[med-svn] [Git][med-team/bali-phy][upstream] New upstream version 4.3+dfsg
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Oct 19 21:13:52 BST 2026
Andreas Tille pushed to branch upstream at Debian Med / bali-phy
Commits:
ced1dd56 by Andreas Tille at 2026-10-19T21:30:39+02:00
New upstream version 4.3+dfsg
- - - - -
3467 changed files:
- .github/workflows/build.yml
- + .github/workflows/documentation.yml
- .github/workflows/release.yml
- .gitignore
- + ARCHITECTURE.md
- NEWS.md
- README.md
- Singularity
- + TODO/AutoBench.md
- + TODO/CaseEvaluation.md
- + TODO/CategoryStateProperties.md
- + TODO/ComponentStateProperties.md
- + TODO/DependentEdgeFix.md
- + TODO/FunDeps.md
- + TODO/ImproveAnalysis.md
- + TODO/InitialStackLoopPlan.md
- + TODO/Interpreters.md
- + TODO/MachineImprovements.md
- + TODO/MarkovModulated.md
- + TODO/ModelLanguage.md
- + TODO/NativeVector.md
- + TODO/ReduceAllocation.md
- + TODO/SimpleLanguage.md
- + TODO/Stack.md
- + TODO/StrictArguments.md
- + TODO/TODO.md
- + TODO/TransformedProperties.txt
- + TODO/UpstreamPackages.md
- + TODO/UseHaskellTypes.md
- + TODO/WindowsTests.md
- + TODO/dNdSWorkflow.md
- + TODO/exe-tests.md
- + TODO/runST.md
- + benchmarks/coalescent-history.md
- + benchmarks/coalescent-runs.tsv
- + benchmarks/dirichlet-process-map/Model.hs
- + benchmarks/dirichlet-process-map/README.md
- + benchmarks/dirichlet-process-map/results.md
- + benchmarks/dirichlet-process-map/runs.tsv
- bindings/distributions/bernoulli.json → bindings/distributions/Bernoulli.json
- bindings/distributions/beta.json → bindings/distributions/Beta.json
- bindings/distributions/binomial.json → bindings/distributions/Binomial.json
- bindings/distributions/cauchy.json → bindings/distributions/Cauchy.json
- bindings/distributions/dirichlet.json → bindings/distributions/Dirichlet.json
- bindings/distributions/dirichlet_mixture.json → bindings/distributions/DirichletMixture.json
- + bindings/distributions/DirichletOn.json
- bindings/distributions/dirichlet_on_dirichlet.json → bindings/distributions/DirichletOnDirichlet.json
- + bindings/distributions/DirichletProcess.json
- + bindings/distributions/DirichletProcessMap.json
- + bindings/distributions/DirichletProcessMixture.json
- + bindings/distributions/DirichletProcessOn.json
- bindings/distributions/exponential.json → bindings/distributions/Exponential.json
- bindings/distributions/fixed_topology_tree.json → bindings/distributions/FixedTopologyTree.json
- bindings/distributions/gamma.json → bindings/distributions/Gamma.json
- bindings/distributions/geometric.json → bindings/distributions/Geometric.json
- bindings/distributions/iid.json → bindings/distributions/IID.json
- bindings/distributions/iidMap.json → bindings/distributions/IIDMap.json
- bindings/distributions/iid_on.json → bindings/distributions/IIDOn.json
- bindings/distributions/laplace.json → bindings/distributions/Laplace.json
- bindings/distributions/logCauchy.json → bindings/distributions/LogCauchy.json
- bindings/distributions/logGamma.json → bindings/distributions/LogGamma.json
- bindings/distributions/logLaplace.json → bindings/distributions/LogLaplace.json
- bindings/distributions/logNormal.json → bindings/distributions/LogNormal.json
- bindings/distributions/normal.json → bindings/distributions/Normal.json
- bindings/distributions/poisson.json → bindings/distributions/Poisson.json
- bindings/distributions/shifted_exponential.json → bindings/distributions/ShiftedExponential.json
- bindings/distributions/shifted_gamma.json → bindings/distributions/ShiftedGamma.json
- bindings/distributions/symmetric_dirichlet.json → bindings/distributions/SymmetricDirichlet.json
- bindings/distributions/symmetric_dirichlet_on.json → bindings/distributions/SymmetricDirichletOn.json
- bindings/distributions/uniform.json → bindings/distributions/Uniform.json
- bindings/distributions/uniform_int.json → bindings/distributions/UniformInt.json
- bindings/distributions/uniform_tree.json → bindings/distributions/UniformRootedTree.json
- bindings/distributions/uniform_rooted_tree.json → bindings/distributions/UniformTree.json
- bindings/distributions/yule.json → bindings/distributions/Yule.json
- + bindings/distributions/delta.json
- − bindings/distributions/dirichlet_on.json
- bindings/functions/aa.json → bindings/functions/AA.json
- bindings/functions/dna.json → bindings/functions/DNA.json
- bindings/functions/rna.json → bindings/functions/RNA.json
- bindings/functions/add.json → bindings/functions/_add.json
- + bindings/functions/_and.json
- bindings/functions/div.json → bindings/functions/_div.json
- + bindings/functions/_eq.json
- + bindings/functions/_ge.json
- + bindings/functions/_gt.json
- + bindings/functions/_le.json
- + bindings/functions/_lt.json
- + bindings/functions/_mixture2.json
- + bindings/functions/_mod.json
- bindings/functions/mul.json → bindings/functions/_mul.json
- + bindings/functions/_ne.json
- + bindings/functions/_or.json
- bindings/functions/sub.json → bindings/functions/_sub.json
- + bindings/functions/_weighted.json
- bindings/functions/cdf.json
- bindings/functions/codonsOf.json → bindings/functions/codons.json
- + bindings/functions/discreteFromMap.json
- bindings/functions/doubletsOf.json → bindings/functions/doublets.json
- bindings/functions/getNucleotides.json
- bindings/functions/identity.json
- bindings/functions/letter_pairs.json
- bindings/functions/letters.json
- + bindings/functions/mapFromList.json
- + bindings/functions/numberBranchCategories.json
- + bindings/functions/numberBranchHypotheses.json
- + bindings/functions/numberHypothesisBranchCategories.json
- bindings/functions/number_pairs.json
- bindings/functions/ordered_letter_pairs.json
- + bindings/functions/ordered_letters.json
- bindings/functions/pdf.json
- bindings/functions/pow.json
- bindings/functions/quantile.json
- + bindings/functions/selectBranchHypothesis.json
- + bindings/functions/setFromList.json
- + bindings/functions/sum.json
- bindings/functions/tripletsOf.json → bindings/functions/triplets.json
- bindings/models/Rates/free.json → bindings/models/ASRV/Free.json
- bindings/models/Rates/gamma.json → bindings/models/ASRV/Gamma.json
- + bindings/models/ASRV/Gamma_mean.json
- + bindings/models/ASRV/Gamma_median.json
- + bindings/models/ASRV/Gamma_quadrature.json
- bindings/models/Rates/log_normal.json → bindings/models/ASRV/LogNormal.json
- bindings/models/busted.json → bindings/models/BUSTED.json
- bindings/models/busted_s.json → bindings/models/BUSTED_S.json
- + bindings/models/BranchModel.json
- + bindings/models/BranchModel_test.json
- bindings/models/branch_site.json → bindings/models/BranchSite.json
- bindings/models/branch_site_mixture.json → bindings/models/BranchSiteMixture.json
- + bindings/models/C10.json
- + bindings/models/C10_fixed.json
- + bindings/models/C20.json
- + bindings/models/C20_fixed.json
- + bindings/models/C30.json
- + bindings/models/C30_fixed.json
- + bindings/models/C40.json
- + bindings/models/C40_fixed.json
- + bindings/models/C50.json
- + bindings/models/C50_fixed.json
- + bindings/models/C60.json
- + bindings/models/C60_fixed.json
- bindings/models/Covarion/gtr.json → bindings/models/Covarion/GTR.json
- bindings/models/Covarion/galtier01.json → bindings/models/Covarion/Galtier01.json
- bindings/models/Covarion/huelsenbeck02.json → bindings/models/Covarion/Huelsenbeck02.json
- bindings/models/Covarion/huelsenbeck02_two.json → bindings/models/Covarion/Huelsenbeck02Two.json
- bindings/models/Covarion/huelsenbeck02_test.json → bindings/models/Covarion/Huelsenbeck02_test.json
- bindings/models/Covarion/multi_freq.json → bindings/models/Covarion/MultiFreq.json
- bindings/models/Covarion/ts98.json → bindings/models/Covarion/TuffleySteel98.json
- bindings/models/Covarion/wang07.json → bindings/models/Covarion/Wang07.json
- bindings/models/equ.json → bindings/models/EQU.json
- bindings/models/empirical.json → bindings/models/Empirical.json
- bindings/models/f.json → bindings/models/F.json
- bindings/models/f1x4.json → bindings/models/F1x4.json
- bindings/models/f3x4.json → bindings/models/F3x4.json
- bindings/models/f61.json → bindings/models/F61.json
- bindings/models/f81.json → bindings/models/F81.json
- bindings/models/fe.json → bindings/models/FE.json
- bindings/models/fMutSel.json → bindings/models/FMutSel.json
- bindings/models/fMutSel0.json → bindings/models/FMutSel0.json
- bindings/models/Frequencies/uniform.json
- bindings/models/gtr.json → bindings/models/GTR.json
- bindings/models/gtr_sym.json → bindings/models/GTR_sym.json
- bindings/models/gy94.json → bindings/models/GY94.json
- bindings/models/gy94_ext.json → bindings/models/GY94_ext.json
- bindings/models/hky85.json → bindings/models/HKY85.json
- bindings/models/hky85_sym.json → bindings/models/HKY85_sym.json
- bindings/models/inv.json → bindings/models/Inv.json
- bindings/models/jc69.json → bindings/models/JC69.json
- bindings/models/jtt.json → bindings/models/JTT.json
- bindings/models/k80.json → bindings/models/K80.json
- bindings/models/lg08.json → bindings/models/LG.json
- + bindings/models/LG4M.json
- + bindings/models/LG4X.json
- bindings/models/lg08_freq.json → bindings/models/LG_freq.json
- bindings/models/rna_16a.json → bindings/models/M16A.json
- bindings/models/m1a.json → bindings/models/M1a.json
- bindings/models/m2a.json → bindings/models/M2a.json
- bindings/models/m2a_test.json → bindings/models/M2a_test.json
- bindings/models/m3.json → bindings/models/M3.json
- bindings/models/m3_test.json → bindings/models/M3_test.json
- bindings/models/m7.json → bindings/models/M7.json
- bindings/models/m8.json → bindings/models/M8.json
- bindings/models/m8a.json → bindings/models/M8a.json
- bindings/models/m8a_test.json → bindings/models/M8a_test.json
- bindings/models/mg94.json → bindings/models/MG94.json
- bindings/models/mg94k.json → bindings/models/MG94K.json
- bindings/models/mg94_ext.json → bindings/models/MG94_ext.json
- bindings/models/mnm.json → bindings/models/MNM.json
- bindings/models/markov_modulate_mixture.json → bindings/models/MarkovModulate.json
- bindings/models/multi_freq.json → bindings/models/MultiFreq.json
- bindings/models/multi_rs07.json → bindings/models/MultiRS07.json
- bindings/models/multi_rate.json → bindings/models/MultiRate.json
- bindings/models/mut_sel.json → bindings/models/MutSel.json
- bindings/models/mut_sel_aa.json → bindings/models/MutSelAA.json
- bindings/models/pam.json → bindings/models/PAM.json
- bindings/models/parameter_mixture.json → bindings/models/ParameterMixture.json
- bindings/models/rna_edit.json → bindings/models/RNAEdit.json
- bindings/models/rs05.json → bindings/models/RS05.json
- bindings/models/rs07.json → bindings/models/RS07.json
- bindings/models/rs07_relaxed_rates.json → bindings/models/RS07RelaxedRates.json
- bindings/models/relaxed_rs07.json → bindings/models/RelaxedRS07.json
- bindings/models/tn93.json → bindings/models/TN93.json
- bindings/models/tn93_sym.json → bindings/models/TN93_sym.json
- + bindings/models/UL2.json
- bindings/models/wag.json → bindings/models/WAG.json
- bindings/models/wag_freq.json → bindings/models/WAG_freq.json
- bindings/models/dNdS.json
- bindings/models/density.json
- bindings/models/get_q.json → bindings/models/getQ.json
- bindings/models/gwF.json
- bindings/models/mixture.json
- − bindings/models/multiMixtureModel.json
- bindings/models/nonEq.json
- + bindings/models/nonRev.json
- − bindings/models/nonrev.json
- bindings/models/x2.json
- bindings/models/x2_sym.json
- bindings/models/x2x2.json
- bindings/models/x3.json
- bindings/models/x3_sym.json
- bindings/models/x3x3.json
- doc/.gitignore
- + doc/BUILDING.md
- doc/Doxyfile
- doc/GNUmakefile
- doc/Instructions.tut.xml
- doc/Instructions3.tut.xml
- doc/Instructions6.tut.xml
- doc/Instructions7.tut.xml
- doc/README.itex.xml → doc/README.xml
- doc/Tutorial.tut.xml
- doc/Tutorial2.tut.xml
- doc/Tutorial3.tut.xml
- doc/Tutorial4.tut.xml
- doc/Tutorial5.tut.xml
- doc/Tutorial6.tut.xml
- − doc/add_screen.pl
- + doc/add_screen.py
- + doc/check-guide.cjs
- doc/developer/GNUmakefile
- doc/developer/architecture.dot
- doc/developer/binding.md
- doc/developer/building.md
- doc/developer/builtin.md
- + doc/developer/cpp.md
- doc/developer/distribution.md
- doc/developer/mcmc_move.md
- doc/docbook-html.xsl
- − doc/docbook-xhtml.xsl
- + doc/guide-toc.js
- + doc/guide.css
- doc/man/alignment-draw.md
- doc/man/bali-phy-pkg.md
- doc/man/bali-phy.md
- − doc/man/bp-analyze.md
- doc/man/bali-subsample.md → doc/man/bpy-subsample.md
- + doc/man/bpy-summarize.md
- + doc/man/character-properties.md
- doc/man/cut-range.md
- doc/man/joint-indels.md
- doc/man/statreport.md
- doc/man/summarize-ancestors.md
- + doc/mathjax-config.js
- doc/meson.build
- + doc/package.json
- + doc/render-math-svg.cjs
- + doc/requirements.txt
- + doc/setup-guide.py
- + doc/test-render-math-svg.cjs
- + doc/user-guide-A4.css
- + doc/user-guide.css
- + doc/user-guide.xsl
- examples/ferns/README.txt
- examples/ferns/config.txt
- examples/ferns/config2.txt
- − examples/lrRNA/keep.pl
- + external/immer/LICENSE
- external/immer/immer/algorithm.hpp
- external/immer/immer/array.hpp
- external/immer/immer/array_transient.hpp
- external/immer/immer/atom.hpp
- external/immer/immer/box.hpp
- external/immer/immer/config.hpp
- external/immer/immer/detail/arrays/no_capacity.hpp
- external/immer/immer/detail/arrays/node.hpp
- external/immer/immer/detail/arrays/with_capacity.hpp
- external/immer/immer/detail/hamts/bits.hpp
- external/immer/immer/detail/hamts/champ.hpp
- external/immer/immer/detail/hamts/champ_iterator.hpp
- external/immer/immer/detail/hamts/node.hpp
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- external/immer/immer/detail/rbts/node.hpp
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- external/immer/immer/detail/rbts/position.hpp
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- external/immer/immer/detail/rbts/rrbtree_iterator.hpp
- external/immer/immer/detail/util.hpp
- external/immer/immer/experimental/detail/dvektor_impl.hpp
- external/immer/immer/experimental/dvektor.hpp
- + external/immer/immer/extra/cereal/immer_array.hpp
- + external/immer/immer/extra/cereal/immer_box.hpp
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- + external/immer/immer/extra/persist/cereal/save.hpp
- + external/immer/immer/extra/persist/detail/alias.hpp
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- + external/immer/immer/extra/persist/detail/cereal/persistable.hpp
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- + external/immer/immer/extra/persist/detail/cereal/wrap.hpp
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- + external/immer/immer/extra/persist/detail/common/pool.hpp
- + external/immer/immer/extra/persist/detail/names.hpp
- + external/immer/immer/extra/persist/detail/node_ptr.hpp
- + external/immer/immer/extra/persist/detail/rbts/input.hpp
- + external/immer/immer/extra/persist/detail/rbts/output.hpp
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- external/immer/immer/flex_vector.hpp
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- external/immer/immer/heap/cpp_heap.hpp
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- external/immer/immer/heap/free_list_heap.hpp
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- haskell/Foreign/Pair.hs
- haskell/Foreign/String.hs
- haskell/Foreign/Vector.hs
- haskell/Forest.hs
- haskell/Graph.hs
- haskell/IModel.hs
- haskell/MCMC/Loggers.hs
- haskell/MCMC/Moves/Integer.hs
- haskell/MCMC/Moves/MH.hs
- haskell/MCMC/Moves/Real.hs
- haskell/MCMC/Moves/Tree.hs
- haskell/MCMC/Types.hs
- haskell/Markov.hs
- + haskell/Numeric/LinearAlgebra.hs
- + haskell/Numeric/LinearAlgebra/Data.hs
- haskell/Numeric/Log.hs
- − haskell/Numeric/LogDouble.hs
- + haskell/Numeric/Matrix.hs
- haskell/Numeric/Natural.hs
- haskell/Numeric/Prob.hs
- + haskell/Numeric/ProbDensity.hs
- + haskell/Numeric/Vector.hs
- + haskell/Options/Applicative.hs
- + haskell/Options/Applicative/Builder.hs
- + haskell/Options/Applicative/Builder/Internal.hs
- + haskell/Options/Applicative/Common.hs
- + haskell/Options/Applicative/Extra.hs
- + haskell/Options/Applicative/Help.hs
- + haskell/Options/Applicative/Internal.hs
- + haskell/Options/Applicative/Types.hs
- haskell/Parameters.hs
- haskell/Parse.hs
- haskell/PopGen.hs
- haskell/PopGen/Deploid.hs
- haskell/Prelude.hs
- haskell/Probability/Dist.hs
- haskell/Probability/Distribution/Bernoulli.hs
- haskell/Probability/Distribution/Beta.hs
- haskell/Probability/Distribution/Binomial.hs
- haskell/Probability/Distribution/Categorical.hs
- haskell/Probability/Distribution/Cauchy.hs
- haskell/Probability/Distribution/Changepoints.hs
- haskell/Probability/Distribution/Dirichlet.hs
- haskell/Probability/Distribution/DirichletProcess.hs
- + haskell/Probability/Distribution/DirichletProcess/PolyaUrn.hs
- + haskell/Probability/Distribution/DirichletProcess/Stick.hs
- haskell/Probability/Distribution/Discrete.hs
- haskell/Probability/Distribution/Gamma.hs
- haskell/Probability/Distribution/Geometric.hs
- haskell/Probability/Distribution/Independent.hs
- haskell/Probability/Distribution/Laplace.hs
- haskell/Probability/Distribution/List.hs
- haskell/Probability/Distribution/Mixture.hs
- haskell/Probability/Distribution/Multinomial.hs
- haskell/Probability/Distribution/NegativeBinomial.hs
- haskell/Probability/Distribution/Normal.hs
- haskell/Probability/Distribution/PairwiseAlignment.hs
- haskell/Probability/Distribution/PhyloAlignment.hs
- haskell/Probability/Distribution/PhyloCTMC/FixedA.hs
- + haskell/Probability/Distribution/PhyloCTMC/FixedA/Properties.hs
- + haskell/Probability/Distribution/PhyloCTMC/FixedA/Reversible.hs
- + haskell/Probability/Distribution/PhyloCTMC/FixedA/Sample.hs
- + haskell/Probability/Distribution/PhyloCTMC/FixedA/Variable.hs
- haskell/Probability/Distribution/PhyloCTMC/PhyloCTMC.hs
- haskell/Probability/Distribution/PhyloCTMC/Properties.hs
- haskell/Probability/Distribution/PhyloCTMC/VariableA.hs
- + haskell/Probability/Distribution/PhyloCTMC/VariableA/Properties.hs
- + haskell/Probability/Distribution/PhyloCTMC/VariableA/Reversible.hs
- + haskell/Probability/Distribution/PhyloCTMC/VariableA/Sample.hs
- haskell/Probability/Distribution/Poisson.hs
- haskell/Probability/Distribution/RecDist.hs
- haskell/Probability/Distribution/Shifted.hs
- haskell/Probability/Distribution/Transform.hs
- haskell/Probability/Distribution/Tree/BirthDeath.hs
- haskell/Probability/Distribution/Tree/Coalescent.hs
- haskell/Probability/Distribution/Tree/Modifiable.hs
- haskell/Probability/Distribution/Tree/UniformTimeTree.hs
- haskell/Probability/Distribution/Tree/UniformTopology.hs
- haskell/Probability/Distribution/Tree/Yule.hs
- haskell/Probability/Distribution/Tuple.hs
- haskell/Probability/Distribution/Uniform.hs
- haskell/Probability/Distribution/UniqueDist.hs
- haskell/Probability/Logger.hs
- haskell/Probability/Random.hs
- + haskell/Reversible.hs
- haskell/SMC.hs
- haskell/SModel.hs
- haskell/SModel/ASRV.hs
- haskell/SModel/BranchModel.hs
- + haskell/SModel/BranchSite.hs
- haskell/SModel/BranchSiteMixture.hs
- + haskell/SModel/CXX.hs
- + haskell/SModel/CXX/C10.hs
- + haskell/SModel/CXX/C20.hs
- + haskell/SModel/CXX/C30.hs
- + haskell/SModel/CXX/C40.hs
- + haskell/SModel/CXX/C50.hs
- + haskell/SModel/CXX/C60.hs
- haskell/SModel/Codons.hs
- haskell/SModel/Doublets.hs
- haskell/SModel/Empirical.hs
- haskell/SModel/Frequency.hs
- + haskell/SModel/LG4M.hs
- + haskell/SModel/LG4X.hs
- haskell/SModel/Likelihood/CLV.hs
- haskell/SModel/Likelihood/FixedA.hs
- haskell/SModel/Likelihood/VariableA.hs
- haskell/SModel/Markov.hs
- haskell/SModel/MarkovModulated.hs
- haskell/SModel/MixtureModel.hs
- − haskell/SModel/MixtureModels.hs
- haskell/SModel/MultiFrequency.hs
- haskell/SModel/MutSel.hs
- haskell/SModel/NonReversibleMarkov.hs
- haskell/SModel/Parsimony.hs
- haskell/SModel/PosSelection.hs
- + haskell/SModel/Property.hs
- haskell/SModel/RNAEdit.hs
- haskell/SModel/ReversibleMarkov.hs
- haskell/SModel/Simple.hs
- + haskell/SModel/UL2.hs
- + haskell/SModel/UL3.hs
- haskell/System/Directory.hs
- haskell/System/Environment.hs
- + haskell/System/Exit.hs
- haskell/System/FilePath.hs
- haskell/System/IO.hs
- haskell/Text/Read.hs
- haskell/Text/Show.hs
- haskell/Tree.hs
- haskell/Tree/Newick.hs
- − help/commands/Rao-Blackwellize.txt
- help/commands/config.txt
- − help/commands/disable.txt
- − help/commands/enable.txt
- help/commands/fix.txt
- help/commands/imodel.txt
- help/commands/iterations.txt
- help/commands/link.txt
- − help/commands/model.txt
- help/commands/package-path.txt
- help/commands/print.txt
- + help/commands/run.txt
- help/commands/scale.txt
- help/commands/seed.txt
- help/commands/set.txt
- help/commands/smodel.txt
- help/commands/test.txt
- help/commands/tree.txt
- help/parameters.txt
- help/parameters/priors.txt
- meson.build
- meson.options
- python/baliphy/printers.py
- scripts/Simulate.hs
- scripts/SimulateFixed.hs
- − scripts/bali-phy-pkg
- + scripts/bali-phy-pkg.cmd
- + scripts/bali-phy-pkg.py
- − scripts/bali_phy_xsede.xml
- scripts/benchmark.py
- scripts/bp-analyze → scripts/bpy-summarize
- + scripts/bpy-summarize-assets/LICENSE
- + scripts/bpy-summarize-assets/atom-one-light.min.css
- + scripts/bpy-summarize-assets/haskell.min.js
- + scripts/bpy-summarize-assets/highlight.min.js
- + scripts/bpy-summarize-assets/positive-selection.js
- + scripts/bpy-summarize-assets/table-sort.js
- + scripts/bpy-summarize-assets/x3dom-1.8.3/LICENSE.md
- + scripts/bpy-summarize-assets/x3dom-1.8.3/README.md
- + scripts/bpy-summarize-assets/x3dom-1.8.3/x3dom.css
- + scripts/bpy-summarize-assets/x3dom-1.8.3/x3dom.js
- + scripts/bpy-summarize.cmd
- + scripts/embed-text.py
- + scripts/fasta-flip
- − scripts/fasta-flip.pl
- + scripts/install-windows-runtime-dlls.py
- scripts/make_winroot.sh
- − scripts/pickout.pl
- + scripts/plot-SRQ.R
- + scripts/plot-support-levels.R
- − scripts/stats-time.pl
- src/alignment/alignment-constraint.cc
- src/alignment/alignment-constraint.H → src/alignment/alignment-constraint.hh
- src/alignment/alignment-random.cc
- src/alignment/alignment-util.cc
- src/alignment/alignment-util.H → src/alignment/alignment-util.hh
- src/alignment/alignment-util2.cc
- src/alignment/alignment-util2.H → src/alignment/alignment-util2.hh
- src/alignment/alignment.cc
- src/alignment/alignment.H → src/alignment/alignment.hh
- + src/alignment/character-properties.cc
- + src/alignment/character-properties.hh
- + src/alignment/character-property-alignment.cc
- + src/alignment/character-property-alignment.hh
- + src/alignment/character-property-report.cc
- + src/alignment/character-property-report.hh
- + src/alignment/character-property-sample-file.cc
- + src/alignment/character-property-sample-file.hh
- + src/alignment/character-property-summary.cc
- + src/alignment/character-property-summary.hh
- src/alignment/index-matrix.cc
- src/alignment/index-matrix.H → src/alignment/index-matrix.hh
- src/alignment/load.cc
- src/alignment/load.H → src/alignment/load.hh
- − src/bali-phy/A-T-model.H
- src/bali-phy/A-T-model.cc
- + src/bali-phy/A-T-model.hh
- src/bali-phy/bali-phy.cc
- − src/bali-phy/cmd_line.H
- src/bali-phy/cmd_line.cc
- + src/bali-phy/cmd_line.hh
- + src/bali-phy/cmd_line_cli11.cc
- + src/bali-phy/command_config.cc
- + src/bali-phy/command_config.hh
- + src/bali-phy/command_line_help.cc
- + src/bali-phy/command_line_help.hh
- src/bali-phy/files.cc
- src/bali-phy/files.H → src/bali-phy/files.hh
- src/bali-phy/help.cc
- src/bali-phy/io.H → src/bali-phy/io.hh
- src/bali-phy/link-partitions.cc
- src/bali-phy/link-partitions.H → src/bali-phy/link-partitions.hh
- src/bali-phy/meson.build
- src/bali-phy/paths.cc
- src/bali-phy/paths.H → src/bali-phy/paths.hh
- src/bali-phy/system.cc
- src/bali-phy/system.H → src/bali-phy/system.hh
- src/builtins/Alignment.cc
- src/builtins/Alphabet.cc
- − src/builtins/Array.cc
- src/builtins/Bits.cc
- + src/builtins/ByteString.cc
- src/builtins/Char.cc
- src/builtins/Data.cc
- src/builtins/Distribution.cc
- src/builtins/Environment.cc
- src/builtins/File.cc
- src/builtins/Foreign.cc
- src/builtins/IntMap.cc
- src/builtins/IntSet.cc
- src/builtins/Likelihood.cc
- src/builtins/LikelihoodSEV.cc
- src/builtins/MCMC.cc
- src/builtins/Matrix.cc
- src/builtins/Modifiables.cc
- + src/builtins/NativeVector.cc
- src/builtins/Num.cc
- src/builtins/Pair.cc
- src/builtins/Parsimony.cc
- src/builtins/PopGen.cc
- src/builtins/Prelude.cc
- src/builtins/Range.cc
- src/builtins/Real.cc
- src/builtins/SMC.cc
- src/builtins/SModel.cc
- src/builtins/Text.cc
- src/builtins/TreeDist.cc
- src/builtins/Vector.cc
- + src/builtins/Vector.hh
- + src/builtins/Word.cc
- + src/builtins/haskell-list-input.hh
- src/builtins/iota.H → src/builtins/iota.hh
- src/builtins/meson.build
- + src/builtins/native-vector-input.hh
- + src/builtins/native-vector-view.hh
- + src/computation/byte-string.cc
- + src/computation/byte-string.hh
- − src/computation/closure.H
- src/computation/closure.cc
- + src/computation/closure.hh
- src/computation/context.cc
- src/computation/context.H → src/computation/context.hh
- src/computation/core/ast.H → src/computation/core/ast.hh
- + src/computation/core/convert.cc
- + src/computation/core/convert.hh
- − src/computation/core/func.H
- src/computation/core/func.cc
- + src/computation/core/func.hh
- + src/computation/core/id_info.hh
- + src/computation/core/subst.hh
- src/computation/haskell/coretype.cc → src/computation/core/type.cc
- src/computation/haskell/coretype.H → src/computation/core/type.hh
- src/computation/core/wrap.cc
- src/computation/core/wrap.H → src/computation/core/wrap.hh
- src/computation/data_con_info.cc
- src/computation/data_con_info.H → src/computation/data_con_info.hh
- src/computation/desugar/desugar-case.cc
- src/computation/desugar/desugar.cc
- src/computation/desugar/desugar.H → src/computation/desugar/desugar.hh
- − src/computation/expression/apply.H
- − src/computation/expression/apply.cc
- − src/computation/expression/bool.H
- − src/computation/expression/bool.cc
- − src/computation/expression/case.H
- − src/computation/expression/case.cc
- − src/computation/expression/constructor.H
- − src/computation/expression/constructor.cc
- − src/computation/expression/convert.H
- − src/computation/expression/convert.cc
- − src/computation/expression/core.H
- − src/computation/expression/core.cc
- − src/computation/expression/do_block.H
- − src/computation/expression/do_block.cc
- − src/computation/expression/expression.H
- − src/computation/expression/expression.cc
- − src/computation/expression/expression_ref.H
- − src/computation/expression/expression_ref.cc
- − src/computation/expression/index_var.H
- − src/computation/expression/indexify.H
- − src/computation/expression/indexify.cc
- − src/computation/expression/lambda.H
- − src/computation/expression/lambda.cc
- − src/computation/expression/let.H
- − src/computation/expression/let.cc
- − src/computation/expression/list.H
- − src/computation/expression/list.cc
- − src/computation/expression/maybe.H
- − src/computation/expression/maybe.cc
- − src/computation/expression/reg_var.H
- − src/computation/expression/reg_var.cc
- − src/computation/expression/substitute.H
- − src/computation/expression/substitute.cc
- − src/computation/expression/trim.H
- − src/computation/expression/trim.cc
- − src/computation/expression/tuple.H
- − src/computation/expression/tuple.cc
- − src/computation/expression/var.H
- − src/computation/expression/var.cc
- + src/computation/fixity.hh
- src/computation/fresh_vars.cc
- src/computation/fresh_vars.H → src/computation/fresh_vars.hh
- src/computation/haskell/Integer.H → src/computation/haskell/Integer.hh
- − src/computation/haskell/core.H
- − src/computation/haskell/core.cc
- + src/computation/haskell/cpp.cc
- + src/computation/haskell/cpp.hh
- src/computation/haskell/extensions.cc
- src/computation/haskell/extensions.H → src/computation/haskell/extensions.hh
- + src/computation/haskell/generated.cc
- + src/computation/haskell/generated.hh
- src/computation/haskell/haskell.cc
- src/computation/haskell/haskell.H → src/computation/haskell/haskell.hh
- src/computation/haskell/ids.cc
- src/computation/haskell/ids.H → src/computation/haskell/ids.hh
- src/computation/haskell/integer_container.H → src/computation/haskell/integer_container.hh
- src/computation/haskell/literal.cc
- src/computation/haskell/literal.H → src/computation/haskell/literal.hh
- src/computation/haskell/pattern.cc
- src/computation/haskell/pattern.H → src/computation/haskell/pattern.hh
- src/computation/haskell/type.cc
- src/computation/haskell/type.H → src/computation/haskell/type.hh
- src/computation/haskell/var.cc
- src/computation/haskell/var.H → src/computation/haskell/var.hh
- + src/computation/haskell/variant_node.hh
- src/computation/instance_info.cc
- src/computation/instance_info.H → src/computation/instance_info.hh
- src/computation/loader.cc
- src/computation/loader.H → src/computation/loader.hh
- src/computation/machine/args.cc
- src/computation/machine/args.H → src/computation/machine/args.hh
- src/computation/machine/effect.H → src/computation/machine/effect.hh
- src/computation/machine/effects.cc
- src/computation/machine/effects.H → src/computation/machine/effects.hh
- src/computation/machine/error_exception.H → src/computation/machine/error_exception.hh
- + src/computation/machine/eval_result.hh
- src/computation/machine/evaluate.cc
- src/computation/machine/gc.cc
- src/computation/machine/gcobject.cc
- src/computation/machine/gcobject.H → src/computation/machine/gcobject.hh
- src/computation/machine/graph_register.cc
- src/computation/machine/graph_register.H → src/computation/machine/graph_register.hh
- − src/computation/machine/kahan.H
- src/computation/machine/mapping.cc
- src/computation/machine/mapping.H → src/computation/machine/mapping.hh
- src/computation/machine/pool.H → src/computation/machine/pool.hh
- + src/computation/machine/requested_exit.hh
- src/computation/machine/reroot.cc
- src/computation/machine/show_graph.cc
- src/computation/machine/sums.cc
- src/computation/machine/tokens.cc
- + src/computation/machine/translate.cc
- src/computation/meson.build
- src/computation/message.cc
- src/computation/message.H → src/computation/message.hh
- src/computation/module.cc
- src/computation/module.H → src/computation/module.hh
- src/computation/object.cc
- src/computation/object.H → src/computation/object.hh
- src/computation/operation.H → src/computation/operation.hh
- − src/computation/operations.H
- src/computation/operations.cc
- + src/computation/operations.hh
- + src/computation/optimization/arity.cc
- + src/computation/optimization/arity.hh
- + src/computation/optimization/call-arity.cc
- + src/computation/optimization/call-arity.hh
- − src/computation/optimization/float-out.H
- src/computation/optimization/float-out.cc
- + src/computation/optimization/float-out.hh
- − src/computation/optimization/free-vars.H
- src/computation/optimization/free-vars.cc
- + src/computation/optimization/free-vars.hh
- src/computation/optimization/inliner.cc
- src/computation/optimization/inliner.H → src/computation/optimization/inliner.hh
- − src/computation/optimization/occurrence.H
- src/computation/optimization/occurrence.cc
- + src/computation/optimization/occurrence.hh
- − src/computation/optimization/occurrence_info.cc
- src/computation/optimization/occurrence_info.H → src/computation/optimization/occurrence_info.hh
- − src/computation/optimization/set-levels.H
- src/computation/optimization/set-levels.cc
- + src/computation/optimization/set-levels.hh
- − src/computation/optimization/simplifier.H
- src/computation/optimization/simplifier.cc
- + src/computation/optimization/simplifier.hh
- + src/computation/optimization/simplifier_env.hh
- src/computation/optimization/simplifier_options.H → src/computation/optimization/simplifier_options.hh
- src/computation/optimization/substitution.H → src/computation/optimization/substitution.hh
- src/computation/param.cc
- src/computation/param.H → src/computation/param.hh
- src/computation/parser/driver.cc
- src/computation/parser/driver.hh
- src/computation/parser/gen_parser.sh
- src/computation/parser/lexer.cc
- src/computation/parser/lexer.l
- src/computation/parser/located.H → src/computation/parser/located.hh
- src/computation/parser/parser.cc
- src/computation/parser/parser.hh
- src/computation/parser/parser.y
- src/computation/preprocess.cc
- + src/computation/preprocess.hh
- src/computation/program.cc
- src/computation/program.H → src/computation/program.hh
- + src/computation/record_field_info.hh
- + src/computation/record_utils.cc
- + src/computation/record_utils.hh
- src/computation/rename/decls.cc
- + src/computation/rename/disambiguate.cc
- src/computation/rename/expression.cc
- src/computation/rename/infix.cc
- src/computation/rename/match.cc
- src/computation/rename/pattern.cc
- + src/computation/rename/records.cc
- + src/computation/rename/records.hh
- src/computation/rename/rename.cc
- src/computation/rename/rename.H → src/computation/rename/rename.hh
- src/computation/rename/stmt.cc
- src/computation/rename/types.cc
- + src/computation/runtime/ast.cc
- + src/computation/runtime/ast.hh
- + src/computation/runtime/indexify.cc
- + src/computation/runtime/indexify.hh
- src/computation/expression/interchangeable.cc → src/computation/runtime/interchangeable.cc
- src/computation/expression/interchangeable.H → src/computation/runtime/interchangeable.hh
- src/computation/expression/modifiable.cc → src/computation/runtime/modifiable.cc
- src/computation/expression/modifiable.H → src/computation/runtime/modifiable.hh
- + src/computation/runtime/trim.cc
- + src/computation/runtime/trim.hh
- src/computation/symbols.cc
- src/computation/symbols.H → src/computation/symbols.hh
- − src/computation/type_constant.H
- + src/computation/type_constant.hh
- src/computation/typecheck/alphabetize.cc
- src/computation/typecheck/alphabetize.H → src/computation/typecheck/alphabetize.hh
- src/computation/typecheck/binds.cc
- src/computation/typecheck/class.cc
- src/computation/typecheck/constraints.cc
- src/computation/typecheck/constraints.H → src/computation/typecheck/constraints.hh
- src/computation/typecheck/context.cc
- src/computation/typecheck/context.H → src/computation/typecheck/context.hh
- src/computation/typecheck/data.cc
- src/computation/typecheck/default.cc
- + src/computation/typecheck/derived.cc
- src/computation/typecheck/env.cc
- src/computation/typecheck/env.H → src/computation/typecheck/env.hh
- src/computation/typecheck/errors.cc
- src/computation/typecheck/expected.cc
- src/computation/typecheck/expected.H → src/computation/typecheck/expected.hh
- src/computation/typecheck/expression.cc
- + src/computation/typecheck/fundeps.cc
- + src/computation/typecheck/fundeps.hh
- src/computation/typecheck/instance.cc
- src/computation/typecheck/kind.cc
- src/computation/typecheck/kind.H → src/computation/typecheck/kind.hh
- src/computation/typecheck/kindcheck.cc
- src/computation/typecheck/kindcheck.H → src/computation/typecheck/kindcheck.hh
- src/computation/typecheck/match.cc
- src/computation/typecheck/match.H → src/computation/typecheck/match.hh
- src/computation/typecheck/pattern.cc
- src/computation/typecheck/quals.cc
- src/computation/typecheck/solver.cc
- src/computation/typecheck/solver.H → src/computation/typecheck/solver.hh
- src/computation/typecheck/solver/canonicalize.cc
- src/computation/typecheck/solver/rewrite.cc
- src/computation/typecheck/substitution.cc
- src/computation/typecheck/substitution.H → src/computation/typecheck/substitution.hh
- src/computation/typecheck/tidy.cc
- src/computation/typecheck/tidy.H → src/computation/typecheck/tidy.hh
- src/computation/typecheck/type_groups.cc
- src/computation/typecheck/typecheck.cc
- src/computation/typecheck/typecheck.H → src/computation/typecheck/typecheck.hh
- src/computation/typecheck/types.cc
- src/computation/typecheck/types.H → src/computation/typecheck/types.hh
- src/computation/typecheck/unify.cc
- + src/computation/unfolding.hh
- − src/computation/varinfo.H
- src/dp/2way.cc
- src/dp/2way.H → src/dp/2way.hh
- src/dp/3way.cc
- src/dp/3way.H → src/dp/3way.hh
- src/dp/4way.cc
- src/dp/4way.H → src/dp/4way.hh
- src/dp/5way.cc
- src/dp/5way.H → src/dp/5way.hh
- src/dp/A2_states.H → src/dp/A2_states.hh
- src/dp/alignment-sums.cc
- src/dp/alignment-sums.H → src/dp/alignment-sums.hh
- src/dp/bits.H → src/dp/bits.hh
- src/dp/dp-array.cc
- src/dp/dp-array.H → src/dp/dp-array.hh
- src/dp/dp-cube.cc
- src/dp/dp-cube.H → src/dp/dp-cube.hh
- src/dp/dp-engine.cc
- src/dp/dp-engine.H → src/dp/dp-engine.hh
- src/dp/dp-matrix.cc
- src/dp/dp-matrix.H → src/dp/dp-matrix.hh
- src/dp/dp_hmm.cc
- src/dp/dp_hmm.H → src/dp/dp_hmm.hh
- src/dp/hmm.cc
- src/dp/hmm.H → src/dp/hmm.hh
- src/imodel/imodel.cc
- src/imodel/imodel.H → src/imodel/imodel.hh
- src/math/exponential.cc
- src/math/exponential.H → src/math/exponential.hh
- src/math/logprod.H → src/math/logprod.hh
- src/math/pow2.cc
- src/math/pow2.H → src/math/pow2.hh
- src/mcmc/moves.cc
- src/mcmc/prob_ratios.H → src/mcmc/prob_ratios.hh
- src/mcmc/result.cc
- src/mcmc/result.H → src/mcmc/result.hh
- src/mcmc/sample-A4.cc
- src/mcmc/sample-A5-2D.cc
- src/mcmc/sample-A5.cc
- − src/mcmc/sample-alignment.H
- src/mcmc/sample-alignment.cc
- + src/mcmc/sample-alignment.hh
- src/mcmc/sample-branch-lengths.cc
- src/mcmc/sample-cube.cc
- src/mcmc/sample-node.cc
- src/mcmc/sample-topology-NNI.cc
- src/mcmc/sample-topology-SPR.cc
- src/mcmc/sample-tri.cc
- src/mcmc/sample.H → src/mcmc/sample.hh
- src/mcmc/slice-sampling.cc
- src/mcmc/slice-sampling.H → src/mcmc/slice-sampling.hh
- src/mcon/include/mcon/mcon.H → src/mcon/include/mcon/mcon.hh
- src/mcon/mcon.cc
- src/meson.build
- src/models/A-T-prog.cc
- src/models/A-T-prog.H → src/models/A-T-prog.hh
- src/models/TreeInterface.cc
- src/models/TreeInterface.H → src/models/TreeInterface.hh
- src/models/code-generation.cc
- src/models/code-generation.H → src/models/code-generation.hh
- src/models/compile.cc
- src/models/compile.H → src/models/compile.hh
- src/models/driver.cc
- src/models/driver.hh
- src/models/lexer.cc
- src/models/lexer.l
- src/models/logger.cc
- src/models/logger.H → src/models/logger.hh
- + src/models/model-box.hh
- + src/models/model-expr.cc
- + src/models/model-expr.hh
- + src/models/model-type.cc
- + src/models/model-type.hh
- src/models/parameters.cc
- src/models/parameters.H → src/models/parameters.hh
- − src/models/parse.H
- src/models/parse.cc
- + src/models/parse.hh
- src/models/parser.cc
- src/models/parser.hh
- src/models/parser.y
- src/models/path.cc
- src/models/path.H → src/models/path.hh
- − src/models/rules.H
- src/models/rules.cc
- + src/models/rules.hh
- − src/models/typecheck.H
- src/models/typecheck.cc
- + src/models/typecheck.hh
- src/models/unification.cc
- src/models/unification.H → src/models/unification.hh
- + src/probability/availability.hh
- + src/probability/choice-weight.hh
- src/probability/choose.cc
- src/probability/choose.H → src/probability/choose.hh
- src/probability/probability.cc
- src/probability/probability.H → src/probability/probability.hh
- src/sequence/RNAEdits.cc
- src/sequence/RNAEdits.H → src/sequence/RNAEdits.hh
- src/sequence/alphabet.cc
- src/sequence/alphabet.H → src/sequence/alphabet.hh
- + src/sequence/ambiguity.cc
- + src/sequence/ambiguity.hh
- src/sequence/codons.cc
- src/sequence/codons.H → src/sequence/codons.hh
- src/sequence/doublets.cc
- src/sequence/doublets.H → src/sequence/doublets.hh
- src/sequence/genetic_code.cc
- src/sequence/genetic_code.H → src/sequence/genetic_code.hh
- src/sequence/sequence-format.cc
- src/sequence/sequence-format.H → src/sequence/sequence-format.hh
- src/sequence/sequence.cc
- src/sequence/sequence.H → src/sequence/sequence.hh
- src/sequence/triplets.cc
- src/sequence/triplets.H → src/sequence/triplets.hh
- src/substitution/cache.cc
- src/substitution/cache.H → src/substitution/cache.hh
- + src/substitution/component-state.hh
- src/substitution/likelihood.cc
- src/substitution/likelihood.H → src/substitution/likelihood.hh
- − src/substitution/likelihoodSEV.H
- src/substitution/likelihoodSEV.cc
- + src/substitution/likelihoodSEV.hh
- src/substitution/ops.cc
- src/substitution/ops.H → src/substitution/ops.hh
- src/substitution/parsimony.cc
- src/substitution/parsimony.H → src/substitution/parsimony.hh
- src/tools/alignment-cat.cc
- src/tools/alignment-chop-internal.cc
- src/tools/alignment-compare.cc
- src/tools/alignment-consensus.cc
- src/tools/alignment-convert.cc
- src/tools/alignment-distances.cc
- + src/tools/alignment-draw-letters.js
- + src/tools/alignment-draw-properties.js
- + src/tools/alignment-draw-scales.js
- + src/tools/alignment-draw-viewer.js
- src/tools/alignment-draw.cc
- + src/tools/alignment-draw.css
- src/tools/alignment-find-conserved.cc
- src/tools/alignment-find.cc
- src/tools/alignment-gild.cc
- src/tools/alignment-identity.cc
- src/tools/alignment-indices.cc
- src/tools/alignment-info.cc
- src/tools/alignment-max.cc
- src/tools/alignment-smc.cc
- src/tools/alignment-thin.cc
- src/tools/alignment-translate.cc
- src/tools/alignments-diff.cc
- src/tools/analyze-rates.cc
- src/tools/bootstrap.cc
- src/tools/bootstrap.H → src/tools/bootstrap.hh
- + src/tools/character-properties.cc
- src/tools/colors.cc
- src/tools/colors.H → src/tools/colors.hh
- src/tools/consensus-tree.cc
- src/tools/consensus-tree.H → src/tools/consensus-tree.hh
- src/tools/cut-range.cc
- src/tools/distance-methods.cc
- src/tools/distance-methods.H → src/tools/distance-methods.hh
- src/tools/distance-report.cc
- src/tools/distance-report.H → src/tools/distance-report.hh
- src/tools/draw-graph.cc
- src/tools/draw-tree.cc
- src/tools/extract-ancestors.cc
- src/tools/findroot.cc
- src/tools/findroot.H → src/tools/findroot.hh
- src/tools/inverse.cc
- src/tools/inverse.H → src/tools/inverse.hh
- src/tools/joint-A-T.cc
- src/tools/joint-A-T.H → src/tools/joint-A-T.hh
- src/tools/joint-indels.cc
- src/tools/joint-parsimony.cc
- src/tools/make_gaps.cc
- src/tools/mcon-tool.cc
- src/tools/mctree-mean-lengths.cc
- src/tools/mctree.cc
- src/tools/mctree.H → src/tools/mctree.hh
- src/tools/model_P.cc
- src/tools/optimize.cc
- src/tools/optimize.H → src/tools/optimize.hh
- src/tools/parsimony.cc
- src/tools/parsimony.H → src/tools/parsimony.hh
- src/tools/parsimony2.cc
- src/tools/parsimony2.H → src/tools/parsimony2.hh
- src/tools/partition.cc
- src/tools/partition.H → src/tools/partition.hh
- src/tools/partitions-supported.cc
- src/tools/path-graph.cc
- src/tools/pickout.cc
- src/tools/read-trees.cc
- src/tools/read-trees.H → src/tools/read-trees.hh
- src/tools/srqinvert.cc
- src/tools/statistics.cc
- src/tools/statistics.H → src/tools/statistics.hh
- src/tools/statreport.cc
- src/tools/stats-cat.cc
- src/tools/stats-merge.cc
- src/tools/stats-select.cc
- src/tools/stats-table.cc
- src/tools/stats-table.H → src/tools/stats-table.hh
- src/tools/subsample.cc
- src/tools/summarize-ancestors.cc
- − src/tools/test.cc
- src/tools/tree-dist.cc
- src/tools/tree-dist.H → src/tools/tree-dist.hh
- src/tools/tree-mean-lengths.cc
- src/tools/tree-partitions.cc
- src/tools/tree-reroot.cc
- src/tools/tree-tool.cc
- src/tools/trees-bootstrap.cc
- src/tools/trees-consensus.cc
- src/tools/trees-distances.cc
- src/tools/trees-pair-distances.cc
- src/tools/trees-to-SRQ.cc
- src/tools/truckgraph3d.cc
- src/tree-align/link.cc
- src/tree-align/link.H → src/tree-align/link.hh
- src/tree-align/link2.cc
- src/tree-align/link2.H → src/tree-align/link2.hh
- src/tree-align/n_indels.cc
- src/tree-align/n_indels.H → src/tree-align/n_indels.hh
- src/tree-align/n_indels2.cc
- src/tree-align/n_indels2.H → src/tree-align/n_indels2.hh
- src/tree/newick-tokenizer.cc
- src/tree/newick-tokenizer.H → src/tree/newick-tokenizer.hh
- src/tree/randomtree.cc
- src/tree/sequencetree.cc
- src/tree/sequencetree.H → src/tree/sequencetree.hh
- src/tree/tree-branchnode.H → src/tree/tree-branchnode.hh
- src/tree/tree-util.cc
- src/tree/tree-util.H → src/tree/tree-util.hh
- src/tree/tree.cc
- src/tree/tree.H → src/tree/tree.hh
- src/util/assert.cc
- src/util/cmdline.cc
- src/util/demangle.cc
- src/util/file-paths.cc
- src/util/file-readers.cc
- src/util/graph.cc
- + src/util/include/util/OrderedDouble.hh
- src/util/include/util/bitmask.H → src/util/include/util/bitmask.hh
- src/util/include/util/bounds.H → src/util/include/util/bounds.hh
- + src/util/include/util/cereal/intrusive_ptr.hh
- src/util/include/util/cmdline.H → src/util/include/util/cmdline.hh
- src/util/include/util/cow-ptr.H → src/util/include/util/cow-ptr.hh
- src/util/include/util/demangle.H → src/util/include/util/demangle.hh
- + src/util/include/util/dense-matrix.hh
- src/util/include/util/file-paths.H → src/util/include/util/file-paths.hh
- src/util/include/util/file-readers.H → src/util/include/util/file-readers.hh
- src/util/include/util/graph.H → src/util/include/util/graph.hh
- src/util/include/util/index_value.H → src/util/include/util/index_value.hh
- + src/util/include/util/intrusive-counted.hh
- src/util/include/util/io.H → src/util/include/util/io.hh
- src/util/include/util/io/matrix.H → src/util/include/util/io/matrix.hh
- src/util/include/util/io/optional.H → src/util/include/util/io/optional.hh
- src/util/include/util/io/vector.H → src/util/include/util/io/vector.hh
- src/util/include/util/list.H → src/util/include/util/list.hh
- src/util/include/util/log-level.H → src/util/include/util/log-level.hh
- src/util/include/util/map.H → src/util/include/util/map.hh
- src/util/include/util/mapping.H → src/util/include/util/mapping.hh
- + src/util/include/util/math/LogDensity.h
- + src/util/include/util/math/ProbDensity.hh
- − src/util/include/util/math/log-double.H
- + src/util/include/util/math/log-double.hh
- src/util/include/util/math/logsum.H → src/util/include/util/math/logsum.hh
- + src/util/include/util/math/neumaier.hh
- src/util/include/util/matrix.H → src/util/include/util/matrix.hh
- src/util/include/util/myexception.H → src/util/include/util/myexception.hh
- src/util/include/util/owned-ptr.H → src/util/include/util/owned-ptr.hh
- src/util/include/util/permute.H → src/util/include/util/permute.hh
- src/util/include/util/ptree.H → src/util/include/util/ptree.hh
- src/util/include/util/range.H → src/util/include/util/range.hh
- src/util/include/util/ref_counted.H → src/util/include/util/ref_counted.hh
- src/util/include/util/rng.H → src/util/include/util/rng.hh
- src/util/include/util/set.H → src/util/include/util/set.hh
- src/util/include/util/settings.H → src/util/include/util/settings.hh
- src/util/include/util/string/convert.H → src/util/include/util/string/convert.hh
- src/util/include/util/string/join.H → src/util/include/util/string/join.hh
- src/util/include/util/string/pred.H → src/util/include/util/string/pred.hh
- src/util/include/util/string/sanitize.H → src/util/include/util/string/sanitize.hh
- src/util/include/util/string/split.H → src/util/include/util/string/split.hh
- src/util/include/util/string/strip.H → src/util/include/util/string/strip.hh
- src/util/include/util/text.H → src/util/include/util/text.hh
- src/util/include/util/time.H → src/util/include/util/time.hh
- src/util/include/util/truncate.H → src/util/include/util/truncate.hh
- + src/util/include/util/unicode.hh
- + src/util/include/util/utf8.hh
- src/util/include/util/variant.H → src/util/include/util/variant.hh
- src/util/include/util/wrap.H → src/util/include/util/wrap.hh
- src/util/io.cc
- src/util/log-level.cc
- src/util/mapping.cc
- src/util/meson.build
- src/util/myexception.cc
- src/util/permute.cc
- src/util/ptree.cc
- src/util/range.cc
- src/util/rng.cc
- src/util/settings.cc
- src/util/string/pred.cc
- src/util/string/sanitize.cc
- src/util/string/split.cc
- src/util/string/strip.cc
- src/util/text.cc
- src/util/time.cc
- + src/util/unicode.cc
- + src/util/utf8.cc
- src/version.cc
- src/version.H → src/version.hh
- + subprojects/cli11.wrap
- subprojects/eigen.wrap
- subprojects/fmt.wrap
- + subprojects/utf8proc.wrap
- + subprojects/xxhash.wrap
- + subprojects/zstd.wrap
- + tests/IO/AA/command.txt
- + tests/IO/AA/test.fasta
- − tests/IO/errors/Codons/1/command.txt
- − tests/IO/errors/Codons/1/error
- − tests/IO/errors/Codons/1/test.fasta
- tests/IO/errors/Codons/2/command.txt
- tests/IO/errors/Codons/2/error
- tests/IO/errors/Codons/2/test.fasta
- tests/IO/errors/Codons/3/error
- tests/IO/errors/Codons/AUTGC/error
- tests/IO/errors/Codons/stop/1/error
- tests/IO/errors/Codons/stop/2/error
- tests/IO/errors/DNA-RNA/1/error
- tests/IO/errors/DNA-RNA/2/error
- tests/IO/errors/DNA-RNA/3/error
- tests/IO/errors/Triplets/1/error
- tests/IO/errors/Triplets/2/error
- tests/IO/errors/Triplets/AUTGC/error
- − tests/PartialSelfing/diploid.andro.multi_theta.BP.hs
- − tests/PartialSelfing/diploid.andro.multi_theta.TCb.hs
- − tests/PartialSelfing/diploid.multi_theta.TC.hs
- − tests/PartialSelfing/diploid.multi_theta.menziesii.hs
- − tests/PartialSelfing/diploid.null.multi_theta.TCb.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.BP.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.DC.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.NNKB.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.TC.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.TCa.hs
- − tests/PartialSelfing/diploid.pure_herm.multi_theta.TCb.hs
- − tests/PartialSelfing/diploid.pure_herm.single_theta.BP.hs
- − tests/PartialSelfing/diploid.pure_herm.single_theta.DC.hs
- − tests/PartialSelfing/diploid.pure_herm.single_theta.NNKB2.hs
- − tests/PartialSelfing/diploid.pure_herm.single_theta.NNKB3.hs
- − tests/PartialSelfing/firstallele.pure_herm.multi_theta.BP.hs
- + tests/cpp/alignment/ambiguity-tests.cc
- + tests/cpp/alignment/character-property-sample-file-tests.cc
- + tests/cpp/alignment/meson.build
- + tests/cpp/computation/closure-tests.cc
- + tests/cpp/computation/computation-test-main.cc
- + tests/cpp/computation/cpp-tests.cc
- + tests/cpp/computation/equality-tests.cc
- + tests/cpp/computation/lexer-tests.cc
- + tests/cpp/computation/meson.build
- + tests/cpp/computation/run-on-windows.py
- + tests/cpp/computation/serialization-tests.cc
- + tests/cpp/computation/transform-tests.cc
- + tests/cpp/mcmc/meson.build
- + tests/cpp/mcmc/slice-sampling-tests.cc
- + tests/cpp/meson.build
- + tests/cpp/probability/choice-weight-tests.cc
- + tests/cpp/probability/meson.build
- + tests/cpp/test-util.hh
- + tests/cpp/util/meson.build
- + tests/cpp/util/text-tests.cc
- − tests/data/Primates.nex
- + tests/haskell/Bio/Alignment/ComponentStateSequence/Main.hs
- + tests/haskell/Bio/Alignment/ComponentStateSequence/command.txt
- + tests/haskell/Bio/Alignment/ComponentStateSequence/output
- + tests/haskell/Bio/Alignment/CompressionNativeVectors/Main.hs
- + tests/haskell/Bio/Alignment/CompressionNativeVectors/command.txt
- + tests/haskell/Bio/Alignment/CompressionNativeVectors/output
- + tests/haskell/Bio/Alphabet/CodonTranslation/Main.hs
- + tests/haskell/Bio/Alphabet/CodonTranslation/command.txt
- + tests/haskell/Bio/Alphabet/CodonTranslation/output
- + tests/haskell/CPP/CommandLine/Main.hs
- + tests/haskell/CPP/CommandLine/command.txt
- + tests/haskell/CPP/CommandLine/output
- + tests/haskell/CPP/Conditionals/Main.hs
- + tests/haskell/CPP/Conditionals/command.txt
- + tests/haskell/CPP/Disabled/Main.hs
- + tests/haskell/CPP/Disabled/command.txt
- tests/IO/errors/Codons/1/exit → tests/haskell/CPP/Disabled/exit
- + tests/haskell/Classes/DefaultSignatures/Basic/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Basic/command.txt
- + tests/haskell/Classes/DefaultSignatures/Disabled/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Disabled/command.txt
- + tests/haskell/Classes/DefaultSignatures/Disabled/error
- + tests/haskell/Classes/DefaultSignatures/Disabled/exit
- + tests/haskell/Classes/DefaultSignatures/Duplicate/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Duplicate/command.txt
- + tests/haskell/Classes/DefaultSignatures/Duplicate/error
- + tests/haskell/Classes/DefaultSignatures/Duplicate/exit
- + tests/haskell/Classes/DefaultSignatures/Forall/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Forall/command.txt
- + tests/haskell/Classes/DefaultSignatures/Imported/DefaultClass.hs
- + tests/haskell/Classes/DefaultSignatures/Imported/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Imported/command.txt
- + tests/haskell/Classes/DefaultSignatures/Mismatch/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Mismatch/command.txt
- + tests/haskell/Classes/DefaultSignatures/Mismatch/error
- + tests/haskell/Classes/DefaultSignatures/Mismatch/exit
- + tests/haskell/Classes/DefaultSignatures/MissingBinding/Main.hs
- + tests/haskell/Classes/DefaultSignatures/MissingBinding/command.txt
- + tests/haskell/Classes/DefaultSignatures/MissingBinding/error
- + tests/haskell/Classes/DefaultSignatures/MissingBinding/exit
- + tests/haskell/Classes/DefaultSignatures/MissingOrdinary/Main.hs
- + tests/haskell/Classes/DefaultSignatures/MissingOrdinary/command.txt
- + tests/haskell/Classes/DefaultSignatures/MissingOrdinary/error
- + tests/haskell/Classes/DefaultSignatures/MissingOrdinary/exit
- + tests/haskell/Classes/DefaultSignatures/NestedMismatch/Main.hs
- + tests/haskell/Classes/DefaultSignatures/NestedMismatch/command.txt
- + tests/haskell/Classes/DefaultSignatures/NestedMismatch/error
- + tests/haskell/Classes/DefaultSignatures/NestedMismatch/exit
- + tests/haskell/Classes/DefaultSignatures/OutsideClass/Main.hs
- + tests/haskell/Classes/DefaultSignatures/OutsideClass/command.txt
- + tests/haskell/Classes/DefaultSignatures/OutsideClass/exit
- + tests/haskell/Classes/DefaultSignatures/Unsatisfied/Main.hs
- + tests/haskell/Classes/DefaultSignatures/Unsatisfied/command.txt
- + tests/haskell/Classes/DefaultSignatures/Unsatisfied/error
- + tests/haskell/Classes/DefaultSignatures/Unsatisfied/exit
- + tests/haskell/Classes/EmptyNoWhere/Main.hs
- + tests/haskell/Classes/EmptyNoWhere/command.txt
- + tests/haskell/Classes/EmptyNoWhere/output
- + tests/haskell/Classes/EmptyWhere/Main.hs
- + tests/haskell/Classes/EmptyWhere/command.txt
- + tests/haskell/Classes/EmptyWhere/output
- + tests/haskell/Coerce/Basic/Main.hs
- + tests/haskell/Coerce/Basic/command.txt
- + tests/haskell/Coerce/Basic/output
- + tests/haskell/Coerce/NominalFamily/Main.hs
- + tests/haskell/Coerce/NominalFamily/command.txt
- + tests/haskell/Coerce/NominalFamily/error
- + tests/haskell/Coerce/NominalFamily/exit
- + tests/haskell/Coerce/RecursiveRoles/Main.hs
- + tests/haskell/Coerce/RecursiveRoles/command.txt
- + tests/haskell/Coerce/RecursiveRoles/output
- + tests/haskell/CompatibilityModules/Main.hs
- + tests/haskell/CompatibilityModules/command.txt
- + tests/haskell/CompatibilityModules/output
- + tests/haskell/CoreNonRec/ProvenProducers/Main.hs
- + tests/haskell/CoreNonRec/ProvenProducers/command.txt
- + tests/haskell/CoreNonRec/ProvenProducers/output
- + tests/haskell/Data/Array/AccumFinalStrict/Main.hs
- + tests/haskell/Data/Array/AccumFinalStrict/command.txt
- + tests/haskell/Data/Array/AccumFinalStrict/error
- + tests/haskell/Data/Array/AccumFinalStrict/exit
- + tests/haskell/Data/Array/AccumInvalid/Main.hs
- + tests/haskell/Data/Array/AccumInvalid/command.txt
- + tests/haskell/Data/Array/AccumInvalid/error
- + tests/haskell/Data/Array/AccumInvalid/exit
- + tests/haskell/Data/Array/AccumSpine/Main.hs
- + tests/haskell/Data/Array/AccumSpine/command.txt
- + tests/haskell/Data/Array/AccumSpine/error
- + tests/haskell/Data/Array/AccumSpine/exit
- + tests/haskell/Data/Array/AccumStrict/Main.hs
- + tests/haskell/Data/Array/AccumStrict/command.txt
- + tests/haskell/Data/Array/AccumStrict/error
- + tests/haskell/Data/Array/AccumStrict/exit
- + tests/haskell/Data/Array/AssociationSpine/Main.hs
- + tests/haskell/Data/Array/AssociationSpine/command.txt
- + tests/haskell/Data/Array/AssociationSpine/error
- + tests/haskell/Data/Array/AssociationSpine/exit
- + tests/haskell/Data/Array/IndexOutOfRange/Main.hs
- + tests/haskell/Data/Array/IndexOutOfRange/command.txt
- + tests/haskell/Data/Array/IndexOutOfRange/error
- + tests/haskell/Data/Array/IndexOutOfRange/exit
- + tests/haskell/Data/Array/IndexOutOfRange/output
- + tests/haskell/Data/Array/InvalidAssociation/Main.hs
- + tests/haskell/Data/Array/InvalidAssociation/command.txt
- + tests/haskell/Data/Array/InvalidAssociation/error
- + tests/haskell/Data/Array/InvalidAssociation/exit
- + tests/haskell/Data/Array/InvalidAssociation/output
- + tests/haskell/Data/Array/InvalidIxOffset/Main.hs
- + tests/haskell/Data/Array/InvalidIxOffset/command.txt
- + tests/haskell/Data/Array/InvalidIxOffset/error
- + tests/haskell/Data/Array/InvalidIxOffset/exit
- + tests/haskell/Data/Array/IxMapInvalid/Main.hs
- + tests/haskell/Data/Array/IxMapInvalid/command.txt
- + tests/haskell/Data/Array/IxMapInvalid/error
- + tests/haskell/Data/Array/IxMapInvalid/exit
- + tests/haskell/Data/Array/MissingElement/Main.hs
- + tests/haskell/Data/Array/MissingElement/command.txt
- + tests/haskell/Data/Array/MissingElement/error
- + tests/haskell/Data/Array/MissingElement/exit
- + tests/haskell/Data/Array/MissingElement/output
- + tests/haskell/Data/Array/Runtime/Main.hs
- + tests/haskell/Data/Array/Runtime/command.txt
- + tests/haskell/Data/Array/Runtime/output
- + tests/haskell/Data/Array/ShortListMissing/Main.hs
- + tests/haskell/Data/Array/ShortListMissing/command.txt
- + tests/haskell/Data/Array/ShortListMissing/error
- + tests/haskell/Data/Array/ShortListMissing/exit
- + tests/haskell/Data/Array/ShortListMissing/output
- + tests/haskell/Data/Array/TupleIndexOutOfRange/Main.hs
- + tests/haskell/Data/Array/TupleIndexOutOfRange/command.txt
- + tests/haskell/Data/Array/TupleIndexOutOfRange/error
- + tests/haskell/Data/Array/TupleIndexOutOfRange/exit
- + tests/haskell/Data/Array/UpdateInvalid/Main.hs
- + tests/haskell/Data/Array/UpdateInvalid/command.txt
- + tests/haskell/Data/Array/UpdateInvalid/error
- + tests/haskell/Data/Array/UpdateInvalid/exit
- + tests/haskell/Data/Array/UpdateSpine/Main.hs
- + tests/haskell/Data/Array/UpdateSpine/command.txt
- + tests/haskell/Data/Array/UpdateSpine/error
- + tests/haskell/Data/Array/UpdateSpine/exit
- + tests/haskell/Data/Bit/Unboxed/Main.hs
- + tests/haskell/Data/Bit/Unboxed/command.txt
- + tests/haskell/Data/Bit/Unboxed/output
- + tests/haskell/Data/ByteString/Main.hs
- + tests/haskell/Data/ByteString/command.txt
- + tests/haskell/Data/ByteString/output
- + tests/haskell/Data/Char/Basic/Main.hs
- + tests/haskell/Data/Char/Basic/command.txt
- + tests/haskell/Data/Char/Basic/output
- + tests/haskell/Data/Char/IntToDigitAbove/Main.hs
- + tests/haskell/Data/Char/IntToDigitAbove/command.txt
- + tests/haskell/Data/Char/IntToDigitAbove/error
- + tests/haskell/Data/Char/IntToDigitAbove/exit
- + tests/haskell/Data/Char/IntToDigitBelow/Main.hs
- + tests/haskell/Data/Char/IntToDigitBelow/command.txt
- + tests/haskell/Data/Char/IntToDigitBelow/error
- + tests/haskell/Data/Char/IntToDigitBelow/exit
- + tests/haskell/Data/IntMap/FromDistinctDuplicateKeys/Main.hs
- + tests/haskell/Data/IntMap/FromDistinctDuplicateKeys/command.txt
- + tests/haskell/Data/IntMap/FromDistinctDuplicateKeys/error
- + tests/haskell/Data/IntMap/FromDistinctDuplicateKeys/exit
- + tests/haskell/Data/IntMap/FromDistinctKeysAndValues/Main.hs
- + tests/haskell/Data/IntMap/FromDistinctKeysAndValues/command.txt
- + tests/haskell/Data/IntMap/FromDistinctLengthMismatch/Main.hs
- + tests/haskell/Data/IntMap/FromDistinctLengthMismatch/command.txt
- + tests/haskell/Data/IntMap/FromDistinctLengthMismatch/error
- + tests/haskell/Data/IntMap/FromDistinctLengthMismatch/exit
- tests/haskell/Data/IntMap/Main.hs
- tests/haskell/Data/IntMap/output
- tests/haskell/Data/IntSet/Main.hs
- + tests/haskell/Data/IntSet/output
- + tests/haskell/Data/Ix/DerivedEnumIndexOutOfRange/Main.hs
- + tests/haskell/Data/Ix/DerivedEnumIndexOutOfRange/command.txt
- + tests/haskell/Data/Ix/DerivedEnumIndexOutOfRange/error
- + tests/haskell/Data/Ix/DerivedEnumIndexOutOfRange/exit
- + tests/haskell/Data/Ix/DerivedIndexOutOfRange/Main.hs
- + tests/haskell/Data/Ix/DerivedIndexOutOfRange/command.txt
- + tests/haskell/Data/Ix/DerivedIndexOutOfRange/error
- + tests/haskell/Data/Ix/DerivedIndexOutOfRange/exit
- + tests/haskell/Data/Ix/DerivedRangeOverflow/Main.hs
- + tests/haskell/Data/Ix/DerivedRangeOverflow/command.txt
- + tests/haskell/Data/Ix/DerivedRangeOverflow/error
- + tests/haskell/Data/Ix/DerivedRangeOverflow/exit
- + tests/haskell/Data/Ix/IndexOutOfRange/Main.hs
- + tests/haskell/Data/Ix/IndexOutOfRange/command.txt
- + tests/haskell/Data/Ix/IndexOutOfRange/error
- + tests/haskell/Data/Ix/IndexOutOfRange/exit
- + tests/haskell/Data/Ix/RangeOverflow/Main.hs
- + tests/haskell/Data/Ix/RangeOverflow/command.txt
- + tests/haskell/Data/Ix/RangeOverflow/error
- + tests/haskell/Data/Ix/RangeOverflow/exit
- + tests/haskell/Data/Ix/Semantics/Main.hs
- + tests/haskell/Data/Ix/Semantics/command.txt
- + tests/haskell/Data/Ix/Semantics/output
- + tests/haskell/Data/JSON/Main.hs
- + tests/haskell/Data/JSON/command.txt
- + tests/haskell/Data/JSON/output
- tests/haskell/Data/Map/Main.hs
- tests/haskell/Data/Map/output
- + tests/haskell/Data/Semigroup/MinMax/Main.hs
- + tests/haskell/Data/Semigroup/MinMax/command.txt
- + tests/haskell/Data/Semigroup/MinMax/output
- + tests/haskell/Data/Set/Main.hs
- + tests/haskell/Data/Set/command.txt
- + tests/haskell/Data/Set/output
- + tests/haskell/Data/Text/Encoding/Main.hs
- + tests/haskell/Data/Text/Encoding/command.txt
- + tests/haskell/Data/Text/Encoding/output
- + tests/haskell/Data/Text/Unicode/Main.hs
- + tests/haskell/Data/Text/Unicode/command.txt
- + tests/haskell/Data/Text/Unicode/input.txt
- + tests/haskell/Data/Text/Unicode/output
- + tests/haskell/Data/Vector/AppendStrictness/Main.hs
- + tests/haskell/Data/Vector/AppendStrictness/command.txt
- + tests/haskell/Data/Vector/AppendStrictness/error
- + tests/haskell/Data/Vector/AppendStrictness/exit
- + tests/haskell/Data/Vector/IndexErrors/Main.hs
- + tests/haskell/Data/Vector/IndexErrors/command.txt
- + tests/haskell/Data/Vector/IndexErrors/exit
- + tests/haskell/Data/Vector/IndexErrors/output
- + tests/haskell/Data/Vector/ReplicateNegative/Main.hs
- + tests/haskell/Data/Vector/ReplicateNegative/command.txt
- + tests/haskell/Data/Vector/ReplicateNegative/error
- + tests/haskell/Data/Vector/ReplicateNegative/exit
- + tests/haskell/Data/Vector/Runtime/Main.hs
- + tests/haskell/Data/Vector/Runtime/command.txt
- + tests/haskell/Data/Vector/Runtime/output
- + tests/haskell/Data/Vector/Unboxed/IndexError/Main.hs
- + tests/haskell/Data/Vector/Unboxed/IndexError/command.txt
- + tests/haskell/Data/Vector/Unboxed/IndexError/error
- + tests/haskell/Data/Vector/Unboxed/IndexError/exit
- + tests/haskell/Data/Vector/Unboxed/NativeTreePath/Main.hs
- + tests/haskell/Data/Vector/Unboxed/NativeTreePath/command.txt
- + tests/haskell/Data/Vector/Unboxed/NativeTreePath/output
- + tests/haskell/Data/Vector/Unboxed/ReplicateNegative/Main.hs
- + tests/haskell/Data/Vector/Unboxed/ReplicateNegative/command.txt
- + tests/haskell/Data/Vector/Unboxed/ReplicateNegative/error
- + tests/haskell/Data/Vector/Unboxed/ReplicateNegative/exit
- + tests/haskell/Data/Vector/Unboxed/SliceError/Main.hs
- + tests/haskell/Data/Vector/Unboxed/SliceError/command.txt
- + tests/haskell/Data/Vector/Unboxed/SliceError/error
- + tests/haskell/Data/Vector/Unboxed/SliceError/exit
- + tests/haskell/Data/Word/Word8/Main.hs
- + tests/haskell/Data/Word/Word8/command.txt
- + tests/haskell/Data/Word/Word8/output
- + tests/haskell/Deriving/AnyClass/Main.hs
- + tests/haskell/Deriving/AnyClass/command.txt
- + tests/haskell/Deriving/AnyClass/output
- + tests/haskell/Deriving/Bounded/Main.hs
- + tests/haskell/Deriving/Bounded/command.txt
- + tests/haskell/Deriving/Bounded/output
- + tests/haskell/Deriving/BoundedMissingField/Main.hs
- + tests/haskell/Deriving/BoundedMissingField/command.txt
- + tests/haskell/Deriving/BoundedMissingField/error
- + tests/haskell/Deriving/BoundedMissingField/exit
- + tests/haskell/Deriving/BoundedMultiProduct/Main.hs
- + tests/haskell/Deriving/BoundedMultiProduct/command.txt
- + tests/haskell/Deriving/BoundedMultiProduct/error
- + tests/haskell/Deriving/BoundedMultiProduct/exit
- + tests/haskell/Deriving/Enum/Main.hs
- + tests/haskell/Deriving/Enum/command.txt
- + tests/haskell/Deriving/Enum/output
- + tests/haskell/Deriving/EnumProduct/Main.hs
- + tests/haskell/Deriving/EnumProduct/command.txt
- + tests/haskell/Deriving/EnumProduct/error
- + tests/haskell/Deriving/EnumProduct/exit
- + tests/haskell/Deriving/Eq/Main.hs
- + tests/haskell/Deriving/Eq/command.txt
- + tests/haskell/Deriving/Eq/output
- + tests/haskell/Deriving/EqFieldInstance/Main.hs
- + tests/haskell/Deriving/EqFieldInstance/command.txt
- + tests/haskell/Deriving/EqFieldInstance/output
- + tests/haskell/Deriving/EqMissingField/Main.hs
- + tests/haskell/Deriving/EqMissingField/command.txt
- + tests/haskell/Deriving/EqMissingField/error
- + tests/haskell/Deriving/EqMissingField/exit
- + tests/haskell/Deriving/GND/Main.hs
- + tests/haskell/Deriving/GND/command.txt
- + tests/haskell/Deriving/GND/output
- + tests/haskell/Deriving/GNDRoleFailure/Main.hs
- + tests/haskell/Deriving/GNDRoleFailure/command.txt
- + tests/haskell/Deriving/GNDRoleFailure/error
- + tests/haskell/Deriving/GNDRoleFailure/exit
- + tests/haskell/Deriving/GNDUnsupportedAssociatedData/Main.hs
- + tests/haskell/Deriving/GNDUnsupportedAssociatedData/command.txt
- + tests/haskell/Deriving/GNDUnsupportedAssociatedData/error
- + tests/haskell/Deriving/GNDUnsupportedAssociatedData/exit
- + tests/haskell/Deriving/Ix/Main.hs
- + tests/haskell/Deriving/Ix/command.txt
- + tests/haskell/Deriving/Ix/output
- + tests/haskell/Deriving/Ord/Main.hs
- + tests/haskell/Deriving/Ord/command.txt
- + tests/haskell/Deriving/Ord/output
- + tests/haskell/Deriving/OrdMissingField/Main.hs
- + tests/haskell/Deriving/OrdMissingField/command.txt
- + tests/haskell/Deriving/OrdMissingField/error
- + tests/haskell/Deriving/OrdMissingField/exit
- + tests/haskell/Deriving/Read/Main.hs
- + tests/haskell/Deriving/Read/command.txt
- + tests/haskell/Deriving/Read/output
- + tests/haskell/Deriving/ShadowEq/Main.hs
- + tests/haskell/Deriving/ShadowEq/command.txt
- + tests/haskell/Deriving/ShadowEq/error
- + tests/haskell/Deriving/ShadowEq/exit
- + tests/haskell/Deriving/Show/Main.hs
- + tests/haskell/Deriving/Show/command.txt
- + tests/haskell/Deriving/Show/output
- + tests/haskell/Deriving/ShowMissingField/Main.hs
- + tests/haskell/Deriving/ShowMissingField/command.txt
- + tests/haskell/Deriving/ShowMissingField/error
- + tests/haskell/Deriving/ShowMissingField/exit
- + tests/haskell/Deriving/Standalone/Main.hs
- + tests/haskell/Deriving/Standalone/command.txt
- + tests/haskell/Deriving/Standalone/output
- + tests/haskell/Deriving/StandaloneEqImported/EqSupport.hs
- + tests/haskell/Deriving/StandaloneEqImported/Main.hs
- + tests/haskell/Deriving/StandaloneEqImported/command.txt
- + tests/haskell/Deriving/StandaloneEqImported/output
- + tests/haskell/Deriving/StandaloneEqList/Compiler/IO.hs
- + tests/haskell/Deriving/StandaloneEqList/Main.hs
- + tests/haskell/Deriving/StandaloneEqList/command.txt
- + tests/haskell/Deriving/StandaloneEqList/error
- + tests/haskell/Deriving/StandaloneEqList/exit
- + tests/haskell/Deriving/StandaloneReadImported/Main.hs
- + tests/haskell/Deriving/StandaloneReadImported/ReadSupport.hs
- + tests/haskell/Deriving/StandaloneReadImported/command.txt
- + tests/haskell/Deriving/StandaloneReadImported/output
- + tests/haskell/Deriving/StandaloneShowImported/Main.hs
- + tests/haskell/Deriving/StandaloneShowImported/ShowSupport.hs
- + tests/haskell/Deriving/StandaloneShowImported/command.txt
- + tests/haskell/Deriving/StandaloneShowImported/output
- + tests/haskell/Deriving/StockContext/Main.hs
- + tests/haskell/Deriving/StockContext/command.txt
- + tests/haskell/Deriving/StockContext/output
- + tests/haskell/Deriving/Strategies/Main.hs
- + tests/haskell/Deriving/Strategies/command.txt
- + tests/haskell/Deriving/Strategies/output
- + tests/haskell/Deriving/Via/Main.hs
- + tests/haskell/Deriving/Via/command.txt
- + tests/haskell/Deriving/Via/output
- + tests/haskell/Exceptions/EffectHandlerUnwind/Main.hs
- + tests/haskell/Exceptions/EffectHandlerUnwind/command.txt
- + tests/haskell/Exceptions/EffectHandlerUnwind/output
- + tests/haskell/Exceptions/RepeatedCatch/Main.hs
- + tests/haskell/Exceptions/RepeatedCatch/command.txt
- + tests/haskell/Exceptions/RepeatedCatch/output
- + tests/haskell/Foreign/ConstrainedImport/Bpcall/Main.hs
- + tests/haskell/Foreign/ConstrainedImport/Bpcall/command.txt
- + tests/haskell/Foreign/ConstrainedImport/Bpcall/error
- + tests/haskell/Foreign/ConstrainedImport/Bpcall/exit
- + tests/haskell/Foreign/ConstrainedImport/Trcall/Main.hs
- + tests/haskell/Foreign/ConstrainedImport/Trcall/command.txt
- + tests/haskell/Foreign/ConstrainedImport/Trcall/error
- + tests/haskell/Foreign/ConstrainedImport/Trcall/exit
- + tests/haskell/Foreign/CyclicABI/Main.hs
- + tests/haskell/Foreign/CyclicABI/command.txt
- + tests/haskell/Foreign/CyclicABI/error
- + tests/haskell/Foreign/CyclicABI/exit
- + tests/haskell/Foreign/DumpFFI/Main.hs
- + tests/haskell/Foreign/DumpFFI/command.txt
- + tests/haskell/Foreign/DumpFFI/error
- + tests/haskell/Foreign/ImportABIReport/Main.hs
- + tests/haskell/Foreign/ImportABIReport/command.txt
- + tests/haskell/Foreign/ImportABIReport/error
- + tests/haskell/Foreign/ImportBoundary/Main.hs
- + tests/haskell/Foreign/ImportBoundary/command.txt
- + tests/haskell/Foreign/ImportBoundary/output
- + tests/haskell/Foreign/ImportPolymorphicResult/Main.hs
- + tests/haskell/Foreign/ImportPolymorphicResult/command.txt
- + tests/haskell/Foreign/ImportPolymorphicResult/exit
- + tests/haskell/Foreign/ImportWrapper/Main.hs
- + tests/haskell/Foreign/ImportWrapper/command.txt
- + tests/haskell/Foreign/ImportWrapper/output
- + tests/haskell/Foreign/IrreducibleABI/Main.hs
- + tests/haskell/Foreign/IrreducibleABI/command.txt
- + tests/haskell/Foreign/IrreducibleABI/error
- + tests/haskell/Foreign/IrreducibleABI/exit
- + tests/haskell/Foreign/MissingTranslationInstance/Main.hs
- + tests/haskell/Foreign/MissingTranslationInstance/command.txt
- + tests/haskell/Foreign/MissingTranslationInstance/exit
- + tests/haskell/Foreign/NativeVectorInputInvalidRange/Main.hs
- + tests/haskell/Foreign/NativeVectorInputInvalidRange/command.txt
- + tests/haskell/Foreign/NativeVectorInputInvalidRange/error
- + tests/haskell/Foreign/NativeVectorInputInvalidRange/exit
- + tests/haskell/Foreign/PolymorphicTrcall/Main.hs
- + tests/haskell/Foreign/PolymorphicTrcall/command.txt
- + tests/haskell/Foreign/RuntimeValue/Main.hs
- + tests/haskell/Foreign/RuntimeValue/command.txt
- + tests/haskell/Foreign/RuntimeValue/output
- + tests/haskell/Foreign/RuntimeValueInvalid/Main.hs
- + tests/haskell/Foreign/RuntimeValueInvalid/command.txt
- + tests/haskell/Foreign/RuntimeValueInvalid/exit
- + tests/haskell/Foreign/String/CppSubStringBounds/Main.hs
- + tests/haskell/Foreign/String/CppSubStringBounds/command.txt
- + tests/haskell/Foreign/String/CppSubStringBounds/error
- + tests/haskell/Foreign/String/CppSubStringBounds/exit
- + tests/haskell/Foreign/TypeFamilyABI/ImportedABI.hs
- + tests/haskell/Foreign/TypeFamilyABI/Main.hs
- + tests/haskell/Foreign/TypeFamilyABI/command.txt
- + tests/haskell/Foreign/TypeFamilyABI/output
- + tests/haskell/Foreign/TypeFamilyABIReport/Main.hs
- + tests/haskell/Foreign/TypeFamilyABIReport/command.txt
- + tests/haskell/Foreign/TypeFamilyABIReport/error
- tests/haskell/IO/1/Main.hs
- tests/haskell/IO/3/Main.hs
- + tests/haskell/IO/FileWrites/Main.hs
- + tests/haskell/IO/FileWrites/command.txt
- + tests/haskell/IO/FileWrites/output
- + tests/haskell/IO/UnicodeChar/Main.hs
- + tests/haskell/IO/UnicodeChar/command.txt
- + tests/haskell/IO/UnicodeChar/input.txt
- + tests/haskell/IO/UnicodeChar/output
- + tests/haskell/Imports/QualifiedPost/ImportQualifiedPostSupport.hs
- + tests/haskell/Imports/QualifiedPost/Main.hs
- + tests/haskell/Imports/QualifiedPost/command.txt
- + tests/haskell/Imports/QualifiedPost/output
- + tests/haskell/Imports/QualifiedPostDisabled/ImportQualifiedPostSupport.hs
- + tests/haskell/Imports/QualifiedPostDisabled/Main.hs
- + tests/haskell/Imports/QualifiedPostDisabled/command.txt
- + tests/haskell/Imports/QualifiedPostDisabled/error
- + tests/haskell/Imports/QualifiedPostDisabled/exit
- + tests/haskell/Imports/QualifiedPostDuplicate/ImportQualifiedPostSupport.hs
- + tests/haskell/Imports/QualifiedPostDuplicate/Main.hs
- + tests/haskell/Imports/QualifiedPostDuplicate/command.txt
- + tests/haskell/Imports/QualifiedPostDuplicate/error
- + tests/haskell/Imports/QualifiedPostDuplicate/exit
- + tests/haskell/InfixConflict/Main.hs
- + tests/haskell/InfixConflict/command.txt
- + tests/haskell/InfixConflict/error
- + tests/haskell/InfixConflict/exit
- + tests/haskell/InfixDeclLHS/ExtraVarOp/Main.hs
- + tests/haskell/InfixDeclLHS/ExtraVarOp/command.txt
- + tests/haskell/InfixDeclLHS/ExtraVarOp/error
- + tests/haskell/InfixDeclLHS/ExtraVarOp/exit
- + tests/haskell/InfixDeclLHS/Mixed/Main.hs
- + tests/haskell/InfixDeclLHS/Mixed/command.txt
- + tests/haskell/InfixDeclLHS/Mixed/output
- + tests/haskell/InfixLocalFixity/CaseShadow/Main.hs
- + tests/haskell/InfixLocalFixity/CaseShadow/command.txt
- + tests/haskell/InfixLocalFixity/CaseShadow/output
- + tests/haskell/InfixLocalFixity/DoShadow/Main.hs
- + tests/haskell/InfixLocalFixity/DoShadow/command.txt
- + tests/haskell/InfixLocalFixity/DoShadow/output
- + tests/haskell/InfixLocalFixity/Duplicate/Main.hs
- + tests/haskell/InfixLocalFixity/Duplicate/command.txt
- + tests/haskell/InfixLocalFixity/Duplicate/exit
- + tests/haskell/InfixLocalFixity/LambdaShadow/Main.hs
- + tests/haskell/InfixLocalFixity/LambdaShadow/command.txt
- + tests/haskell/InfixLocalFixity/LambdaShadow/output
- + tests/haskell/InfixLocalFixity/Let/Main.hs
- + tests/haskell/InfixLocalFixity/Let/command.txt
- + tests/haskell/InfixLocalFixity/Let/output
- + tests/haskell/InfixLocalFixity/LetBindingShadow/Main.hs
- + tests/haskell/InfixLocalFixity/LetBindingShadow/command.txt
- + tests/haskell/InfixLocalFixity/LetBindingShadow/output
- + tests/haskell/InfixLocalFixity/LetShadow/Main.hs
- + tests/haskell/InfixLocalFixity/LetShadow/command.txt
- + tests/haskell/InfixLocalFixity/LetShadow/output
- + tests/haskell/InfixLocalFixity/MDoShadow/Main.hs
- + tests/haskell/InfixLocalFixity/MDoShadow/command.txt
- + tests/haskell/InfixLocalFixity/MDoShadow/output
- + tests/haskell/InfixLocalFixity/MissingBinding/Main.hs
- + tests/haskell/InfixLocalFixity/MissingBinding/command.txt
- + tests/haskell/InfixLocalFixity/MissingBinding/exit
- + tests/haskell/InfixLocalFixity/QualifiedOperator/Main.hs
- + tests/haskell/InfixLocalFixity/QualifiedOperator/command.txt
- + tests/haskell/InfixLocalFixity/QualifiedOperator/output
- + tests/haskell/InfixLocalFixity/RecShadow/Main.hs
- + tests/haskell/InfixLocalFixity/RecShadow/command.txt
- + tests/haskell/InfixLocalFixity/RecShadow/output
- + tests/haskell/InfixLocalFixity/TopMissingBinding/Main.hs
- + tests/haskell/InfixLocalFixity/TopMissingBinding/command.txt
- + tests/haskell/InfixLocalFixity/TopMissingBinding/exit
- + tests/haskell/LanguageExtensions/LegacyInstanceOptions/Main.hs
- + tests/haskell/LanguageExtensions/LegacyInstanceOptions/Negative.hs
- + tests/haskell/LanguageExtensions/LegacyInstanceOptions/Positive.hs
- + tests/haskell/LanguageExtensions/LegacyInstanceOptions/command.txt
- + tests/haskell/LanguageExtensions/LegacyInstanceOptions/output
- + tests/haskell/Layout/DestructiveCloseRecovery/Main.hs
- + tests/haskell/Layout/DestructiveCloseRecovery/command.txt
- + tests/haskell/Layout/DestructiveCloseRecovery/error
- + tests/haskell/Layout/DestructiveCloseRecovery/exit
- + tests/haskell/Layout/IfNewlineCondition/Main.hs
- + tests/haskell/Layout/IfNewlineCondition/command.txt
- + tests/haskell/Layout/IfNewlineCondition/output
- + tests/haskell/Layout/ImplicitLetClose/Main.hs
- + tests/haskell/Layout/ImplicitLetClose/command.txt
- + tests/haskell/Layout/ImplicitLetClose/output
- + tests/haskell/Lexer/ASCII/DashSymbols/Main.hs
- + tests/haskell/Lexer/ASCII/DashSymbols/command.txt
- + tests/haskell/Lexer/ASCII/DashSymbols/output
- + tests/haskell/Lexer/ASCII/InvalidEmptyCharEscape/Main.hs
- + tests/haskell/Lexer/ASCII/InvalidEmptyCharEscape/command.txt
- + tests/haskell/Lexer/ASCII/InvalidEmptyCharEscape/error
- + tests/haskell/Lexer/ASCII/InvalidEmptyCharEscape/exit
- + tests/haskell/Lexer/ASCII/InvalidNamedEscape/Main.hs
- + tests/haskell/Lexer/ASCII/InvalidNamedEscape/command.txt
- + tests/haskell/Lexer/ASCII/InvalidNamedEscape/error
- + tests/haskell/Lexer/ASCII/InvalidNamedEscape/exit
- + tests/haskell/Lexer/ASCII/InvalidNumericEscape/Main.hs
- + tests/haskell/Lexer/ASCII/InvalidNumericEscape/command.txt
- + tests/haskell/Lexer/ASCII/InvalidNumericEscape/error
- + tests/haskell/Lexer/ASCII/InvalidNumericEscape/exit
- + tests/haskell/Lexer/ASCII/Literals/Main.hs
- + tests/haskell/Lexer/ASCII/Literals/command.txt
- + tests/haskell/Lexer/ASCII/Literals/output
- + tests/haskell/Lexer/ASCII/NamedEscapes/Main.hs
- + tests/haskell/Lexer/ASCII/NamedEscapes/command.txt
- + tests/haskell/Lexer/ASCII/NamedEscapes/output
- + tests/haskell/Lexer/ASCII/NonDecimalIntegers/Main.hs
- + tests/haskell/Lexer/ASCII/NonDecimalIntegers/command.txt
- + tests/haskell/Lexer/ASCII/NonDecimalIntegers/output
- + tests/haskell/Lexer/ASCII/NumericEscapes/Main.hs
- + tests/haskell/Lexer/ASCII/NumericEscapes/command.txt
- + tests/haskell/Lexer/ASCII/NumericEscapes/output
- + tests/haskell/Lexer/ASCII/RuntimeByteCharGuard/Main.hs
- + tests/haskell/Lexer/ASCII/RuntimeByteCharGuard/command.txt
- + tests/haskell/Lexer/ASCII/RuntimeByteCharGuard/exit
- + tests/haskell/Lexer/ASCII/RuntimeByteCharGuard/output
- + tests/haskell/Lexer/ASCII/StringByteGuard/Main.hs
- + tests/haskell/Lexer/ASCII/StringByteGuard/command.txt
- + tests/haskell/Lexer/ASCII/StringByteGuard/output
- + tests/haskell/Lexer/Adjacency/RecordDotComment/Main.hs
- + tests/haskell/Lexer/Adjacency/RecordDotComment/command.txt
- + tests/haskell/Lexer/Adjacency/RecordDotComment/exit
- + tests/haskell/Lexer/Adjacency/RecordDotNewline/Main.hs
- + tests/haskell/Lexer/Adjacency/RecordDotNewline/command.txt
- + tests/haskell/Lexer/Adjacency/RecordDotNewline/exit
- + tests/haskell/Lexer/Adjacency/RecordDotSpace/Main.hs
- + tests/haskell/Lexer/Adjacency/RecordDotSpace/command.txt
- + tests/haskell/Lexer/Adjacency/RecordDotSpace/exit
- + tests/haskell/Lexer/Adjacency/RecordDotTight/Main.hs
- + tests/haskell/Lexer/Adjacency/RecordDotTight/command.txt
- + tests/haskell/Lexer/Adjacency/RecordDotTight/output
- + tests/haskell/Lexer/Unicode/Identifiers/Main.hs
- + tests/haskell/Lexer/Unicode/Identifiers/UnicodeSupport.hs
- + tests/haskell/Lexer/Unicode/Identifiers/command.txt
- + tests/haskell/Lexer/Unicode/Identifiers/output
- + tests/haskell/Lexer/Unicode/LayoutColumns/Main.hs
- + tests/haskell/Lexer/Unicode/LayoutColumns/command.txt
- + tests/haskell/Lexer/Unicode/LayoutColumns/output
- + tests/haskell/Lexer/Unicode/Literals/Main.hs
- + tests/haskell/Lexer/Unicode/Literals/command.txt
- + tests/haskell/Lexer/Unicode/Literals/output
- + tests/haskell/Lexer/Unicode/QualifiedUnicodeSyntax/Main.hs
- + tests/haskell/Lexer/Unicode/QualifiedUnicodeSyntax/command.txt
- + tests/haskell/Lexer/Unicode/QualifiedUnicodeSyntax/error
- + tests/haskell/Lexer/Unicode/QualifiedUnicodeSyntax/exit
- + tests/haskell/Lexer/Unicode/Symbols/Main.hs
- + tests/haskell/Lexer/Unicode/Symbols/UnicodeOps.hs
- + tests/haskell/Lexer/Unicode/Symbols/command.txt
- + tests/haskell/Lexer/Unicode/Symbols/output
- + tests/haskell/Lexer/Unicode/UnicodeSyntax/Main.hs
- + tests/haskell/Lexer/Unicode/UnicodeSyntax/command.txt
- + tests/haskell/Lexer/Unicode/UnicodeSyntax/output
- + tests/haskell/Lexer/Unicode/UnicodeSyntaxOff/Main.hs
- + tests/haskell/Lexer/Unicode/UnicodeSyntaxOff/UnicodeSyntaxOffSupport.hs
- + tests/haskell/Lexer/Unicode/UnicodeSyntaxOff/command.txt
- + tests/haskell/Lexer/Unicode/UnicodeSyntaxOff/output
- + tests/haskell/Lexer/Unicode/Whitespace/Main.hs
- + tests/haskell/Lexer/Unicode/Whitespace/command.txt
- + tests/haskell/Lexer/Unicode/Whitespace/output
- + tests/haskell/MCMC/BoxedLogProbabilityDependencies/Main.hs
- + tests/haskell/MCMC/BoxedLogProbabilityDependencies/command.txt
- + tests/haskell/MCMC/BoxedLogProbabilityDependencies/output
- + tests/haskell/MCMC/CategoricalSubset/Main.hs
- + tests/haskell/MCMC/CategoricalSubset/command.txt
- + tests/haskell/MCMC/CategoricalSubset/output
- + tests/haskell/MCMC/ConditionalProbability/Main.hs
- + tests/haskell/MCMC/ConditionalProbability/command.txt
- + tests/haskell/MCMC/ConditionalProbability/output
- + tests/haskell/MCMC/ContextConditionalLogger/Main.hs
- + tests/haskell/MCMC/ContextConditionalLogger/command.txt
- + tests/haskell/MCMC/ContextConditionalLogger/output
- + tests/haskell/MCMC/ContextLogger/Main.hs
- + tests/haskell/MCMC/ContextLogger/command.txt
- + tests/haskell/MCMC/ContextLogger/output
- + tests/haskell/MCMC/ContextTSVLogger/Main.hs
- + tests/haskell/MCMC/ContextTSVLogger/command.txt
- + tests/haskell/MCMC/ContextTSVLogger/output
- + tests/haskell/MCMC/DirichletProcessEndpoint/Main.hs
- + tests/haskell/MCMC/DirichletProcessEndpoint/command.txt
- + tests/haskell/MCMC/DirichletProcessEndpoint/output
- + tests/haskell/MCMC/SumOutCoals/Main.hs
- + tests/haskell/MCMC/SumOutCoals/command.txt
- + tests/haskell/MCMC/SumOutCoals/output
- + tests/haskell/MCMC/ZeroProposalRatio/Main.hs
- + tests/haskell/MCMC/ZeroProposalRatio/command.txt
- + tests/haskell/MCMC/ZeroProposalRatio/output
- + tests/haskell/ModelRunOptions/Default/command.txt
- + tests/haskell/ModelRunOptions/Default/output
- + tests/haskell/ModelRunOptions/Help/command.txt
- + tests/haskell/ModelRunOptions/Help/output
- + tests/haskell/ModelRunOptions/Initialize.hs
- + tests/haskell/ModelRunOptions/Main.hs
- + tests/haskell/ModelRunOptions/MissingOutputDirectory/command.txt
- + tests/haskell/ModelRunOptions/MissingOutputDirectory/error
- + tests/haskell/ModelRunOptions/MissingOutputDirectory/exit
- + tests/haskell/ModelRunOptions/MissingOutputDirectory/output
- + tests/haskell/ModelRunOptions/OutputOverridesName/command.txt
- + tests/haskell/ModelRunOptions/OutputOverridesName/output
- + tests/haskell/ModelRunOptions/TestOverridesOutput/command.txt
- + tests/haskell/ModelRunOptions/TestOverridesOutput/output
- + tests/haskell/ModuleCache/Main.hs
- + tests/haskell/MonadTransformers/Main.hs
- + tests/haskell/MonadTransformers/command.txt
- + tests/haskell/MonadTransformers/output
- + tests/haskell/MultiWayIf/Braces/Main.hs
- + tests/haskell/MultiWayIf/Braces/command.txt
- + tests/haskell/MultiWayIf/Braces/output
- + tests/haskell/MultiWayIf/Layout/Main.hs
- + tests/haskell/MultiWayIf/Layout/command.txt
- + tests/haskell/MultiWayIf/Layout/output
- + tests/haskell/MultiWayIf/NoExtension/Main.hs
- + tests/haskell/MultiWayIf/NoExtension/command.txt
- + tests/haskell/MultiWayIf/NoExtension/error
- + tests/haskell/MultiWayIf/NoExtension/exit
- + tests/haskell/NamedDefaults/Agreement/Main.hs
- + tests/haskell/NamedDefaults/Agreement/command.txt
- + tests/haskell/NamedDefaults/Agreement/output
- + tests/haskell/NamedDefaults/ClassResolution/Explicit.hs
- + tests/haskell/NamedDefaults/ClassResolution/Implicit.hs
- + tests/haskell/NamedDefaults/ClassResolution/Main.hs
- + tests/haskell/NamedDefaults/ClassResolution/Qualified.hs
- + tests/haskell/NamedDefaults/ClassResolution/command.txt
- + tests/haskell/NamedDefaults/ClassResolution/output
- + tests/haskell/NamedDefaults/Conflict/Main.hs
- + tests/haskell/NamedDefaults/Conflict/command.txt
- + tests/haskell/NamedDefaults/Conflict/exit
- + tests/haskell/NamedDefaults/ExtendedDeclaration/Main.hs
- + tests/haskell/NamedDefaults/ExtendedDeclaration/command.txt
- + tests/haskell/NamedDefaults/ExtendedDeclaration/output
- + tests/haskell/NamedDefaults/ExtendedRules/Main.hs
- + tests/haskell/NamedDefaults/ExtendedRules/command.txt
- + tests/haskell/NamedDefaults/ExtendedRules/output
- + tests/haskell/NamedDefaults/ExtraConstraints/Main.hs
- + tests/haskell/NamedDefaults/ExtraConstraints/command.txt
- + tests/haskell/NamedDefaults/ExtraConstraints/output
- + tests/haskell/NamedDefaults/LocalCandidate/Main.hs
- + tests/haskell/NamedDefaults/LocalCandidate/command.txt
- + tests/haskell/NamedDefaults/LocalCandidate/output
- + tests/haskell/NamedDefaults/OrderedFallback/Main.hs
- + tests/haskell/NamedDefaults/OrderedFallback/command.txt
- + tests/haskell/NamedDefaults/OrderedFallback/output
- + tests/haskell/NamedDefaults/OverloadedDeclaration/Main.hs
- + tests/haskell/NamedDefaults/OverloadedDeclaration/command.txt
- + tests/haskell/NamedDefaults/OverloadedDeclaration/output
- + tests/haskell/NamedDefaults/Superclass/Main.hs
- + tests/haskell/NamedDefaults/Superclass/command.txt
- + tests/haskell/NamedDefaults/Superclass/output
- + tests/haskell/NamedDefaults/Unrelated/A.hs
- + tests/haskell/NamedDefaults/Unrelated/Main.hs
- + tests/haskell/NamedDefaults/Unrelated/command.txt
- + tests/haskell/NamedDefaults/Unrelated/output
- + tests/haskell/Newtype/AssociatedDataFamily/Main.hs
- + tests/haskell/Newtype/AssociatedDataFamily/command.txt
- + tests/haskell/Newtype/AssociatedDataFamily/output
- + tests/haskell/Newtype/AssociatedDataFamilyInvalidFields/Main.hs
- + tests/haskell/Newtype/AssociatedDataFamilyInvalidFields/command.txt
- + tests/haskell/Newtype/AssociatedDataFamilyInvalidFields/error
- + tests/haskell/Newtype/AssociatedDataFamilyInvalidFields/exit
- + tests/haskell/Newtype/Basic/Main.hs
- + tests/haskell/Newtype/Basic/command.txt
- + tests/haskell/Newtype/Basic/output
- + tests/haskell/Newtype/DataFamily/Main.hs
- + tests/haskell/Newtype/DataFamily/command.txt
- + tests/haskell/Newtype/DataFamily/output
- + tests/haskell/Newtype/DataFamilyGADTMismatch/Main.hs
- + tests/haskell/Newtype/DataFamilyGADTMismatch/command.txt
- + tests/haskell/Newtype/DataFamilyGADTMismatch/error
- + tests/haskell/Newtype/DataFamilyGADTMismatch/exit
- + tests/haskell/Newtype/DataFamilyInvalidFields/Main.hs
- + tests/haskell/Newtype/DataFamilyInvalidFields/command.txt
- + tests/haskell/Newtype/DataFamilyInvalidFields/error
- + tests/haskell/Newtype/DataFamilyInvalidFields/exit
- + tests/haskell/Newtype/GADT/Main.hs
- + tests/haskell/Newtype/GADT/command.txt
- + tests/haskell/Newtype/GADT/output
- + tests/haskell/Newtype/GADTContext/Main.hs
- + tests/haskell/Newtype/GADTContext/command.txt
- + tests/haskell/Newtype/GADTContext/error
- + tests/haskell/Newtype/GADTContext/exit
- + tests/haskell/Newtype/GADTExistential/Main.hs
- + tests/haskell/Newtype/GADTExistential/command.txt
- + tests/haskell/Newtype/GADTExistential/error
- + tests/haskell/Newtype/GADTExistential/exit
- + tests/haskell/Newtype/GADTRefinement/Main.hs
- + tests/haskell/Newtype/GADTRefinement/command.txt
- + tests/haskell/Newtype/GADTRefinement/error
- + tests/haskell/Newtype/GADTRefinement/exit
- + tests/haskell/Newtype/InternalStrictField/Main.hs
- + tests/haskell/Newtype/InternalStrictField/command.txt
- + tests/haskell/Newtype/InternalStrictField/error
- + tests/haskell/Newtype/InternalStrictField/exit
- + tests/haskell/Newtype/InvalidFields/Main.hs
- + tests/haskell/Newtype/InvalidFields/command.txt
- + tests/haskell/Newtype/InvalidFields/error
- + tests/haskell/Newtype/InvalidFields/exit
- + tests/haskell/Newtype/StrictField/Main.hs
- + tests/haskell/Newtype/StrictField/command.txt
- + tests/haskell/Newtype/StrictField/error
- + tests/haskell/Newtype/StrictField/exit
- + tests/haskell/Newtype/StrictGADT/Main.hs
- + tests/haskell/Newtype/StrictGADT/command.txt
- + tests/haskell/Newtype/StrictGADT/error
- + tests/haskell/Newtype/StrictGADT/exit
- + tests/haskell/Numeric/DivMod/Main.hs
- + tests/haskell/Numeric/DivMod/command.txt
- + tests/haskell/Numeric/DivMod/output
- + tests/haskell/Numeric/FloatingDomain/Main.hs
- + tests/haskell/Numeric/FloatingDomain/command.txt
- + tests/haskell/Numeric/FloatingDomain/output
- + tests/haskell/Numeric/LinearAlgebra/Basic/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/Basic/command.txt
- + tests/haskell/Numeric/LinearAlgebra/Basic/output
- + tests/haskell/Numeric/LinearAlgebra/Coerce/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/Coerce/command.txt
- + tests/haskell/Numeric/LinearAlgebra/Coerce/exit
- + tests/haskell/Numeric/LinearAlgebra/DenseConstruction/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/DenseConstruction/command.txt
- + tests/haskell/Numeric/LinearAlgebra/DenseConstruction/output
- + tests/haskell/Numeric/LinearAlgebra/DimensionOverflow/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/DimensionOverflow/command.txt
- + tests/haskell/Numeric/LinearAlgebra/DimensionOverflow/error
- + tests/haskell/Numeric/LinearAlgebra/DimensionOverflow/exit
- + tests/haskell/Numeric/LinearAlgebra/ExcessInput/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/ExcessInput/command.txt
- + tests/haskell/Numeric/LinearAlgebra/ExcessInput/output
- + tests/haskell/Numeric/LinearAlgebra/InfiniteInput/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/InfiniteInput/command.txt
- + tests/haskell/Numeric/LinearAlgebra/InfiniteInput/output
- + tests/haskell/Numeric/LinearAlgebra/MatrixBroadcastMismatch/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/MatrixBroadcastMismatch/command.txt
- + tests/haskell/Numeric/LinearAlgebra/MatrixBroadcastMismatch/error
- + tests/haskell/Numeric/LinearAlgebra/MatrixBroadcastMismatch/exit
- + tests/haskell/Numeric/LinearAlgebra/MatrixChainMismatch/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/MatrixChainMismatch/command.txt
- + tests/haskell/Numeric/LinearAlgebra/MatrixChainMismatch/error
- + tests/haskell/Numeric/LinearAlgebra/MatrixChainMismatch/exit
- + tests/haskell/Numeric/LinearAlgebra/MatrixProductMismatch/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/MatrixProductMismatch/command.txt
- + tests/haskell/Numeric/LinearAlgebra/MatrixProductMismatch/error
- + tests/haskell/Numeric/LinearAlgebra/MatrixProductMismatch/exit
- + tests/haskell/Numeric/LinearAlgebra/MatrixVectorMismatch/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/MatrixVectorMismatch/command.txt
- + tests/haskell/Numeric/LinearAlgebra/MatrixVectorMismatch/error
- + tests/haskell/Numeric/LinearAlgebra/MatrixVectorMismatch/exit
- + tests/haskell/Numeric/LinearAlgebra/NegativeDimensions/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/NegativeDimensions/command.txt
- + tests/haskell/Numeric/LinearAlgebra/NegativeDimensions/error
- + tests/haskell/Numeric/LinearAlgebra/NegativeDimensions/exit
- + tests/haskell/Numeric/LinearAlgebra/RaggedRows/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/RaggedRows/command.txt
- + tests/haskell/Numeric/LinearAlgebra/RaggedRows/error
- + tests/haskell/Numeric/LinearAlgebra/RaggedRows/exit
- + tests/haskell/Numeric/LinearAlgebra/ShortInput/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/ShortInput/command.txt
- + tests/haskell/Numeric/LinearAlgebra/ShortInput/error
- + tests/haskell/Numeric/LinearAlgebra/ShortInput/exit
- + tests/haskell/Numeric/LinearAlgebra/SingletonRows/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/SingletonRows/command.txt
- + tests/haskell/Numeric/LinearAlgebra/SingletonRows/output
- + tests/haskell/Numeric/LinearAlgebra/UnsupportedElement/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/UnsupportedElement/command.txt
- + tests/haskell/Numeric/LinearAlgebra/UnsupportedElement/exit
- + tests/haskell/Numeric/LinearAlgebra/Vector/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/Vector/command.txt
- + tests/haskell/Numeric/LinearAlgebra/Vector/output
- + tests/haskell/Numeric/LinearAlgebra/VectorBroadcastMismatch/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/VectorBroadcastMismatch/command.txt
- + tests/haskell/Numeric/LinearAlgebra/VectorBroadcastMismatch/error
- + tests/haskell/Numeric/LinearAlgebra/VectorBroadcastMismatch/exit
- + tests/haskell/Numeric/LinearAlgebra/VectorInputLaziness/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/VectorInputLaziness/command.txt
- + tests/haskell/Numeric/LinearAlgebra/VectorInputLaziness/output
- + tests/haskell/Numeric/LinearAlgebra/VectorShortInput/Main.hs
- + tests/haskell/Numeric/LinearAlgebra/VectorShortInput/command.txt
- + tests/haskell/Numeric/LinearAlgebra/VectorShortInput/error
- + tests/haskell/Numeric/LinearAlgebra/VectorShortInput/exit
- + tests/haskell/Numeric/Prob/Main.hs
- + tests/haskell/Numeric/Prob/command.txt
- + tests/haskell/Numeric/Prob/output
- + tests/haskell/Numeric/Signum/Main.hs
- + tests/haskell/Numeric/Signum/command.txt
- + tests/haskell/Numeric/Signum/output
- + tests/haskell/Optimization/CallArity/Main.hs
- + tests/haskell/Optimization/CallArity/command.txt
- + tests/haskell/Optimization/CallArity/output
- + tests/haskell/Optimization/EtaReductionBottom/Main.hs
- + tests/haskell/Optimization/EtaReductionBottom/command.txt
- + tests/haskell/Optimization/EtaReductionBottom/output
- + tests/haskell/Optimization/RhsArity/Main.hs
- + tests/haskell/Optimization/RhsArity/command.txt
- + tests/haskell/Optimization/RhsArity/output
- + tests/haskell/OptionsApplicativeHelp/Main.hs
- + tests/haskell/OptionsApplicativeHelp/command.txt
- + tests/haskell/OptionsApplicativeHelp/output
- + tests/haskell/OptionsApplicativePure/Main.hs
- + tests/haskell/OptionsApplicativePure/command.txt
- + tests/haskell/OptionsApplicativePure/output
- tests/haskell/Ord/1/Main.hs
- tests/haskell/Ord/2/Main.hs
- tests/haskell/Ord/3/Main.hs
- tests/haskell/Ord/3/output
- + tests/haskell/PatternFailures/1/Main.hs
- + tests/haskell/PatternFailures/1/command.txt
- + tests/haskell/PatternFailures/1/error
- + tests/haskell/PatternFailures/1/exit
- + tests/haskell/PatternFailures/2/Main.hs
- + tests/haskell/PatternFailures/2/command.txt
- + tests/haskell/PatternFailures/2/error
- + tests/haskell/PatternFailures/2/exit
- + tests/haskell/PatternFailures/3/Main.hs
- + tests/haskell/PatternFailures/3/command.txt
- + tests/haskell/PatternFailures/3/error
- + tests/haskell/PatternFailures/3/exit
- + tests/haskell/PatternGuards/SiblingScope/Main.hs
- + tests/haskell/PatternGuards/SiblingScope/command.txt
- + tests/haskell/PatternGuards/SiblingScope/output
- + tests/haskell/Patterns/NegativeCharacter/Main.hs
- + tests/haskell/Patterns/NegativeCharacter/command.txt
- + tests/haskell/Patterns/NegativeCharacter/error
- + tests/haskell/Patterns/NegativeCharacter/exit
- + tests/haskell/Patterns/NegativeConstructor/Main.hs
- + tests/haskell/Patterns/NegativeConstructor/command.txt
- + tests/haskell/Patterns/NegativeConstructor/error
- + tests/haskell/Patterns/NegativeConstructor/exit
- + tests/haskell/Patterns/NegativeLiterals/Main.hs
- + tests/haskell/Patterns/NegativeLiterals/command.txt
- + tests/haskell/Patterns/NegativeLiterals/output
- + tests/haskell/Patterns/NegativeVariable/Main.hs
- + tests/haskell/Patterns/NegativeVariable/command.txt
- + tests/haskell/Patterns/NegativeVariable/error
- + tests/haskell/Patterns/NegativeVariable/exit
- + tests/haskell/Probability/BernoulliCDF/Main.hs
- + tests/haskell/Probability/BernoulliCDF/command.txt
- + tests/haskell/Probability/BernoulliCDF/output
- + tests/haskell/Probability/CategoricalEmpty/Main.hs
- + tests/haskell/Probability/CategoricalEmpty/command.txt
- + tests/haskell/Probability/CategoricalEmpty/error
- + tests/haskell/Probability/CategoricalEmpty/exit
- + tests/haskell/Probability/CategoricalSampling/Main.hs
- + tests/haskell/Probability/CategoricalSampling/command.txt
- + tests/haskell/Probability/CategoricalSampling/output
- + tests/haskell/Probability/ComponentStateSequenceProducers/Main.hs
- + tests/haskell/Probability/ComponentStateSequenceProducers/command.txt
- + tests/haskell/Probability/ComponentStateSequenceProducers/output
- + tests/haskell/Probability/DirichletProcessEndpoints/Main.hs
- + tests/haskell/Probability/DirichletProcessEndpoints/command.txt
- + tests/haskell/Probability/DirichletProcessEndpoints/output
- + tests/haskell/Probability/DirichletProcessMCMC/Main.hs
- + tests/haskell/Probability/DirichletProcessMCMC/command.txt
- + tests/haskell/Probability/DirichletProcessMCMC/output
- + tests/haskell/Probability/DirichletProcessMap/Main.hs
- + tests/haskell/Probability/DirichletProcessMap/command.txt
- + tests/haskell/Probability/DirichletProcessMap/output
- + tests/haskell/Probability/DirichletProcessOn/Main.hs
- + tests/haskell/Probability/DirichletProcessOn/command.txt
- + tests/haskell/Probability/DirichletProcessOn/output
- + tests/haskell/Probability/DiscreteBounds/Main.hs
- + tests/haskell/Probability/DiscreteBounds/command.txt
- + tests/haskell/Probability/DiscreteBounds/output
- + tests/haskell/Probability/HeterogeneousMixture/Main.hs
- + tests/haskell/Probability/HeterogeneousMixture/command.txt
- + tests/haskell/Probability/HeterogeneousMixture/output
- + tests/haskell/Probability/HeterogeneousMixtureProperties/Main.hs
- + tests/haskell/Probability/HeterogeneousMixtureProperties/command.txt
- + tests/haskell/Probability/HeterogeneousMixtureProperties/output
- + tests/haskell/Probability/KeyedDistributions/Main.hs
- + tests/haskell/Probability/KeyedDistributions/command.txt
- + tests/haskell/Probability/KeyedDistributions/output
- + tests/haskell/Probability/NegativeBinomial/Main.hs
- + tests/haskell/Probability/NegativeBinomial/command.txt
- + tests/haskell/Probability/NegativeBinomial/output
- + tests/haskell/Probability/PrimitiveVectorBuiltins/Main.hs
- + tests/haskell/Probability/PrimitiveVectorBuiltins/command.txt
- + tests/haskell/Probability/PrimitiveVectorBuiltins/output
- + tests/haskell/Probability/ProbabilityParameterTails/Main.hs
- + tests/haskell/Probability/ProbabilityParameterTails/command.txt
- + tests/haskell/Probability/ProbabilityParameterTails/output
- + tests/haskell/Probability/UniformBoundaries/Main.hs
- + tests/haskell/Probability/UniformBoundaries/command.txt
- + tests/haskell/Probability/UniformBoundaries/output
- + tests/haskell/Read/Containers/Main.hs
- + tests/haskell/Read/Containers/command.txt
- + tests/haskell/Read/Containers/output
- + tests/haskell/RealFrac/Conversions/Main.hs
- + tests/haskell/RealFrac/Conversions/command.txt
- + tests/haskell/RealFrac/Conversions/output
- + tests/haskell/Records/Constructor/Main.hs
- + tests/haskell/Records/Constructor/command.txt
- + tests/haskell/Records/Constructor/output
- + tests/haskell/Records/ConstructorDuplicate/Main.hs
- + tests/haskell/Records/ConstructorDuplicate/command.txt
- + tests/haskell/Records/ConstructorDuplicate/error
- + tests/haskell/Records/ConstructorDuplicate/exit
- + tests/haskell/Records/ConstructorMissing/Main.hs
- + tests/haskell/Records/ConstructorMissing/command.txt
- + tests/haskell/Records/ConstructorMissing/error
- + tests/haskell/Records/ConstructorMissing/exit
- + tests/haskell/Records/ConstructorUnknown/Main.hs
- + tests/haskell/Records/ConstructorUnknown/command.txt
- + tests/haskell/Records/ConstructorUnknown/error
- + tests/haskell/Records/ConstructorUnknown/exit
- + tests/haskell/Records/DataFamily/Main.hs
- + tests/haskell/Records/DataFamily/command.txt
- + tests/haskell/Records/DataFamily/output
- + tests/haskell/Records/DataFamilyMultipleSelectors/Main.hs
- + tests/haskell/Records/DataFamilyMultipleSelectors/command.txt
- + tests/haskell/Records/DataFamilyMultipleSelectors/output
- + tests/haskell/Records/DataFamilyNoFieldSelectorsSelector/Main.hs
- + tests/haskell/Records/DataFamilyNoFieldSelectorsSelector/command.txt
- + tests/haskell/Records/DataFamilyNoFieldSelectorsSelector/error
- + tests/haskell/Records/DataFamilyNoFieldSelectorsSelector/exit
- + tests/haskell/Records/DataFamilyPattern/Main.hs
- + tests/haskell/Records/DataFamilyPattern/command.txt
- + tests/haskell/Records/DataFamilyPattern/output
- + tests/haskell/Records/DataFamilyWildcardPattern/Main.hs
- + tests/haskell/Records/DataFamilyWildcardPattern/command.txt
- + tests/haskell/Records/DataFamilyWildcardPattern/output
- + tests/haskell/Records/Dot/Main.hs
- + tests/haskell/Records/Dot/command.txt
- + tests/haskell/Records/Dot/output
- + tests/haskell/Records/DuplicateLabel/Main.hs
- + tests/haskell/Records/DuplicateLabel/command.txt
- + tests/haskell/Records/DuplicateLabel/error
- + tests/haskell/Records/DuplicateLabel/exit
- + tests/haskell/Records/DuplicateLabelConstructionPattern/Main.hs
- + tests/haskell/Records/DuplicateLabelConstructionPattern/command.txt
- + tests/haskell/Records/DuplicateLabelConstructionPattern/output
- + tests/haskell/Records/DuplicateLabelSelector/Main.hs
- + tests/haskell/Records/DuplicateLabelSelector/command.txt
- + tests/haskell/Records/DuplicateLabelSelector/error
- + tests/haskell/Records/DuplicateLabelSelector/exit
- + tests/haskell/Records/DuplicateLabelUpdate/Main.hs
- + tests/haskell/Records/DuplicateLabelUpdate/command.txt
- + tests/haskell/Records/DuplicateLabelUpdate/output
- + tests/haskell/Records/DuplicateLabelUpdateAmbiguous/Main.hs
- + tests/haskell/Records/DuplicateLabelUpdateAmbiguous/command.txt
- + tests/haskell/Records/DuplicateLabelUpdateAmbiguous/error
- + tests/haskell/Records/DuplicateLabelUpdateAmbiguous/exit
- + tests/haskell/Records/ExistentialSelector/Main.hs
- + tests/haskell/Records/ExistentialSelector/command.txt
- + tests/haskell/Records/ExistentialSelector/output
- + tests/haskell/Records/GADT/Main.hs
- + tests/haskell/Records/GADT/command.txt
- + tests/haskell/Records/GADT/output
- + tests/haskell/Records/GADTNoFieldSelectors/Main.hs
- + tests/haskell/Records/GADTNoFieldSelectors/command.txt
- + tests/haskell/Records/GADTNoFieldSelectors/output
- + tests/haskell/Records/GADTSelector/Main.hs
- + tests/haskell/Records/GADTSelector/command.txt
- + tests/haskell/Records/GADTSelector/output
- + tests/haskell/Records/GADTSelectorUpdate/Main.hs
- + tests/haskell/Records/GADTSelectorUpdate/command.txt
- + tests/haskell/Records/GADTSelectorUpdate/output
- + tests/haskell/Records/GADTWidcardPattern/Main.hs
- + tests/haskell/Records/GADTWidcardPattern/command.txt
- + tests/haskell/Records/GADTWidcardPattern/output
- + tests/haskell/Records/Imported/Main.hs
- + tests/haskell/Records/Imported/RecordSupport.hs
- + tests/haskell/Records/Imported/command.txt
- + tests/haskell/Records/Imported/output
- + tests/haskell/Records/ImportedDuplicateLabelAmbiguous/Main.hs
- + tests/haskell/Records/ImportedDuplicateLabelAmbiguous/RecordSupport.hs
- + tests/haskell/Records/ImportedDuplicateLabelAmbiguous/command.txt
- + tests/haskell/Records/ImportedDuplicateLabelAmbiguous/error
- + tests/haskell/Records/ImportedDuplicateLabelAmbiguous/exit
- + tests/haskell/Records/ImportedDuplicateLabelUpdate/Main.hs
- + tests/haskell/Records/ImportedDuplicateLabelUpdate/RecordSupport.hs
- + tests/haskell/Records/ImportedDuplicateLabelUpdate/command.txt
- + tests/haskell/Records/ImportedDuplicateLabelUpdate/output
- + tests/haskell/Records/ImportedNoFieldSelectors/Main.hs
- + tests/haskell/Records/ImportedNoFieldSelectors/RecordSupport.hs
- + tests/haskell/Records/ImportedNoFieldSelectors/command.txt
- + tests/haskell/Records/ImportedNoFieldSelectors/output
- + tests/haskell/Records/ImportedNoFieldSelectorsSelector/Main.hs
- + tests/haskell/Records/ImportedNoFieldSelectorsSelector/RecordSupport.hs
- + tests/haskell/Records/ImportedNoFieldSelectorsSelector/command.txt
- + tests/haskell/Records/ImportedNoFieldSelectorsSelector/error
- + tests/haskell/Records/ImportedNoFieldSelectorsSelector/exit
- + tests/haskell/Records/ImportedWildcardPattern/Main.hs
- + tests/haskell/Records/ImportedWildcardPattern/RecordSupport.hs
- + tests/haskell/Records/ImportedWildcardPattern/command.txt
- + tests/haskell/Records/ImportedWildcardPattern/output
- + tests/haskell/Records/MixedWildcard/Main.hs
- + tests/haskell/Records/MixedWildcard/command.txt
- + tests/haskell/Records/MixedWildcard/output
- + tests/haskell/Records/MultiConstructorUpdate/Main.hs
- + tests/haskell/Records/MultiConstructorUpdate/command.txt
- + tests/haskell/Records/MultiConstructorUpdate/output
- + tests/haskell/Records/MultiConstructorUpdateInvalid/Main.hs
- + tests/haskell/Records/MultiConstructorUpdateInvalid/command.txt
- + tests/haskell/Records/MultiConstructorUpdateInvalid/error
- + tests/haskell/Records/MultiConstructorUpdateInvalid/exit
- + tests/haskell/Records/MultiConstructorUpdatePartial/Main.hs
- + tests/haskell/Records/MultiConstructorUpdatePartial/command.txt
- + tests/haskell/Records/MultiConstructorUpdatePartial/error
- + tests/haskell/Records/MultiConstructorUpdatePartial/output
- + tests/haskell/Records/NaughtySelector/Main.hs
- + tests/haskell/Records/NaughtySelector/command.txt
- + tests/haskell/Records/NaughtySelector/error
- + tests/haskell/Records/NaughtySelector/exit
- + tests/haskell/Records/Newtype/Main.hs
- + tests/haskell/Records/Newtype/command.txt
- + tests/haskell/Records/Newtype/output
- + tests/haskell/Records/NoFieldSelectors/Main.hs
- + tests/haskell/Records/NoFieldSelectors/command.txt
- + tests/haskell/Records/NoFieldSelectors/output
- + tests/haskell/Records/NoFieldSelectorsSelector/Main.hs
- + tests/haskell/Records/NoFieldSelectorsSelector/command.txt
- + tests/haskell/Records/NoFieldSelectorsSelector/error
- + tests/haskell/Records/NoFieldSelectorsSelector/exit
- + tests/haskell/Records/NoFieldSelectorsUpdate/Main.hs
- + tests/haskell/Records/NoFieldSelectorsUpdate/command.txt
- + tests/haskell/Records/NoFieldSelectorsUpdate/output
- + tests/haskell/Records/NoNamedFieldPuns/Main.hs
- + tests/haskell/Records/NoNamedFieldPuns/command.txt
- + tests/haskell/Records/NoNamedFieldPuns/error
- + tests/haskell/Records/NoNamedFieldPuns/exit
- + tests/haskell/Records/NoNamedFieldPunsPattern/Main.hs
- + tests/haskell/Records/NoNamedFieldPunsPattern/command.txt
- + tests/haskell/Records/NoNamedFieldPunsPattern/error
- + tests/haskell/Records/NoNamedFieldPunsPattern/exit
- + tests/haskell/Records/NoRecordWildCards/Main.hs
- + tests/haskell/Records/NoRecordWildCards/command.txt
- + tests/haskell/Records/NoRecordWildCards/error
- + tests/haskell/Records/NoRecordWildCards/exit
- + tests/haskell/Records/NoRecordWildCardsPattern/Main.hs
- + tests/haskell/Records/NoRecordWildCardsPattern/command.txt
- + tests/haskell/Records/NoRecordWildCardsPattern/error
- + tests/haskell/Records/NoRecordWildCardsPattern/exit
- + tests/haskell/Records/Pattern/Main.hs
- + tests/haskell/Records/Pattern/command.txt
- + tests/haskell/Records/Pattern/output
- + tests/haskell/Records/PatternDuplicate/Main.hs
- + tests/haskell/Records/PatternDuplicate/command.txt
- + tests/haskell/Records/PatternDuplicate/error
- + tests/haskell/Records/PatternDuplicate/exit
- + tests/haskell/Records/PatternUnknown/Main.hs
- + tests/haskell/Records/PatternUnknown/command.txt
- + tests/haskell/Records/PatternUnknown/error
- + tests/haskell/Records/PatternUnknown/exit
- + tests/haskell/Records/SelectorRankNConstrained/Main.hs
- + tests/haskell/Records/SelectorRankNConstrained/command.txt
- + tests/haskell/Records/SelectorRankNConstrained/output
- + tests/haskell/Records/Update/Main.hs
- + tests/haskell/Records/Update/command.txt
- + tests/haskell/Records/Update/output
- + tests/haskell/Records/UpdateDuplicate/Main.hs
- + tests/haskell/Records/UpdateDuplicate/command.txt
- + tests/haskell/Records/UpdateDuplicate/error
- + tests/haskell/Records/UpdateDuplicate/exit
- + tests/haskell/Records/UpdateExistentialConstraint/Main.hs
- + tests/haskell/Records/UpdateExistentialConstraint/command.txt
- + tests/haskell/Records/UpdateExistentialConstraint/output
- + tests/haskell/Records/UpdateExistentialField/Main.hs
- + tests/haskell/Records/UpdateExistentialField/command.txt
- + tests/haskell/Records/UpdateExistentialField/error
- + tests/haskell/Records/UpdateExistentialField/exit
- + tests/haskell/Records/UpdateExistentialPreserve/Main.hs
- + tests/haskell/Records/UpdateExistentialPreserve/command.txt
- + tests/haskell/Records/UpdateExistentialPreserve/output
- + tests/haskell/Records/UpdateGADTConstructorFilter/Main.hs
- + tests/haskell/Records/UpdateGADTConstructorFilter/command.txt
- + tests/haskell/Records/UpdateGADTConstructorFilter/output
- + tests/haskell/Records/UpdateGADTRefinedField/Main.hs
- + tests/haskell/Records/UpdateGADTRefinedField/command.txt
- + tests/haskell/Records/UpdateGADTRefinedField/output
- + tests/haskell/Records/UpdateGADTTypeChanging/Main.hs
- + tests/haskell/Records/UpdateGADTTypeChanging/command.txt
- + tests/haskell/Records/UpdateGADTTypeChanging/output
- + tests/haskell/Records/UpdateGADTTypeFamilyResult/Main.hs
- + tests/haskell/Records/UpdateGADTTypeFamilyResult/command.txt
- + tests/haskell/Records/UpdateGADTTypeFamilyResult/output
- + tests/haskell/Records/UpdateHiddenField/ForeignRecord.hs
- + tests/haskell/Records/UpdateHiddenField/LocalRecord.hs
- + tests/haskell/Records/UpdateHiddenField/Main.hs
- + tests/haskell/Records/UpdateHiddenField/command.txt
- + tests/haskell/Records/UpdateHiddenField/error
- + tests/haskell/Records/UpdateHiddenField/exit
- + tests/haskell/Records/UpdateRankNField/Main.hs
- + tests/haskell/Records/UpdateRankNField/command.txt
- + tests/haskell/Records/UpdateRankNField/output
- + tests/haskell/Records/UpdateTypeChanging/Main.hs
- + tests/haskell/Records/UpdateTypeChanging/command.txt
- + tests/haskell/Records/UpdateTypeChanging/output
- + tests/haskell/Records/UpdateTypeChangingMultiParam/Main.hs
- + tests/haskell/Records/UpdateTypeChangingMultiParam/command.txt
- + tests/haskell/Records/UpdateTypeChangingMultiParam/output
- + tests/haskell/Records/UpdateUnknown/Main.hs
- + tests/haskell/Records/UpdateUnknown/command.txt
- + tests/haskell/Records/UpdateUnknown/error
- + tests/haskell/Records/UpdateUnknown/exit
- + tests/haskell/Records/WildcardConstruction/Main.hs
- + tests/haskell/Records/WildcardConstruction/command.txt
- + tests/haskell/Records/WildcardConstruction/exit
- + tests/haskell/Records/WildcardConstruction/output
- + tests/haskell/Records/WildcardPattern/Main.hs
- + tests/haskell/Records/WildcardPattern/command.txt
- + tests/haskell/Records/WildcardPattern/output
- + tests/haskell/Records/WildcardUpdateInfer/Main.hs
- + tests/haskell/Records/WildcardUpdateInfer/command.txt
- + tests/haskell/Records/WildcardUpdateInfer/error
- + tests/haskell/Records/WildcardUpdateInfer/exit
- + tests/haskell/Records/WildcardUpdateMixed/Main.hs
- + tests/haskell/Records/WildcardUpdateMixed/command.txt
- + tests/haskell/Records/WildcardUpdateMixed/error
- + tests/haskell/Records/WildcardUpdateMixed/exit
- + tests/haskell/RecursiveDo/Basic/Main.hs
- + tests/haskell/RecursiveDo/Basic/command.txt
- + tests/haskell/RecursiveDo/Basic/output
- + tests/haskell/RecursiveDo/DifferentTypes/Main.hs
- + tests/haskell/RecursiveDo/DifferentTypes/command.txt
- + tests/haskell/RecursiveDo/DifferentTypes/output
- + tests/haskell/RecursiveDo/ForwardRef/Main.hs
- + tests/haskell/RecursiveDo/ForwardRef/command.txt
- + tests/haskell/RecursiveDo/ForwardRef/output
- + tests/haskell/RecursiveDo/LocalMfixIgnored/Main.hs
- + tests/haskell/RecursiveDo/LocalMfixIgnored/command.txt
- + tests/haskell/RecursiveDo/LocalMfixIgnored/output
- + tests/haskell/RecursiveDo/MDoBasic/Main.hs
- + tests/haskell/RecursiveDo/MDoBasic/command.txt
- + tests/haskell/RecursiveDo/MDoBasic/output
- + tests/haskell/RecursiveDo/MDoNoRec/Main.hs
- + tests/haskell/RecursiveDo/MDoNoRec/command.txt
- + tests/haskell/RecursiveDo/MDoNoRec/output
- + tests/haskell/RecursiveDo/NestedRec/Main.hs
- + tests/haskell/RecursiveDo/NestedRec/command.txt
- + tests/haskell/RecursiveDo/NestedRec/output
- + tests/haskell/RecursiveDo/NoExtensionMDo/Main.hs
- + tests/haskell/RecursiveDo/NoExtensionMDo/command.txt
- + tests/haskell/RecursiveDo/NoExtensionMDo/error
- + tests/haskell/RecursiveDo/NoExtensionMDo/exit
- + tests/haskell/RecursiveDo/NoExtensionRec/Main.hs
- + tests/haskell/RecursiveDo/NoExtensionRec/command.txt
- + tests/haskell/RecursiveDo/NoExtensionRec/error
- + tests/haskell/RecursiveDo/NoExtensionRec/exit
- + tests/haskell/RecursiveDo/QualifiedMfixNotInScope/Main.hs
- + tests/haskell/RecursiveDo/QualifiedMfixNotInScope/command.txt
- + tests/haskell/RecursiveDo/QualifiedMfixNotInScope/error
- + tests/haskell/RecursiveDo/QualifiedMfixNotInScope/exit
- + tests/haskell/RecursiveDo/SourceMfixNotInScope/Main.hs
- + tests/haskell/RecursiveDo/SourceMfixNotInScope/command.txt
- + tests/haskell/RecursiveDo/SourceMfixNotInScope/error
- + tests/haskell/RecursiveDo/SourceMfixNotInScope/exit
- + tests/haskell/RecursiveDo/UsedAfter/Main.hs
- + tests/haskell/RecursiveDo/UsedAfter/command.txt
- + tests/haskell/RecursiveDo/UsedAfter/output
- + tests/haskell/Roles/SourceAnnotation/Main.hs
- + tests/haskell/Roles/SourceAnnotation/command.txt
- + tests/haskell/Roles/SourceAnnotation/error
- + tests/haskell/Roles/SourceAnnotation/exit
- + tests/haskell/SMCInterface/Main.hs
- + tests/haskell/SMCInterface/command.txt
- + tests/haskell/SMCInterface/output
- + tests/haskell/SModel/ASRVDiscretization/Main.hs
- + tests/haskell/SModel/ASRVDiscretization/command.txt
- + tests/haskell/SModel/ASRVDiscretization/output
- + tests/haskell/SModel/CenteredFitnesses/Main.hs
- + tests/haskell/SModel/CenteredFitnesses/command.txt
- + tests/haskell/SModel/CenteredFitnesses/output
- + tests/haskell/SModel/LikelihoodScaling/Main.hs
- + tests/haskell/SModel/LikelihoodScaling/command.txt
- + tests/haskell/SModel/LikelihoodScaling/output
- + tests/haskell/SModel/MultiNucleotideMutationRates/Main.hs
- + tests/haskell/SModel/MultiNucleotideMutationRates/command.txt
- + tests/haskell/SModel/MultiNucleotideMutationRates/output
- + tests/haskell/SModel/OmegaBranchModel/Main.hs
- + tests/haskell/SModel/OmegaBranchModel/command.txt
- + tests/haskell/SModel/OmegaBranchModel/output
- + tests/haskell/SModel/Properties/Main.hs
- + tests/haskell/SModel/Properties/command.txt
- + tests/haskell/SModel/Properties/output
- + tests/haskell/StrictPatterns/1/Main.hs
- + tests/haskell/StrictPatterns/1/command.txt
- + tests/haskell/StrictPatterns/1/output
- + tests/haskell/StrictPatterns/2/Main.hs
- + tests/haskell/StrictPatterns/2/command.txt
- + tests/haskell/StrictPatterns/2/output
- + tests/haskell/StrictPatterns/3/Main.hs
- + tests/haskell/StrictPatterns/3/command.txt
- + tests/haskell/StrictPatterns/3/error
- + tests/haskell/StrictPatterns/3/exit
- + tests/haskell/StrictPatterns/4/Main.hs
- + tests/haskell/StrictPatterns/4/command.txt
- + tests/haskell/StrictPatterns/4/output
- + tests/haskell/StrictPatterns/5/Main.hs
- + tests/haskell/StrictPatterns/5/command.txt
- + tests/haskell/StrictPatterns/5/error
- + tests/haskell/StrictPatterns/5/exit
- + tests/haskell/StrictPatterns/6/Main.hs
- + tests/haskell/StrictPatterns/6/command.txt
- + tests/haskell/StrictPatterns/6/output
- + tests/haskell/String/UnicodeEscapes/Main.hs
- + tests/haskell/String/UnicodeEscapes/command.txt
- + tests/haskell/String/UnicodeEscapes/output
- + tests/haskell/SystemEnvironment/Main.hs
- + tests/haskell/SystemEnvironment/command.txt
- + tests/haskell/SystemEnvironment/output
- + tests/haskell/SystemExit/Main.hs
- + tests/haskell/SystemExit/command.txt
- + tests/haskell/SystemExit/exit
- + tests/haskell/SystemExit/output
- + tests/haskell/Tree/NewickErrors/FileName/Main.hs
- + tests/haskell/Tree/NewickErrors/FileName/bad.tree
- + tests/haskell/Tree/NewickErrors/FileName/command.txt
- + tests/haskell/Tree/NewickErrors/FileName/error
- + tests/haskell/Tree/NewickErrors/FileName/exit
- + tests/haskell/Tree/NewickErrors/IncompleteBranchLength/Main.hs
- + tests/haskell/Tree/NewickErrors/IncompleteBranchLength/command.txt
- + tests/haskell/Tree/NewickErrors/IncompleteBranchLength/error
- + tests/haskell/Tree/NewickErrors/IncompleteBranchLength/exit
- + tests/haskell/Tree/NewickErrors/MissingDescendantClose/Main.hs
- + tests/haskell/Tree/NewickErrors/MissingDescendantClose/command.txt
- + tests/haskell/Tree/NewickErrors/MissingDescendantClose/error
- + tests/haskell/Tree/NewickErrors/MissingDescendantClose/exit
- + tests/haskell/Tree/NewickErrors/TrailingInput/Main.hs
- + tests/haskell/Tree/NewickErrors/TrailingInput/command.txt
- + tests/haskell/Tree/NewickErrors/TrailingInput/error
- + tests/haskell/Tree/NewickErrors/TrailingInput/exit
- + tests/haskell/Tree/NewickErrors/UnterminatedComment/Main.hs
- + tests/haskell/Tree/NewickErrors/UnterminatedComment/command.txt
- + tests/haskell/Tree/NewickErrors/UnterminatedComment/error
- + tests/haskell/Tree/NewickErrors/UnterminatedComment/exit
- + tests/haskell/Tree/NewickLabels/Main.hs
- + tests/haskell/Tree/NewickLabels/command.txt
- + tests/haskell/Tree/NewickLabels/output
- tests/haskell/Types/1/Main.hs
- tests/haskell/Types/10/command.txt
- tests/haskell/Types/11/command.txt
- tests/haskell/Types/11/error
- tests/haskell/Types/2/Main.hs
- tests/haskell/Types/2/error
- tests/haskell/Types/3/Main.hs
- tests/haskell/Types/4/command.txt
- tests/haskell/Types/4/error
- tests/haskell/Types/5/command.txt
- tests/haskell/Types/6/command.txt
- tests/haskell/Types/6/error
- tests/haskell/Types/7/Main.hs
- tests/haskell/Types/7/command.txt
- tests/haskell/Types/8/command.txt
- tests/haskell/Types/8/error
- tests/haskell/Types/9/command.txt
- tests/haskell/Types/9/error
- + tests/haskell/Types/AssociatedDataFamilies/1/Main.hs
- + tests/haskell/Types/AssociatedDataFamilies/1/command.txt
- + tests/haskell/Types/AssociatedDataFamilies/2/Main.hs
- + tests/haskell/Types/AssociatedDataFamilies/2/command.txt
- + tests/haskell/Types/AssociatedDataFamilies/2/output
- + tests/haskell/Types/AssociatedDataFamilies/3/Main.hs
- + tests/haskell/Types/AssociatedDataFamilies/3/command.txt
- + tests/haskell/Types/AssociatedDataFamilies/3/error
- + tests/haskell/Types/AssociatedDataFamilies/3/exit
- + tests/haskell/Types/AssociatedDataFamilies/4/Main.hs
- + tests/haskell/Types/AssociatedDataFamilies/4/command.txt
- + tests/haskell/Types/AssociatedDataFamilies/4/error
- + tests/haskell/Types/AssociatedDataFamilies/4/exit
- + tests/haskell/Types/AssociatedFamiliesImport/DotDot/AssocImportSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/DotDot/Main.hs
- + tests/haskell/Types/AssociatedFamiliesImport/DotDot/command.txt
- + tests/haskell/Types/AssociatedFamiliesImport/DotDot/output
- + tests/haskell/Types/AssociatedFamiliesImport/Explicit/AssocExplicitSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Explicit/Main.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Explicit/command.txt
- + tests/haskell/Types/AssociatedFamiliesImport/Explicit/output
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/AssocHideDotDotSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/AssocHideExplicitSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/AssocHideOtherSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/Main.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/command.txt
- + tests/haskell/Types/AssociatedFamiliesImport/Hiding/output
- + tests/haskell/Types/AssociatedFamiliesImport/ReExport/AssocBaseSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/ReExport/AssocReExportSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/ReExport/Main.hs
- + tests/haskell/Types/AssociatedFamiliesImport/ReExport/command.txt
- + tests/haskell/Types/AssociatedFamiliesImport/ReExport/output
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/AssocShadowClassSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/AssocShadowReExportSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/AssocShadowTypeSupport.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/Main.hs
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/command.txt
- + tests/haskell/Types/AssociatedFamiliesImport/Shadowed/output
- + tests/haskell/Types/DataContexts/1/Main.hs
- + tests/haskell/Types/DataContexts/1/command.txt
- + tests/haskell/Types/DataContexts/1/error
- + tests/haskell/Types/DataContexts/1/exit
- + tests/haskell/Types/DataFamilies/1/Main.hs
- + tests/haskell/Types/DataFamilies/1/command.txt
- + tests/haskell/Types/DataFamilies/10/Main.hs
- + tests/haskell/Types/DataFamilies/10/command.txt
- + tests/haskell/Types/DataFamilies/10/output
- + tests/haskell/Types/DataFamilies/11/Main.hs
- + tests/haskell/Types/DataFamilies/11/command.txt
- + tests/haskell/Types/DataFamilies/11/output
- + tests/haskell/Types/DataFamilies/12/DataFamilySupport.hs
- + tests/haskell/Types/DataFamilies/12/Main.hs
- + tests/haskell/Types/DataFamilies/12/command.txt
- + tests/haskell/Types/DataFamilies/12/output
- + tests/haskell/Types/DataFamilies/13/command.txt
- + tests/haskell/Types/DataFamilies/13/output
- + tests/haskell/Types/DataFamilies/13/src/Local/DataFamilySupport.hs
- + tests/haskell/Types/DataFamilies/13/src/Local/Main.hs
- + tests/haskell/Types/DataFamilies/14/Main.hs
- + tests/haskell/Types/DataFamilies/14/command.txt
- + tests/haskell/Types/DataFamilies/14/output
- + tests/haskell/Types/DataFamilies/15/Main.hs
- + tests/haskell/Types/DataFamilies/15/command.txt
- + tests/haskell/Types/DataFamilies/15/error
- + tests/haskell/Types/DataFamilies/15/exit
- + tests/haskell/Types/DataFamilies/16/Main.hs
- + tests/haskell/Types/DataFamilies/16/command.txt
- + tests/haskell/Types/DataFamilies/17/Main.hs
- + tests/haskell/Types/DataFamilies/17/command.txt
- + tests/haskell/Types/DataFamilies/17/error
- + tests/haskell/Types/DataFamilies/17/exit
- + tests/haskell/Types/DataFamilies/18/DataFamilySupport.hs
- + tests/haskell/Types/DataFamilies/18/Main.hs
- + tests/haskell/Types/DataFamilies/18/command.txt
- + tests/haskell/Types/DataFamilies/18/output
- + tests/haskell/Types/DataFamilies/19/Main.hs
- + tests/haskell/Types/DataFamilies/19/command.txt
- + tests/haskell/Types/DataFamilies/19/output
- + tests/haskell/Types/DataFamilies/2/Main.hs
- + tests/haskell/Types/DataFamilies/2/command.txt
- + tests/haskell/Types/DataFamilies/3/Main.hs
- + tests/haskell/Types/DataFamilies/3/command.txt
- + tests/haskell/Types/DataFamilies/3/error
- + tests/haskell/Types/DataFamilies/3/exit
- + tests/haskell/Types/DataFamilies/4/Main.hs
- + tests/haskell/Types/DataFamilies/4/command.txt
- + tests/haskell/Types/DataFamilies/5/Main.hs
- + tests/haskell/Types/DataFamilies/5/command.txt
- + tests/haskell/Types/DataFamilies/5/error
- + tests/haskell/Types/DataFamilies/5/exit
- + tests/haskell/Types/DataFamilies/6/Main.hs
- + tests/haskell/Types/DataFamilies/6/command.txt
- + tests/haskell/Types/DataFamilies/7/Main.hs
- + tests/haskell/Types/DataFamilies/7/command.txt
- + tests/haskell/Types/DataFamilies/7/error
- + tests/haskell/Types/DataFamilies/7/exit
- + tests/haskell/Types/DataFamilies/8/Main.hs
- + tests/haskell/Types/DataFamilies/8/command.txt
- + tests/haskell/Types/DataFamilies/8/output
- + tests/haskell/Types/DataFamilies/9/Main.hs
- + tests/haskell/Types/DataFamilies/9/command.txt
- + tests/haskell/Types/DataFamilies/9/error
- + tests/haskell/Types/DataFamilies/9/exit
- + tests/haskell/Types/FunctionalDependencies/Basic/Main.hs
- + tests/haskell/Types/FunctionalDependencies/Basic/command.txt
- + tests/haskell/Types/FunctionalDependencies/ClassMethodAmbiguity/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ClassMethodAmbiguity/command.txt
- + tests/haskell/Types/FunctionalDependencies/Consistency/Main.hs
- + tests/haskell/Types/FunctionalDependencies/Consistency/command.txt
- + tests/haskell/Types/FunctionalDependencies/ConsistencyFailure/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ConsistencyFailure/command.txt
- + tests/haskell/Types/FunctionalDependencies/ConsistencyFailure/error
- + tests/haskell/Types/FunctionalDependencies/ConsistencyFailure/exit
- + tests/haskell/Types/FunctionalDependencies/ConsistencyImported/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ConsistencyImported/Support.hs
- + tests/haskell/Types/FunctionalDependencies/ConsistencyImported/command.txt
- + tests/haskell/Types/FunctionalDependencies/ConsistencyImported/error
- + tests/haskell/Types/FunctionalDependencies/ConsistencyImported/exit
- + tests/haskell/Types/FunctionalDependencies/ConsistencyNonOverlappingHeads/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ConsistencyNonOverlappingHeads/command.txt
- + tests/haskell/Types/FunctionalDependencies/ConsistencyNonOverlappingHeads/error
- + tests/haskell/Types/FunctionalDependencies/ConsistencyNonOverlappingHeads/exit
- + tests/haskell/Types/FunctionalDependencies/Coverage/Main.hs
- + tests/haskell/Types/FunctionalDependencies/Coverage/command.txt
- + tests/haskell/Types/FunctionalDependencies/CoverageFailure/Main.hs
- + tests/haskell/Types/FunctionalDependencies/CoverageFailure/command.txt
- + tests/haskell/Types/FunctionalDependencies/CoverageFailure/error
- + tests/haskell/Types/FunctionalDependencies/CoverageFailure/exit
- + tests/haskell/Types/FunctionalDependencies/EqualityCoverage/Main.hs
- + tests/haskell/Types/FunctionalDependencies/EqualityCoverage/command.txt
- + tests/haskell/Types/FunctionalDependencies/ExtensionDisabled/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ExtensionDisabled/command.txt
- + tests/haskell/Types/FunctionalDependencies/ExtensionDisabled/error
- + tests/haskell/Types/FunctionalDependencies/ExtensionDisabled/exit
- + tests/haskell/Types/FunctionalDependencies/Generalization/Main.hs
- + tests/haskell/Types/FunctionalDependencies/Generalization/command.txt
- + tests/haskell/Types/FunctionalDependencies/Generalization/error
- + tests/haskell/Types/FunctionalDependencies/ImpliesMultiParam/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ImpliesMultiParam/command.txt
- + tests/haskell/Types/FunctionalDependencies/ImportedImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/ImportedImprovement/Support.hs
- + tests/haskell/Types/FunctionalDependencies/ImportedImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/InsolubleImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/InsolubleImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/InsolubleImprovement/error
- + tests/haskell/Types/FunctionalDependencies/InsolubleImprovement/exit
- + tests/haskell/Types/FunctionalDependencies/InstanceBeforeImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/InstanceBeforeImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/InstanceImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/InstanceImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/KindClosure/Main.hs
- + tests/haskell/Types/FunctionalDependencies/KindClosure/command.txt
- + tests/haskell/Types/FunctionalDependencies/KindClosure/error
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverage/Main.hs
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverage/command.txt
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverageDisabled/Main.hs
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverageDisabled/command.txt
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverageDisabled/error
- + tests/haskell/Types/FunctionalDependencies/LiberalCoverageDisabled/exit
- + tests/haskell/Types/FunctionalDependencies/LocalBeforeTopImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/LocalBeforeTopImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/LocalImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/LocalImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/MultiResultImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/MultiResultImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/MultipleDependencies/Main.hs
- + tests/haskell/Types/FunctionalDependencies/MultipleDependencies/command.txt
- + tests/haskell/Types/FunctionalDependencies/MultipleDependencies/error
- + tests/haskell/Types/FunctionalDependencies/MultipleDependencies/exit
- + tests/haskell/Types/FunctionalDependencies/NestedGeneralization/Main.hs
- + tests/haskell/Types/FunctionalDependencies/NestedGeneralization/command.txt
- + tests/haskell/Types/FunctionalDependencies/NestedGeneralization/error
- + tests/haskell/Types/FunctionalDependencies/NoDependencyAmbiguity/Main.hs
- + tests/haskell/Types/FunctionalDependencies/NoDependencyAmbiguity/command.txt
- + tests/haskell/Types/FunctionalDependencies/PartialInstanceImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/PartialInstanceImprovement/command.txt
- + tests/haskell/Types/FunctionalDependencies/RedundantForms/Main.hs
- + tests/haskell/Types/FunctionalDependencies/RedundantForms/command.txt
- + tests/haskell/Types/FunctionalDependencies/SuperclassCoverage/Main.hs
- + tests/haskell/Types/FunctionalDependencies/SuperclassCoverage/command.txt
- + tests/haskell/Types/FunctionalDependencies/TransitiveGeneralization/Main.hs
- + tests/haskell/Types/FunctionalDependencies/TransitiveGeneralization/command.txt
- + tests/haskell/Types/FunctionalDependencies/TransitiveGeneralization/error
- + tests/haskell/Types/FunctionalDependencies/UnknownParameter/Main.hs
- + tests/haskell/Types/FunctionalDependencies/UnknownParameter/command.txt
- + tests/haskell/Types/FunctionalDependencies/UnknownParameter/error
- + tests/haskell/Types/FunctionalDependencies/UnknownParameter/exit
- + tests/haskell/Types/FunctionalDependencies/WantedImprovement/Main.hs
- + tests/haskell/Types/FunctionalDependencies/WantedImprovement/command.txt
- tests/haskell/Types/GADT/1/command.txt
- tests/haskell/Types/GADT/2/Main.hs
- tests/haskell/Types/GADT/3/Main.hs
- tests/haskell/Types/GADT/3/command.txt
- tests/haskell/Types/GADT/4/command.txt
- tests/haskell/Types/GADT/4/error
- + tests/haskell/Types/NestedForallFunction/Main.hs
- + tests/haskell/Types/NestedForallFunction/command.txt
- + tests/haskell/Types/NestedForallFunction/output
- + tests/haskell/Types/NestedForallLambda/Main.hs
- + tests/haskell/Types/NestedForallLambda/command.txt
- + tests/haskell/Types/NestedForallLambda/output
- + tests/haskell/Types/StarIsType/Default/Main.hs
- + tests/haskell/Types/StarIsType/Default/command.txt
- + tests/haskell/Types/StarIsType/Disabled/Main.hs
- + tests/haskell/Types/StarIsType/Disabled/command.txt
- + tests/haskell/Types/StrictFields/1/Main.hs
- + tests/haskell/Types/StrictFields/1/command.txt
- + tests/haskell/Types/StrictFields/1/error
- + tests/haskell/Types/StrictFields/1/exit
- + tests/haskell/Types/StrictFields/2/Main.hs
- + tests/haskell/Types/StrictFields/2/command.txt
- + tests/haskell/Types/StrictFields/3/Main.hs
- + tests/haskell/Types/StrictFields/3/command.txt
- + tests/haskell/Types/StrictFields/3/error
- + tests/haskell/Types/StrictFields/3/exit
- + tests/haskell/Types/StrictFields/4/Main.hs
- + tests/haskell/Types/StrictFields/4/command.txt
- + tests/haskell/Types/StrictFields/5/Main.hs
- + tests/haskell/Types/StrictFields/5/command.txt
- + tests/haskell/Types/StrictFields/5/error
- + tests/haskell/Types/StrictFields/5/exit
- + tests/haskell/Types/StrictFields/6/Main.hs
- + tests/haskell/Types/StrictFields/6/command.txt
- + tests/haskell/Types/Substitution/Simultaneous/Main.hs
- + tests/haskell/Types/Substitution/Simultaneous/command.txt
- tests/haskell/Types/TypeFamilies/1/command.txt
- + tests/haskell/Types/TypeFamilies/10/A.hs
- + tests/haskell/Types/TypeFamilies/10/B.hs
- + tests/haskell/Types/TypeFamilies/10/Base.hs
- + tests/haskell/Types/TypeFamilies/10/Main.hs
- + tests/haskell/Types/TypeFamilies/10/command.txt
- + tests/haskell/Types/TypeFamilies/10/exit
- + tests/haskell/Types/TypeFamilies/11/ClosedSupport.hs
- + tests/haskell/Types/TypeFamilies/11/Main.hs
- + tests/haskell/Types/TypeFamilies/11/command.txt
- + tests/haskell/Types/TypeFamilies/12/Main.hs
- + tests/haskell/Types/TypeFamilies/12/command.txt
- + tests/haskell/Types/TypeFamilies/13/ClosedSupport.hs
- + tests/haskell/Types/TypeFamilies/13/Main.hs
- + tests/haskell/Types/TypeFamilies/13/command.txt
- + tests/haskell/Types/TypeFamilies/13/exit
- + tests/haskell/Types/TypeFamilies/14/Main.hs
- + tests/haskell/Types/TypeFamilies/14/OpenSupport.hs
- + tests/haskell/Types/TypeFamilies/14/command.txt
- + tests/haskell/Types/TypeFamilies/14/exit
- + tests/haskell/Types/TypeFamilies/15/Main.hs
- + tests/haskell/Types/TypeFamilies/15/command.txt
- + tests/haskell/Types/TypeFamilies/16/Base.hs
- + tests/haskell/Types/TypeFamilies/16/General.hs
- + tests/haskell/Types/TypeFamilies/16/Main.hs
- + tests/haskell/Types/TypeFamilies/16/Specific.hs
- + tests/haskell/Types/TypeFamilies/16/command.txt
- tests/haskell/Types/TypeFamilies/2/command.txt
- tests/haskell/Types/TypeFamilies/3/command.txt
- tests/haskell/Types/TypeFamilies/4/command.txt
- tests/haskell/Types/TypeFamilies/5/Main.hs
- tests/haskell/Types/TypeFamilies/5/command.txt
- tests/haskell/Types/TypeFamilies/5/error
- + tests/haskell/Types/TypeFamilies/6/Main.hs
- + tests/haskell/Types/TypeFamilies/6/command.txt
- + tests/haskell/Types/TypeFamilies/7/Main.hs
- + tests/haskell/Types/TypeFamilies/7/command.txt
- + tests/haskell/Types/TypeFamilies/7/exit
- + tests/haskell/Types/TypeFamilies/8/Main.hs
- + tests/haskell/Types/TypeFamilies/8/command.txt
- + tests/haskell/Types/TypeFamilies/9/Main.hs
- + tests/haskell/Types/TypeFamilies/9/command.txt
- + tests/haskell/Types/TypeFamilies/9/exit
- tests/haskell/math/RealFloat/Main.hs
- tests/haskell/parse/1/Main.hs
- + tests/infer/FixedAlignmentRuntime/README.md
- + tests/infer/FixedAlignmentRuntime/Run/command.txt
- + tests/infer/FixedAlignmentRuntime/Run/error
- + tests/infer/FixedAlignmentRuntime/Run/exit
- + tests/infer/FixedAlignmentRuntime/Run/not-a-directory
- + tests/infer/FixedAlignmentRuntime/Test/command.txt
- tests/mcmc/48-sequences/1/command.txt
- + tests/mcmc/cat-states/5d-muscle.fasta
- + tests/mcmc/cat-states/command.txt
- tests/mcmc/fixed-scale/command.txt
- tests/mcmc/fixed-topology/rooted/command.txt
- tests/mcmc/fixed-topology/unrooted/command.txt
- tests/mcmc/no-imodel/command.txt
- tests/mcmc/one-sequence/1/command.txt
- tests/mcmc/two-partitions/command.txt
- tests/mcmc/two-sequences/1/command.txt
- tests/mcmc/with-imodel/command.txt
- tests/parse/10/command.txt
- tests/parse/11/command.txt
- tests/parse/12/command.txt
- tests/parse/13/command.txt
- tests/parse/14/command.txt
- tests/parse/17/command.txt
- tests/parse/18/command.txt
- tests/parse/19/command.txt
- tests/parse/23/command.txt
- tests/parse/24/command.txt
- tests/parse/25/command.txt
- tests/parse/26/command.txt
- + tests/parse/27/command.txt
- tests/parse/3/command.txt
- tests/parse/4/command.txt
- tests/parse/5/command.txt
- tests/parse/6/command.txt
- tests/parse/7/command.txt
- tests/parse/8/command.txt
- tests/parse/9/command.txt
- tests/parse/M3/1/command.txt
- + tests/parse/M3/1/output
- tests/parse/M3/2/command.txt
- + tests/parse/M3/README.md
- + tests/parse/branch-categories/fixed-topology/command.txt
- + tests/parse/branch-categories/fixed-tree/command.txt
- + tests/parse/branch-categories/foreground.tree
- + tests/parse/branch-categories/gap.tree
- + tests/parse/branch-categories/general-empty/command.txt
- + tests/parse/branch-categories/general-empty/error
- + tests/parse/branch-categories/general-empty/exit
- + tests/parse/branch-categories/general-gap/README.md
- + tests/parse/branch-categories/general-gap/command.txt
- + tests/parse/branch-categories/general-gap/error
- + tests/parse/branch-categories/general-gap/exit
- + tests/parse/branch-categories/general-missing-omega/command.txt
- + tests/parse/branch-categories/general-missing-omega/error
- + tests/parse/branch-categories/general-missing-omega/exit
- + tests/parse/branch-categories/general-three/command.txt
- + tests/parse/branch-categories/hypotheses.tree
- + tests/parse/branch-categories/hypothesis-model/README.md
- + tests/parse/branch-categories/hypothesis-model/command.txt
- + tests/parse/branch-categories/three.tree
- + tests/parse/branch-categories/unfixed/command.txt
- + tests/parse/branch-categories/unfixed/error
- + tests/parse/branch-categories/unfixed/exit
- tests/parse/constraints/1/command.txt
- + tests/parse/delta/command.txt
- + tests/parse/dirichlet-process-map/command.txt
- + tests/parse/dirichlet-process-mixture/command.txt
- + tests/parse/dirichlet-process-on/command.txt
- + tests/parse/dirichlet-process/command.txt
- tests/parse/error/1/command.txt
- tests/parse/error/1/error
- tests/parse/error/2/command.txt
- tests/parse/error/3/command.txt
- tests/parse/error/3/error
- tests/parse/error/4/command.txt
- tests/parse/error/4/error
- + tests/parse/error/config-no-data/command.txt
- + tests/parse/error/config-no-data/config
- + tests/parse/error/config-no-data/error
- + tests/parse/error/config-no-data/exit
- + tests/parse/fixity/PreviousDeclarations/command.txt
- + tests/parse/fixity/QualifiedNamed/command.txt
- + tests/parse/fixity/UnparseColon/command.txt
- + tests/parse/fixity/UnparseColon/output
- + tests/parse/fixity/UnparseLambda/command.txt
- + tests/parse/fixity/UnparseLambda/output
- + tests/parse/fixity/UnparseNamed/command.txt
- + tests/parse/fixity/UnparseNamed/error
- + tests/parse/fixity/UnparseNamed/exit
- + tests/parse/fixity/UnparseNamedOperator/command.txt
- + tests/parse/fixity/UnparseNamedOperator/error
- + tests/parse/fixity/UnparseNamedOperator/exit
- + tests/parse/fixity/UnparseNegation/command.txt
- + tests/parse/fixity/UnparseNegation/error
- + tests/parse/fixity/UnparseNegation/exit
- + tests/parse/fixity/UnparseNested/command.txt
- + tests/parse/fixity/UnparseNested/output
- + tests/parse/fixity/UnparseSymbolicPrefix/command.txt
- + tests/parse/fixity/UnparseSymbolicPrefix/error
- + tests/parse/fixity/UnparseSymbolicPrefix/exit
- tests/parse/functions/1/command.txt
- + tests/parse/heterogeneous-mixture/command.txt
- tests/parse/int-to-double/1/command.txt
- tests/parse/int-to-double/2/command.txt
- tests/parse/int-to-double/3/command.txt
- tests/parse/let/1/command.txt
- tests/parse/partitions/1/command.txt
- tests/parse/partitions/2/command.txt
- tests/parse/partitions/3/command.txt
- tests/parse/partitions/3/config
- tests/parse/partitions/4/command.txt
- tests/parse/partitions/link/2/command.txt
- tests/parse/partitions/link/2/error
- tests/parse/partitions/link/3/command.txt
- tests/parse/partitions/link/3/error
- tests/parse/partitions/link/4/command.txt
- + tests/parse/recursion/Effectful/command.txt
- + tests/parse/recursion/Effectful/exit
- + tests/parse/recursion/EffectfulFunction/command.txt
- + tests/parse/recursion/EffectfulFunction/exit
- + tests/parse/recursion/Pure/command.txt
- + tests/parse/recursion/TopPure/command.txt
- tests/parse/x3/1/command.txt
- tests/parse/x3/3/command.txt
- tests/parse/x3/4/command.txt
- tests/parse/x3/5/command.txt
- + tests/parse/x3/6/command.txt
- tests/print/1/command.txt
- tests/print/2/command.txt
- + tests/print/Fixity/Association/command.txt
- + tests/print/Fixity/Association/output
- + tests/print/Fixity/Conflict/command.txt
- + tests/print/Fixity/Conflict/error
- + tests/print/Fixity/Conflict/exit
- + tests/print/Fixity/Negation/command.txt
- + tests/print/Fixity/Negation/output
- + tests/print/Fixity/UnknownOperator/command.txt
- + tests/print/Fixity/UnknownOperator/error
- + tests/print/Fixity/UnknownOperator/exit
- + tests/print/FixityNamed/LocalShadow/command.txt
- + tests/print/FixityNamed/LocalShadow/output
- + tests/print/FixityNamed/Negation/command.txt
- + tests/print/FixityNamed/Negation/output
- + tests/print/FixityNamed/Rule/command.txt
- + tests/print/FixityNamed/Rule/output
- + tests/print/FixityScope/Declarations/command.txt
- + tests/print/FixityScope/Declarations/output
- + tests/print/FixityScope/LambdaTuple/command.txt
- + tests/print/FixityScope/LambdaTuple/output
- + tests/print/FixityScope/UnknownSymbols/command.txt
- + tests/print/FixityScope/UnknownSymbols/output
- tests/prob_prog/categorical/command.txt
- tests/prob_prog/categorical/sample.hs
- tests/prob_prog/cluster/1/Model.hs
- tests/prob_prog/cluster/1/command.txt
- tests/prob_prog/cluster/2/Model.hs
- tests/prob_prog/cluster/2/command.txt
- tests/prob_prog/coal_mining/Coal.hs
- tests/prob_prog/coal_mining/command.txt
- tests/prob_prog/demos/1/Model.hs
- tests/prob_prog/demos/1/command.txt
- tests/prob_prog/demos/2/Main.hs
- tests/prob_prog/demos/2/Model.hs
- tests/prob_prog/demos/2/command.txt
- tests/prob_prog/demos/3/Model.hs
- tests/prob_prog/demos/3/command.txt
- tests/prob_prog/demos/4/Model.hs
- tests/prob_prog/demos/4/command.txt
- tests/prob_prog/demos/5/Model.hs
- tests/prob_prog/demos/5/command.txt
- tests/prob_prog/demos/6/Model.hs
- tests/prob_prog/demos/6/command.txt
- tests/prob_prog/demos/airline/Model.hs
- tests/prob_prog/demos/airline/command.txt
- tests/prob_prog/demos/variable-dim/Model.hs
- tests/prob_prog/demos/variable-dim/command.txt
- + tests/prob_prog/dirichlet-process/variable-dimension/Model.hs
- + tests/prob_prog/dirichlet-process/variable-dimension/command.txt
- + tests/prob_prog/dirichlet-process/variable-domain-map/Model.hs
- + tests/prob_prog/dirichlet-process/variable-domain-map/command.txt
- + tests/prob_prog/dirichlet-process/variable-domain-on/Model.hs
- + tests/prob_prog/dirichlet-process/variable-domain-on/command.txt
- tests/prob_prog/examples.1/GaussianMixture/GaussianMixture.hs
- tests/prob_prog/examples.1/GaussianMixture/command.txt
- tests/prob_prog/examples.1/GaussianRandomWalk/Model.hs
- tests/prob_prog/examples.1/GaussianRandomWalk/command.txt
- tests/prob_prog/examples.1/LDA/LDA.hs
- tests/prob_prog/examples.1/LDA/command.txt
- tests/prob_prog/examples.1/PCFG/PCFG.hs
- tests/prob_prog/examples.1/PCFG/command.txt
- tests/prob_prog/examples.2/branching/Model.hs
- tests/prob_prog/examples.2/branching/command.txt
- tests/prob_prog/examples.3/glm_hierarchical_model/Model.hs
- tests/prob_prog/examples.3/glm_hierarchical_model/command.txt
- tests/prob_prog/examples.3/mixture_model/Model.hs
- tests/prob_prog/examples.3/mixture_model/command.txt
- tests/prob_prog/functions/1/Test.hs
- tests/prob_prog/functions/1/command.txt
- + tests/prob_prog/gibbs-categorical/all-changing-edges/Model.hs
- + tests/prob_prog/gibbs-categorical/all-changing-edges/command.txt
- + tests/prob_prog/gibbs-categorical/fixed-large/Model.hs
- + tests/prob_prog/gibbs-categorical/fixed-large/command.txt
- + tests/prob_prog/gibbs-categorical/fixed-small/Model.hs
- + tests/prob_prog/gibbs-categorical/fixed-small/command.txt
- + tests/prob_prog/gibbs-categorical/one-changing-edge/Model.hs
- + tests/prob_prog/gibbs-categorical/one-changing-edge/command.txt
- + tests/prob_prog/gibbs-categorical/subset-changing-edges/Model.hs
- + tests/prob_prog/gibbs-categorical/subset-changing-edges/command.txt
- + tests/prob_prog/gibbs-categorical/zero-probability/Model.hs
- + tests/prob_prog/gibbs-categorical/zero-probability/command.txt
- + tests/prob_prog/heterogeneous-mixture/dimension-change/Model.hs
- + tests/prob_prog/heterogeneous-mixture/dimension-change/command.txt
- tests/prob_prog/hmm/1/HMM.hs
- tests/prob_prog/hmm/1/command.txt
- tests/prob_prog/if-then-else/1/Demo3.hs
- tests/prob_prog/if-then-else/1/command.txt
- tests/prob_prog/infer_tree/1/Model.hs
- tests/prob_prog/infer_tree/1/command.txt
- tests/prob_prog/infer_tree/2/Model.hs
- tests/prob_prog/infer_tree/2/command.txt
- tests/prob_prog/infer_tree/3/Model.hs
- tests/prob_prog/infer_tree/3/command.txt
- tests/prob_prog/infer_tree/4/Model.hs
- tests/prob_prog/infer_tree/4/command.txt
- tests/prob_prog/infer_tree/5/Model.hs
- tests/prob_prog/infer_tree/5/command.txt
- tests/prob_prog/infer_tree/6/Model.hs
- tests/prob_prog/infer_tree/6/command.txt
- tests/prob_prog/infer_tree/coalescent/1/Model.hs
- tests/prob_prog/infer_tree/coalescent/1/command.txt
- tests/prob_prog/infer_tree/coalescent/2/Model.hs
- tests/prob_prog/infer_tree/coalescent/2/command.txt
- tests/prob_prog/infer_tree/m7/Model.hs
- tests/prob_prog/infer_tree/m7/command.txt
- tests/prob_prog/infer_tree/yule/1/Model.hs
- tests/prob_prog/infer_tree/yule/1/command.txt
- tests/prob_prog/lazy_sample/2/command.txt
- tests/prob_prog/lazy_sample/2/sample.hs
- tests/prob_prog/lazy_sample/3/command.txt
- tests/prob_prog/lazy_sample/3/sample.hs
- tests/prob_prog/mcmc/propose/Model.hs
- tests/prob_prog/mcmc/propose/command.txt
- tests/prob_prog/no-resample/1/Model.hs
- tests/prob_prog/no-resample/1/command.txt
- tests/prob_prog/no-resample/2/Model.hs
- tests/prob_prog/no-resample/2/command.txt
- tests/prob_prog/observe/1/Model.hs
- tests/prob_prog/observe/1/command.txt
- tests/prob_prog/observe/2/Model.hs
- tests/prob_prog/observe/2/command.txt
- tests/prob_prog/observe/3/Model.hs
- tests/prob_prog/observe/3/command.txt
- tests/prob_prog/order-two/command.txt
- tests/prob_prog/order-two/order-two.hs
- tests/prob_prog/popgen/li_stephens/LiStephens2003_1.hs
- tests/prob_prog/popgen/li_stephens/command.txt
- tests/prob_prog/regression/LinearRegression.hs
- tests/prob_prog/regression/command.txt
- tests/prob_prog/sample_crp/command.txt
- tests/prob_prog/sample_crp/sample.hs
- tests/prob_prog/sample_tree/1/command.txt
- tests/prob_prog/sample_tree/1/sample.hs
- tests/prob_prog/sample_tree/2/command.txt
- tests/prob_prog/sample_tree/2/sample.hs
- tests/prob_prog/sample_tree/3/command.txt
- tests/prob_prog/sample_tree/3/sample.hs
- tests/prob_prog/sample_tree/4/Model.hs
- tests/prob_prog/sample_tree/4/command.txt
- tests/prob_prog/sample_tree/5/Model.hs
- tests/prob_prog/sample_tree/5/command.txt
- tests/prob_prog/sample_tree/yule/1/Main.hs
- tests/run-tests.py
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