[med-svn] [Git][med-team/kallisto][upstream] New upstream version 0.52.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / kallisto


Commits:
8c3e0764 by Andreas Tille at 2026-10-20T16:45:37+02:00
New upstream version 0.52.0+dfsg
- - - - -


67 changed files:

- + .clang-format
- .gitignore
- + .make_binaries.linux.txt
- + .make_binaries.sh
- + .make_binaries.windows.txt
- CMakeLists.txt
- ext/bifrost/src/BitContainer.cpp
- ext/bifrost/src/BitContainer.hpp
- ext/bifrost/src/BooPHF.h
- ext/bifrost/src/ColorSet.cpp
- ext/bifrost/src/ColorSet.hpp
- ext/bifrost/src/ColoredCDBG.hpp
- ext/bifrost/src/ColoredCDBG.tcc
- ext/bifrost/src/Common.hpp
- ext/bifrost/src/CompactedDBG.hpp
- ext/bifrost/src/CompactedDBG.tcc
- ext/bifrost/src/CompressedCoverage.hpp
- ext/bifrost/src/CompressedSequence.cpp
- ext/bifrost/src/CompressedSequence.hpp
- ext/bifrost/src/DataAccessor.hpp
- ext/bifrost/src/DataAccessor.tcc
- ext/bifrost/src/DataStorage.hpp
- ext/bifrost/src/DataStorage.tcc
- ext/bifrost/src/FASTX_Parser.cpp
- ext/bifrost/src/FASTX_Parser.hpp
- ext/bifrost/src/File_Parser.hpp
- ext/bifrost/src/GFA_Parser.cpp
- ext/bifrost/src/GFA_Parser.hpp
- ext/bifrost/src/IO.tcc
- ext/bifrost/src/KmerCovIndex.hpp
- ext/bifrost/src/KmerCovIndex.tcc
- ext/bifrost/src/KmerHashTable.hpp
- ext/bifrost/src/KmerIterator.hpp
- ext/bifrost/src/KmerStream.hpp
- ext/bifrost/src/MinimizerIndex.cpp
- ext/bifrost/src/MinimizerIndex.hpp
- ext/bifrost/src/RepHash.hpp
- ext/bifrost/src/Search.tcc
- ext/bifrost/src/StreamCounter.hpp
- ext/bifrost/src/TinyBitmap.cpp
- ext/bifrost/src/TinyBitmap.hpp
- ext/bifrost/src/Unitig.hpp
- ext/bifrost/src/UnitigMap.hpp
- ext/bifrost/src/UnitigMap.tcc
- ext/bifrost/src/minHashIterator.hpp
- ext/bifrost/src/rw_spin_lock.h
- src/BUSTools.cpp
- src/BlockArray.hpp
- src/CMakeLists.txt
- src/Fusion.hpp → src/Fusion.cpp
- + src/Fusion.h
- src/GeneModel.cpp
- src/Inspect.h
- src/KmerIndex.cpp
- src/KmerIndex.h
- src/MinCollector.cpp
- src/Multinomial.hpp
- src/Node.hpp
- src/PlaintextWriter.cpp
- src/ProcessReads.cpp
- src/ProcessReads.h
- src/PseudoBam.cpp
- src/SparseVector.hpp
- src/common.h
- src/main.cpp
- src/weights.cpp
- unit_tests/test_weights.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/8c3e0764d27c68e270054be9d8131e72f93bfa03

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View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/8c3e0764d27c68e270054be9d8131e72f93bfa03
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