[med-svn] [Git][med-team/python-biom-format][master] 4 commits: Upload to unstable

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-biom-format


Commits:
edfa47e2 by Andreas Tille at 2026-05-20T11:42:52+02:00
Upload to unstable

- - - - -
845fd7fc by Andreas Tille at 2026-05-20T11:43:04+02:00
Forwarded patch

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c8e601a6 by Andreas Tille at 2026-05-20T11:44:23+02:00
Fix removal of unwanted files in /usr/lib/python3.14 Closes: #1137163

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91ec153a by Andreas Tille at 2026-05-20T12:22:10+02:00
Upload to unstable

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3 changed files:

- debian/changelog
- debian/patches/numpy-2.4.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,18 @@
-python-biom-format (2.1.17-2) UNRELEASED; urgency=medium
+python-biom-format (2.1.17-3) unstable; urgency=medium
+
+  * Fix removal of unwanted files in /usr/lib/python3.14
+    Closes: #1137163
+
+ -- Andreas Tille <tille at debian.org>  Wed, 20 May 2026 12:16:17 +0200
+
+python-biom-format (2.1.17-2) unstable; urgency=medium
 
   * cme fix dpkg-control
   * in1d was replaced by isin in numpy 2.4
     Closes: #1131071
   * Remove useless dist-info dir from python3.14 space
 
- -- Andreas Tille <tille at debian.org>  Mon, 18 May 2026 18:14:44 +0200
+ -- Andreas Tille <tille at debian.org>  Mon, 18 May 2026 19:04:28 +0200
 
 python-biom-format (2.1.17-1) unstable; urgency=medium
 


=====================================
debian/patches/numpy-2.4.patch
=====================================
@@ -2,6 +2,7 @@ Author: Andreas Tille <tille at debian.org>
 Last-Update: 2018-05-18
 Bug-Debian: https://bugs.debian.org/1131071
 Description: in1d was replaced by isin in numpy 2.4
+Forwarded: https://github.com/biocore/biom-format/issues/1003
 
 --- a/biom/table.py
 +++ b/biom/table.py


=====================================
debian/rules
=====================================
@@ -44,6 +44,8 @@ execute_after_dh_auto_install:
 	find $(PYBUILD_DESTDIR) -name .coverage -delete
 
 execute_after_dh_python3:
-	rm -rf debian/*/usr/lib/python3.14/dist-packages/biom_format-2.1.17.dist-info
-	rmdir debian/*/usr/lib/python3.14/dist-packages
-	rmdir debian/*/usr/lib/python3.14
+	if [ -d debian/python3-biom-format/usr/lib/python3.14 ] ; then \
+	    rm -rf debian/*/usr/lib/python3.14/dist-packages/biom_format-2.1.17.dist-info ; \
+	    rmdir debian/*/usr/lib/python3.14/dist-packages ; \
+	    rmdir debian/*/usr/lib/python3.14 ; \
+	fi



View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/0e432ab3228aaeb11681b9bf4e1e34d0c3a97395...91ec153aac610226cd1f00f6fda88bb9060d89a3

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/0e432ab3228aaeb11681b9bf4e1e34d0c3a97395...91ec153aac610226cd1f00f6fda88bb9060d89a3
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