/DockManagerImpl.cpp
- src/ugeneui/src/main_window/DockManagerImpl.h
- src/ugeneui/src/main_window/DockWidgetPainter.cpp
- src/ugeneui/src/main_window/DockWidgetPainter.h
- src/ugeneui/src/main_window/MDIManagerImpl.cpp
- src/ugeneui/src/main_window/MDIManagerImpl.h
- src/ugeneui/src/main_window/MainWindowImpl.cpp
- src/ugeneui/src/main_window/MainWindowImpl.h
- src/ugeneui/src/main_window/MenuManager.cpp
- src/ugeneui/src/main_window/MenuManager.h
- src/ugeneui/src/main_window/ShutdownTask.cpp
- src/ugeneui/src/main_window/ShutdownTask.h
- src/ugeneui/src/main_window/SplashScreen.cpp
- src/ugeneui/src/main_window/SplashScreen.h
- src/ugeneui/src/main_window/TmpDirChangeDialogController.cpp
- src/ugeneui/src/main_window/TmpDirChangeDialogController.h
- src/ugeneui/src/main_window/ToolBarManager.cpp
- src/ugeneui/src/main_window/ToolBarManager.h
- + src/ugeneui/src/main_window/styles/DarkStyle.cpp
- + src/ugeneui/src/main_window/styles/DarkStyle.h
- + src/ugeneui/src/main_window/styles/MacStyleFactory.h
- + src/ugeneui/src/main_window/styles/MacStyleFactory.mm
- src/ugeneui/src/main_window/ProxyStyle.cpp → src/ugeneui/src/main_window/styles/ProxyStyle.cpp
- src/ugeneui/src/main_window/ProxyStyle.h → src/ugeneui/src/main_window/styles/ProxyStyle.h
- + src/ugeneui/src/main_window/styles/StyleFactory.cpp
- + src/ugeneui/src/main_window/styles/StyleFactory.h
- + src/ugeneui/src/main_window/styles/WinStyleFactory.cpp
- + src/ugeneui/src/main_window/styles/WinStyleFactory.h
- src/ugeneui/src/plugin_viewer/PluginViewerController.cpp
- src/ugeneui/src/plugin_viewer/PluginViewerController.h
- src/ugeneui/src/plugin_viewer/PluginViewerImpl.cpp
- src/ugeneui/src/plugin_viewer/PluginViewerImpl.h
- src/ugeneui/src/project_support/DocumentFormatSelectorController.cpp
- src/ugeneui/src/project_support/DocumentFormatSelectorController.h
- src/ugeneui/src/project_support/DocumentProviderSelectorController.cpp
- src/ugeneui/src/project_support/DocumentProviderSelectorController.h
- src/ugeneui/src/project_support/DocumentReadingModeSelectorController.cpp
- src/ugeneui/src/project_support/DocumentReadingModeSelectorController.h
- src/ugeneui/src/project_support/ExportProjectDialogController.cpp
- src/ugeneui/src/project_support/ExportProjectDialogController.h
- src/ugeneui/src/project_support/MultipleDocumentsReadingModeSelectorController.cpp
- src/ugeneui/src/project_support/MultipleDocumentsReadingModeSelectorController.h
- src/ugeneui/src/project_support/ProjectImpl.cpp
- src/ugeneui/src/project_support/ProjectImpl.h
- src/ugeneui/src/project_support/ProjectLoaderImpl.cpp
- src/ugeneui/src/project_support/ProjectLoaderImpl.h
- src/ugeneui/src/project_support/ProjectServiceImpl.cpp
- src/ugeneui/src/project_support/ProjectServiceImpl.h
- src/ugeneui/src/project_support/ProjectTasksGui.cpp
- src/ugeneui/src/project_support/ProjectTasksGui.h
- src/ugeneui/src/project_support/SaveProjectDialog.ui
- src/ugeneui/src/project_view/BuiltInObjectViews.cpp
- src/ugeneui/src/project_view/ProjectViewImpl.cpp
- src/ugeneui/src/project_view/ProjectViewImpl.h
- + src/ugeneui/src/shtirlitz/ColorThemeWindow.cpp
- + src/ugeneui/src/shtirlitz/ColorThemeWindow.h
- + src/ugeneui/src/shtirlitz/ColorThemeWindow.ui
- src/ugeneui/src/shtirlitz/Shtirlitz.cpp
- src/ugeneui/src/shtirlitz/Shtirlitz.h
- src/ugeneui/src/shtirlitz/StatisticalReportController.cpp
- src/ugeneui/src/shtirlitz/StatisticalReportController.h
- src/ugeneui/src/task_view/TaskStatusBar.cpp
- src/ugeneui/src/task_view/TaskStatusBar.h
- src/ugeneui/src/task_view/TaskViewController.cpp
- src/ugeneui/src/task_view/TaskViewController.h
- src/ugeneui/src/update/UgeneUpdater.cpp
- src/ugeneui/src/update/UgeneUpdater.h
- src/ugeneui/src/welcome_page/WelcomePageMdi.cpp
- src/ugeneui/src/welcome_page/WelcomePageMdi.h
- src/ugeneui/src/welcome_page/WelcomePageMdiController.cpp
- src/ugeneui/src/welcome_page/WelcomePageMdiController.h
- src/ugeneui/src/welcome_page/WelcomePageWidget.cpp
- src/ugeneui/src/welcome_page/WelcomePageWidget.h
- src/ugeneui/src/workspace/CloudStorageDockWidget.cpp
- src/ugeneui/src/workspace/CloudStorageDockWidget.h
- src/ugeneui/src/workspace/CloudStorageService.cpp
- src/ugeneui/src/workspace/CloudStorageService.h
- src/ugeneui/src/workspace/KeycloakAuthenticator.cpp
- src/ugeneui/src/workspace/KeycloakAuthenticator.h
- src/ugeneui/src/workspace/WebSocketClientService.cpp
- src/ugeneui/src/workspace/WebSocketClientService.h
- src/ugeneui/src/workspace/WorkspaceConnectionStatusIcon.cpp
- src/ugeneui/src/workspace/WorkspaceConnectionStatusIcon.h
- src/ugeneui/src/workspace/WorkspaceService.cpp
- src/ugeneui/src/workspace/WorkspaceService.h
- src/ugeneui/transl/russian.ts
- src/ugeneui/transl/turkish.ts
- − src/ugeneui/ugeneui.pri
- − src/ugeneui/ugeneui.pro
- src/ugeneui/ugeneui.qrc
- tests/cmdline/common/convert-assembly/test_0001.xml
- tests/cmdline/common/convert-assembly/test_0005.xml
- tests/cmdline/common/simple/conversion/test_0006.xml
- tests/cmdline/common/simple/conversion/test_0007.xml
- + tests/doc_format/fpkm_tracking_format/valid_input/test_0006.xml
- tests/doc_format/genbank/annotations/qualifier/test_0008.xml
- + tests/doc_format/genbank/test_0011.xml
- + tests/doc_format/gff/negative/test_0011.xml
- + tests/doc_format/gtf/valid_input/test_0012.xml
- + tests/format_detection/test_0034.xml
- + tests/primer3/report_without_macros/test_0001.xml
- tests/regression/1195/test_0001.xml
- tests/regression/799/test_0001.xml
- + tests/regression/8070/test_0001.xml
- + tests/regression/8070/test_0002.xml
- + tests/regression/8088/test_8008.xml
- + tests/regression/8145/test_0001.xml
- + tests/unit_tests/ApiTest/datatype/features/FeaturesUnitTests.xml
- + tests/unit_tests/ApiTest/datatype/primers/PrimerDimersFinderUnitTests.xml
- − ugene.pri
- − ugene.pro


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ugene/-/commit/8f738cc40d313c46fcc81d1c1bec8872ec21d55f

-- 
View it on GitLab: https://salsa.debian.org/med-team/ugene/-/commit/8f738cc40d313c46fcc81d1c1bec8872ec21d55f
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