[med-svn] [Git][med-team/ray][master] 6 commits: Standards-Version: 4.7.4 (routine-update)
Andreas Tille (@tille)
gitlab at salsa.debian.org
Sat Oct 17 14:44:39 BST 2026
Andreas Tille pushed to branch master at Debian Med / ray
Commits:
8621aea1 by Andreas Tille at 2026-10-17T12:53:32+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
77801158 by Andreas Tille at 2026-10-17T13:20:54+02:00
Changes made by cme
- - - - -
54a1662e by Andreas Tille at 2026-10-17T13:20:56+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
b6cc3540 by Andreas Tille at 2026-10-17T12:20:58+01:00
Reformat the Last-Update date as ISO YYYY-MM-DD.
Changes-By: lintian-brush
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/hardening.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/mips.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/2to3.patch]
See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html
- - - - -
4f8323d1 by Andreas Tille at 2026-10-17T12:21:00+01:00
Set upstream metadata fields: Archive, Bug-Database.
Changes-By: lintian-brush
- - - - -
90602421 by Andreas Tille at 2026-10-17T15:15:00+02:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/patches/2to3.patch
- debian/patches/hardening.patch
- debian/patches/mips.patch
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-ray (2.3.1-10) UNRELEASED; urgency=medium
+ray (2.3.1-10) unstable; urgency=medium
* d/rules: fix the FTBFS on architectures where the default MPI is
MPICH (armhf, i386). (Closes: #1150815)
@@ -12,8 +12,14 @@ ray (2.3.1-10) UNRELEASED; urgency=medium
longer contains the core symbols); a bare -lmpi fails there with
"undefined reference to ompi_mpi_byte".
* d/watch: version=5
-
- -- Andreas Tille <tille at debian.org> Sat, 17 Oct 2026 10:30:00 +0200
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Reformat the Last-Update date as ISO YYYY-MM-DD.
+ * Set upstream metadata fields: Archive, Bug-Database.
+
+ -- Andreas Tille <tille at debian.org> Sat, 17 Oct 2026 15:09:56 +0200
ray (2.3.1-9) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,25 +1,26 @@
Source: ray
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>,
- Andreas Tille <tille at debian.org>
+Uploaders:
+ Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>,
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- zlib1g-dev,
- libbz2-dev,
- mpi-default-dev,
- pkgconf,
-Standards-Version: 4.7.0
+Build-Depends:
+ debhelper-compat (= 14),
+ zlib1g-dev,
+ libbz2-dev,
+ mpi-default-dev,
+ pkgconf,
Vcs-Browser: https://salsa.debian.org/med-team/ray
Vcs-Git: https://salsa.debian.org/med-team/ray.git
Homepage: https://denovoassembler.sourceforge.net/
-Rules-Requires-Root: no
Package: ray
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- mpi-default-bin
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ mpi-default-bin,
Description: de novo genome assemblies of next-gen sequencing data
Ray is a parallel software that computes de novo genome assemblies with
next-generation sequencing data.
@@ -33,9 +34,10 @@ Description: de novo genome assemblies of next-gen sequencing data
Package: ray-doc
Architecture: all
-Section: doc
-Depends: ${misc:Depends}
Multi-Arch: foreign
+Section: doc
+Depends:
+ ${misc:Depends},
Description: documentation for ray parallel de novo genome assembler
Ray is a parallel software that computes de novo genome assemblies with
next-generation sequencing data.
@@ -46,9 +48,10 @@ Description: documentation for ray parallel de novo genome assembler
Package: ray-extra
Architecture: all
-Depends: ${misc:Depends},
- r-base-core,
- python3
+Depends:
+ ${misc:Depends},
+ r-base-core,
+ python3,
Description: Scripts and XSL sheets for post-processing for ray
Ray is a parallel software that computes de novo genome assemblies with
next-generation sequencing data.
=====================================
debian/patches/2to3.patch
=====================================
@@ -1,7 +1,7 @@
Description: Use 2to3 to port to Python3
Bug-Debian: https://bugs.debian.org/945704
Author: Andreas Tille <tille at debian.org>
-Last-Update: Mon, 02 Dec 2019 12:40:56 +0100
+Last-Update: 2019-12-02
--- a/scripts/NCBI-Taxonomy/Create-Taxon-Names.py
+++ b/scripts/NCBI-Taxonomy/Create-Taxon-Names.py
=====================================
debian/patches/hardening.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org
-Last-Update: Wed, 5 Feb 2014 11:17:00 -0100
+Last-Update: 2014-02-05
Description: Propagate hardening options
--- a/Makefile
=====================================
debian/patches/mips.patch
=====================================
@@ -1,5 +1,5 @@
Author: Aurelien Jarno <aurel32 at debian.org>
-Last-Update: Sun, 16 Feb 2014 16:48:47 +0100
+Last-Update: 2014-02-16
Bug-Debian: http://bugs.debian.org/739184
Description: Build also on mips, mipsel and s390x
I still do not understand why it builds fine on other architectures,
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Archive: SourceForge
+Bug-Database: http://sourceforge.net/mailarchive/forum.php?forum_name=denovoassembler-users
Reference:
- Author: Sébastien Boisvert and François Laviolette and Jacques Corbeil
Title: >
View it on GitLab: https://salsa.debian.org/med-team/ray/-/compare/4a0b3229a25e6edeb34387a66641476539ef7ec3...906024213ac56e5089f5e3c435d9a49534983096
--
View it on GitLab: https://salsa.debian.org/med-team/ray/-/compare/4a0b3229a25e6edeb34387a66641476539ef7ec3...906024213ac56e5089f5e3c435d9a49534983096
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