[med-svn] [Git][med-team/pbsuite][master] 5 commits: d/watch: version=5
Andreas Tille (@tille)
gitlab at salsa.debian.org
Fri Oct 23 12:42:36 BST 2026
Andreas Tille pushed to branch master at Debian Med / pbsuite
Commits:
2f3da9a0 by Andreas Tille at 2026-10-23T13:37:52+02:00
d/watch: version=5
- - - - -
f8a62f62 by Andreas Tille at 2026-10-23T13:38:06+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
8a386c4e by Andreas Tille at 2026-10-23T13:38:36+02:00
Changes made by cme
- - - - -
3b775b1b by Andreas Tille at 2026-10-23T13:38:38+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
812a908c by Andreas Tille at 2026-10-23T13:38:56+02:00
debputy lint --auto-fix (routine-update)
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+pbsuite (15.8.24+dfsg-9) UNRELEASED; urgency=medium
+
+ * d/watch: version=5
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Fri, 23 Oct 2026 13:36:56 +0200
+
pbsuite (15.8.24+dfsg-8) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,23 +1,24 @@
Source: pbsuite
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
+Uploaders:
+ Olivier Sallou <osallou at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- dh-sequence-python3,
- python3-all
-Standards-Version: 4.7.0
+Build-Depends:
+ debhelper-compat (= 14),
+ dh-sequence-python3,
+ python3-all,
Vcs-Browser: https://salsa.debian.org/med-team/pbsuite
Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git
Homepage: http://sourceforge.net/projects/pb-jelly
-Rules-Requires-Root: no
Package: pbsuite
Architecture: all
Section: metapackages
-Depends: ${misc:Depends},
- pbjelly,
- pbhoney
+Depends:
+ pbhoney,
+ pbjelly,
+ ${misc:Depends},
Description: software for Pacific Biosciences sequencing data
The PBSuite contains two projects created for analysis of
Pacific Biosciences long-read sequencing data.
@@ -27,9 +28,10 @@ Description: software for Pacific Biosciences sequencing data
Package: python3-pbsuite-utils
Architecture: all
Section: python
-Depends: ${misc:Depends},
- ${python3:Depends},
- python3-pysam
+Depends:
+ python3-pysam,
+ ${misc:Depends},
+ ${python3:Depends},
Description: software for Pacific Biosciences sequencing data -- Python utilities
The PBSuite currently contains two projects created and maintained
by Adam English for analysis of Pacific Biosciences long-read
@@ -41,11 +43,12 @@ Description: software for Pacific Biosciences sequencing data -- Python utilitie
Package: pbjelly
Architecture: all
-Depends: ${misc:Depends},
- ${python3:Depends},
- python3-pbsuite-utils (= ${source:Version}),
- python3-networkx,
- blasr
+Depends:
+ blasr,
+ python3-networkx,
+ python3-pbsuite-utils (= ${source:Version}),
+ ${misc:Depends},
+ ${python3:Depends},
Description: genome assembly upgrading tool
PBJelly is a highly automated pipeline that aligns long sequencing
reads (such as PacBio RS reads or long 454 reads in fasta format)
@@ -56,18 +59,20 @@ Description: genome assembly upgrading tool
Package: pbhoney
Architecture: all
-Depends: ${misc:Depends},
- ${python3:Depends},
- python3-pbsuite-utils (= ${source:Version}),
- python3-pbbanana (= ${source:Version}),
- python3-pysam,
- python3-networkx,
- python3-h5py,
- python3-numpy,
- python3-intervaltree-bio,
- blasr,
- samtools
-Recommends: pbdagcon
+Depends:
+ blasr,
+ python3-h5py,
+ python3-intervaltree-bio,
+ python3-networkx,
+ python3-numpy,
+ python3-pbbanana (= ${source:Version}),
+ python3-pbsuite-utils (= ${source:Version}),
+ python3-pysam,
+ samtools,
+ ${misc:Depends},
+ ${python3:Depends},
+Recommends:
+ pbdagcon,
Description: genomic structural variation discovery
PBHoney is an implementation of two variant-identification
approaches designed to exploit the high mappability of long reads
@@ -80,12 +85,13 @@ Description: genomic structural variation discovery
Package: python3-pbbanana
Architecture: all
Section: python
-Depends: ${misc:Depends},
- ${python3:Depends},
- python3-pbsuite-utils (= ${source:Version}),
- python3-networkx,
- pbjelly (= ${source:Version}),
- blasr
+Depends:
+ blasr,
+ pbjelly (= ${source:Version}),
+ python3-networkx,
+ python3-pbsuite-utils (= ${source:Version}),
+ ${misc:Depends},
+ ${python3:Depends},
Description: additional utilities for the pbsuite
PBBanana contains some assembly and consensus utilities
for the PBSuite.
=====================================
debian/watch
=====================================
@@ -1,6 +1,6 @@
-version=4
+Version: 5
-opts="repack,repacksuffix=+dfsg,dversionmangle=s/\+dfsg\d?//" \
- http://sf.net/pb-jelly/ \
- PBSuite_(.*)\.tgz \
- debian uupdate
+Source: http://sf.net/pb-jelly/
+Matching-Pattern: PBSuite_(.*)\.tgz
+Dversion-Mangle: s/\+dfsg\d?//
+Repack-Suffix: +dfsg
View it on GitLab: https://salsa.debian.org/med-team/pbsuite/-/compare/1ad5abe4c2a8b09612bb4d79a2b2dd334fe3d95a...812a908cce1641d3a4a8b9dad5d53053a416a6d4
--
View it on GitLab: https://salsa.debian.org/med-team/pbsuite/-/compare/1ad5abe4c2a8b09612bb4d79a2b2dd334fe3d95a...812a908cce1641d3a4a8b9dad5d53053a416a6d4
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