[med-svn] [Git][med-team/vcftools][master] 2 commits: d/watch: version=5

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / vcftools


Commits:
bae00f56 by Andreas Tille at 2026-10-26T14:35:04+01:00
d/watch: version=5

- - - - -
3e2177b1 by Andreas Tille at 2026-10-26T14:37:56+01:00
Fix possible attempt to escape whitespace in qw() list with Perl 5.44 Closes: #1151888

- - - - -


4 changed files:

- debian/changelog
- + debian/patches/perl_5.44.patch
- debian/patches/series
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,6 +1,12 @@
 vcftools (0.1.17-2) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Replace pkg-config with pkgconf in Build-Depends
+  * d/watch: version=5
+
+  [ Roland Rosenfeld ]
+  * Fix possible attempt to escape whitespace in qw() list with Perl 5.44
+    Closes: #1151888
 
  -- Andreas Tille <tille at debian.org>  Tue, 10 Mar 2026 09:46:28 +0100
 


=====================================
debian/patches/perl_5.44.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Roland Rosenfeld <roland at debian.org>
+Bug-Debian: https://bugs.debian.org/1151888
+Description: Fix possible attempt to escape whitespace in qw() list with Perl 5.44
+Date: 2026-10-24
+
+--- a/src/perl/Vcf.pm
++++ b/src/perl/Vcf.pm
+@@ -2841,7 +2841,7 @@ sub new
+         regex_gtsep => qr{[\\|/]},
+         regex_gt    => qr{^(\.|\d+)([\\|/]?)(\.?|\d*)$},
+         regex_gt2   => qr{^(\.|[0-9ACGTNIDacgtn]+)([\\|/]?)}, # . 0/1 0|1 A/A A|A D4/IACGT
+-        gt_sep => [qw(\ | /)],
++        gt_sep => [qw(\\ | /)],
+     };
+ 
+     for my $key (keys %{$$self{_defaults}}) 


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ temporary_test_fix.patch
 spelling.patch
 manpage.patch
 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch
+perl_5.44.patch


=====================================
debian/watch
=====================================
@@ -1,3 +1,4 @@
-version=4
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g" \
-https://github.com/vcftools/vcftools/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Version: 5
+
+Template: Github
+Dist: https://github.com/vcftools/vcftools



View it on GitLab: https://salsa.debian.org/med-team/vcftools/-/compare/327ecc20cc653cba73d1818780bafa3c42838829...3e2177b106299f5a17c7b9c3ab0b0a30f04ad9fe

-- 
View it on GitLab: https://salsa.debian.org/med-team/vcftools/-/compare/327ecc20cc653cba73d1818780bafa3c42838829...3e2177b106299f5a17c7b9c3ab0b0a30f04ad9fe
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