[med-svn] [Git][med-team/python-pbcore][upstream] New upstream version 2.6.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / python-pbcore


Commits:
1003c3a1 by Andreas Tille at 2026-10-20T14:49:48+02:00
New upstream version 2.6.0+dfsg
- - - - -


47 changed files:

- .gitignore
- Makefile
- + bamboo-specs/bamboo.yml
- bamboo_build.sh
- − bin/updateXSDs.py
- + constraint.lock
- doc/pbcore.util.rst
- pbcore/chemistry/resources/mapping.xml
- pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi
- + pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi.v3
- pbcore/io/FastqIO.py
- pbcore/io/__init__.py
- pbcore/io/align/BamAlignment.py
- pbcore/io/align/BamIO.py
- pbcore/io/align/PacBioBamIndex.py
- pbcore/io/align/_BamSupport.py
- + pbcore/io/bedfile.py
- pbcore/io/dataset/DataSetIO.py
- pbcore/io/dataset/DataSetMembers.py
- pbcore/io/dataset/DataSetMetaTypes.py
- pbcore/io/dataset/DataSetReader.py
- pbcore/io/dataset/DataSetValidator.py
- pbcore/io/dataset/DataSetWriter.py
- − pbcore/io/dataset/pyxb/DataSetXsd.py
- − pbcore/io/dataset/pyxb/__init__.py
- − pbcore/io/dataset/pyxb/_pbbase.py
- − pbcore/io/dataset/pyxb/_pbmeta.py
- − pbcore/io/dataset/pyxb/_pbrk.py
- − pbcore/io/dataset/pyxb/_pbsample.py
- pbcore/io/dataset/utils.py
- pbcore/util/statistics.py
- setup.py
- + tests/data/report.txt
- + tests/data/report2.txt
- + tests/data/supplemental_resources.consensusreadset.xml
- + tests/data/supplemental_resources2.consensusreadset.xml
- + tests/test_mapped_sequence_identity.py
- tests/test_pbcore_io_AlnFileReaders.py
- + tests/test_pbcore_io_align_pacbiobamindex.py
- + tests/test_pbcore_io_bedfile.py
- tests/test_pbcore_util.py
- tests/test_pbdataset.py
- tests/test_pbdataset_filters.py
- tests/test_pbdataset_metadata.py
- tests/test_pbdataset_split.py
- tests/test_pbdataset_subtypes.py
- tests/test_pbdataset_utils.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/1003c3a1e6b135fdb4094a11856a46233ba0967f

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View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/1003c3a1e6b135fdb4094a11856a46233ba0967f
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