[med-svn] [Git][med-team/kallisto][master] d/rules: Remove core dump from failed test to not make it into the resulting...

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / kallisto


Commits:
17ac8fdc by Andreas Tille at 2026-05-23T07:13:41+02:00
d/rules: Remove core dump from failed test to not make it into the resulting package.  The proper fix would certainly be to fix the test!)

- - - - -


2 changed files:

- debian/changelog
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -6,6 +6,8 @@ kallisto (0.51.1+dfsg-2) UNRELEASED; urgency=medium
 
   [ Andreas Tille ]
   * Update standards version to 4.7.4, no changes needed.
+  * d/rules: Remove core dump from failed test to not make it into the
+    resulting package.  The proper fix would certainly be to fix the test!)
 
  -- Andreas Tille <tille at debian.org>  Fri, 22 May 2026 22:24:48 +0200
 


=====================================
debian/rules
=====================================
@@ -23,3 +23,9 @@ override_dh_auto_test:
 	cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) XDG_CACHE_HOME=$(mktemp --directory) snakemake --cores 1 || true
 	rm -rf test/.snakemake test/bus_out test/quant_out/run_info.json test/transcripts.kidx.gz \
 	        test/quant_out test/transcripts.kidx
+	# FIXME:
+	# ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz
+	# ./func_tests/runtests.sh: line 12: 299146 Segmentation fault         (core dumped) ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz 2> /dev/null > /dev/null
+	#[Failed]
+	#    This might leave a core file which should at least be removed to not make it into the final package
+	find . -name 'core' -o -name 'core.[0-9]*' | xargs rm -f



View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/17ac8fdcb7745928bc7d3c174c358320725fa762

-- 
View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/17ac8fdcb7745928bc7d3c174c358320725fa762
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